Wall clock time and date at job start Fri Apr 10 2020 14:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47219 * 2 1 4 4 C 1.50698 * 109.46999 * 240.00334 * 2 1 3 5 5 H 1.08002 * 120.00086 * 240.00376 * 4 2 1 6 6 C 1.37883 * 120.00169 * 60.00029 * 4 2 1 7 7 N 1.31509 * 119.99887 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47493 * 89.99836 * 8 6 4 10 10 H 1.48502 * 109.46808 * 209.99658 * 8 6 4 11 11 H 1.48505 * 109.47335 * 329.99562 * 8 6 4 12 12 N 1.46501 * 109.47312 * 120.00372 * 2 1 3 13 13 C 1.46494 * 119.99830 * 59.99813 * 12 2 1 14 14 C 1.34770 * 119.99758 * 240.00325 * 12 2 1 15 15 O 1.21586 * 120.00314 * 4.82222 * 14 12 2 16 16 C 1.47632 * 119.99717 * 184.83160 * 14 12 2 17 17 C 1.39528 * 120.51149 * 141.72190 * 16 14 12 18 18 N 1.31709 * 120.95047 * 179.97438 * 17 16 14 19 19 C 1.32312 * 121.83532 * 359.97438 * 18 17 16 20 20 C 1.39849 * 120.54897 * 0.02562 * 19 18 17 21 21 C 1.38190 * 119.60147 * 359.97438 * 20 19 18 22 22 N 1.40133 * 119.51739 * 179.97438 * 20 19 18 23 23 C 1.35142 * 118.87182 * 15.54627 * 22 20 19 24 24 O 1.21290 * 120.19829 * 181.69509 * 23 22 20 25 25 C 1.50765 * 119.60733 * 1.66947 * 23 22 20 26 26 O 1.35755 * 120.37123 * 180.02562 * 19 18 17 27 27 H 1.09001 * 109.47219 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47348 * 299.99552 * 1 2 3 29 29 H 1.09004 * 109.47209 * 59.99694 * 1 2 3 30 30 H 0.97002 * 120.00178 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.47154 * 264.88159 * 13 12 2 32 32 H 1.08997 * 109.47560 * 24.88658 * 13 12 2 33 33 H 1.09002 * 109.47079 * 144.88442 * 13 12 2 34 34 H 1.07998 * 119.52437 * 359.94561 * 17 16 14 35 35 H 1.08005 * 120.95646 * 179.97438 * 21 20 19 36 36 H 0.97003 * 120.56314 * 195.57297 * 22 20 19 37 37 H 1.09001 * 109.42780 * 88.59559 * 25 23 22 38 38 H 1.09002 * 109.42919 * 208.48847 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4278 14 6 2.7931 -0.0357 2.0833 15 8 3.0147 1.1509 1.9373 16 6 3.3730 -0.7590 3.2322 17 6 4.6662 -0.4721 3.6705 18 7 5.1918 -1.1117 4.6948 19 6 4.5243 -2.0473 5.3505 20 6 3.2230 -2.3905 4.9704 21 6 2.6315 -1.7452 3.9011 22 7 2.5361 -3.3849 5.6797 23 6 3.0035 -3.7642 6.8897 24 8 2.4457 -4.6441 7.5107 25 6 4.2228 -3.0875 7.4628 26 8 5.0949 -2.6876 6.4028 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.7087 1.1614 -3.4844 31 1 0.7890 -2.1449 2.0752 32 1 1.4409 -2.5737 0.4754 33 1 2.5001 -2.6047 1.9055 34 1 5.2446 0.2851 3.1622 35 1 1.6279 -1.9932 3.5886 36 1 1.7390 -3.7943 5.3084 37 1 3.9165 -2.2098 8.0319 38 1 4.7470 -3.7811 8.1203 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271268151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:22 Heat of formation + Delta-G solvation = -68.485587 kcal Electronic energy + Delta-G solvation = -24821.856442 eV Core-core repulsion = 21050.819667 eV Total energy + Delta-G solvation = -3771.036775 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.89489 -41.24267 -40.11158 -38.92347 -37.27935 -36.75425 -35.02828 -33.40184 -31.42562 -31.01564 -29.15155 -27.87966 -27.28719 -25.96903 -24.91184 -23.50072 -21.79974 -20.58831 -20.05355 -18.97493 -18.72524 -18.32204 -18.05365 -17.45369 -17.22983 -16.85635 -16.36578 -16.18956 -16.06439 -15.74482 -15.26585 -14.86214 -14.75839 -14.45100 -14.12728 -14.07689 -13.77648 -13.54818 -13.01299 -12.89875 -12.71906 -12.69010 -12.57080 -12.48521 -12.19099 -12.12700 -11.49887 -11.31780 -11.17083 -10.68592 -10.57494 -10.44666 -9.48148 -9.28106 -8.14128 -6.30260 -0.60235 -0.21813 0.96602 1.42875 1.44534 1.45809 1.54332 1.69552 1.75279 2.18208 2.45198 2.50779 2.67121 3.14756 3.16193 3.42708 3.60414 3.64205 3.92605 4.04106 4.19636 4.27612 4.34569 4.56618 4.73345 4.77982 4.91564 4.99136 5.00226 5.07678 5.15904 5.48401 5.52123 5.56451 5.66922 5.80719 6.02665 6.16301 6.50946 6.63471 6.72142 6.76985 7.21821 7.42987 8.90226 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.003421 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.363598 B = 8182.608576 C = 8446.939582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.015 0.985 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.587 5.587 13 C 0.069 3.931 14 C 0.549 3.451 