Wall clock time and date at job start Fri Apr 10 2020 14:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47156 * 2 1 4 4 C 1.50704 * 109.46838 * 240.00374 * 2 1 3 5 5 H 1.08002 * 119.99576 * 245.48068 * 4 2 1 6 6 C 1.37873 * 119.99971 * 65.48600 * 4 2 1 7 7 N 1.31511 * 120.00372 * 9.56502 * 6 4 2 8 8 Si 1.86808 * 119.99695 * 189.57367 * 6 4 2 9 9 H 1.48499 * 109.47267 * 84.98903 * 8 6 4 10 10 H 1.48501 * 109.46805 * 204.99192 * 8 6 4 11 11 H 1.48496 * 109.46811 * 324.98879 * 8 6 4 12 12 N 1.46499 * 109.47347 * 120.00347 * 2 1 3 13 13 C 1.46496 * 119.99866 * 59.99921 * 12 2 1 14 14 S 1.65604 * 119.99938 * 239.99782 * 12 2 1 15 15 O 1.42098 * 106.40094 * 23.53871 * 14 12 2 16 16 O 1.42099 * 106.40273 * 156.45852 * 14 12 2 17 17 N 1.65600 * 107.21943 