15 O -0.588 6.588 16 C -0.169 4.169 17 C 0.168 3.832 18 N -0.481 5.481 19 C 0.304 3.696 20 C 0.055 3.945 21 C -0.041 4.041 22 N -0.646 5.646 23 C 0.494 3.506 24 O -0.535 6.535 25 C 0.053 3.947 26 O -0.295 6.295 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.265 0.735 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.428 0.572 37 H 0.131 0.869 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 -10.196 17.572 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.033 0.967 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.316 5.316 13 C -0.072 4.072 14 C 0.337 3.663 15 O -0.470 6.470 16 C -0.175 4.175 17 C 0.011 3.989 18 N -0.199 5.199 19 C 0.121 3.879 20 C -0.044 4.044 21 C -0.069 4.069 22 N -0.295 5.295 23 C 0.282 3.718 24 O -0.411 6.411 25 C -0.025 4.025 26 O -0.205 6.205 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.195 0.805 35 H 0.199 0.801 36 H 0.270 0.730 37 H 0.148 0.852 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.674 -9.841 18.142 20.964 hybrid contribution -1.166 -0.280 -1.672 2.057 sum 2.508 -10.122 16.470 19.494 Atomic orbital electron populations 1.21885 0.96817 1.00329 1.00146 1.18618 0.91856 0.92389 0.81080 0.96743 1.21567 1.32015 1.13175 0.90998 0.91914 1.25674 0.95048 0.95561 1.01882 1.70011 1.37193 1.23774 1.24460 0.85499 0.78857 0.78254 0.78662 1.19392 1.21348 1.19565 1.48141 1.48072 1.13287 1.22094 1.22244 1.00833 0.80722 1.03445 1.18365 0.79002 0.86331 0.82616 1.90754 1.62536 1.16957 1.76750 1.20651 0.97416 1.00340 0.99079 1.22695 0.91467 0.95099 0.89668 1.66989 1.37166 1.06473 1.09264 1.19523 0.86805 0.91186 0.90360 1.18476 0.92716 0.95756 0.97423 1.21747 1.01507 0.91519 0.92115 1.43651 1.30353 1.37276 1.18184 1.21883 0.86498 0.82726 0.80652 1.90839 1.60472 1.30530 1.59242 1.23721 0.88015 1.03008 0.87710 1.86165 1.35928 1.70216 1.28144 0.93206 0.95846 0.91417 0.92625 0.90114 0.90551 0.89991 0.80543 0.80085 0.73000 0.85155 0.79957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.97 71.98 0.65 -5.37 16 2 C 0.26 12.83 2.63 44.24 0.12 12.95 16 3 H 0.01 0.86 6.91 -2.39 -0.02 0.84 16 4 C -0.54 -27.80 7.96 25.60 0.20 -27.60 16 5 H 0.06 3.13 7.42 -2.91 -0.02 3.11 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -50.99 11.32 21.45 0.24 -50.74 16 8 Si 0.96 41.57 29.54 68.60 2.03 43.59 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 N -0.59 -22.68 2.75 -830.47 -2.29 -24.97 16 13 C 0.07 1.88 7.82 127.77 1.00 2.88 16 14 C 0.55 21.12 7.37 86.72 0.64 21.76 16 15 O -0.59 -28.08 16.24 -3.99 -0.06 -28.14 16 16 C -0.17 -4.73 5.27 -19.97 -0.11 -4.84 16 17 C 0.17 4.59 10.78 85.02 0.92 5.51 16 18 N -0.48 -12.46 10.37 -307.02 -3.18 -15.64 16 19 C 0.30 6.64 7.54 85.01 0.64 7.28 16 20 C 0.06 1.02 6.54 38.19 0.25 1.27 16 21 C -0.04 -0.83 7.59 22.77 0.17 -0.66 16 22 N -0.65 -9.47 5.48 -302.57 -1.66 -11.13 16 23 C 0.49 7.84 7.95 87.62 0.70 8.54 16 24 O -0.53 -11.65 17.95 -3.06 -0.05 -11.70 16 25 C 0.05 0.58 7.15 71.26 0.51 1.09 16 26 O -0.30 -5.42 10.50 -90.80 -0.95 -6.37 16 27 H 0.05 2.00 7.67 -2.39 -0.02 1.98 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 3.46 6.07 -2.38 -0.01 3.44 16 30 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.08 1.62 6.86 -2.39 -0.02 1.61 16 32 H 0.08 2.29 7.10 -2.39 -0.02 2.27 16 33 H 0.08 1.81 5.83 -2.39 -0.01 1.80 16 34 H 0.18 4.79 8.04 -2.91 -0.02 4.77 16 35 H 0.18 2.79 5.30 -2.91 -0.02 2.78 16 36 H 0.43 4.68 8.89 -92.71 -0.82 3.86 16 37 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.18 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -71.88 321.17 0.51 -71.36 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.31 Total: 9.52 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 6.13 Total: 24.23 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -6.88 Total: -102.48 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -1.07 Total: -46.22 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -71.88 0.51 -71.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271268151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.876 kcal (2) G-P(sol) polarization free energy of solvation -71.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds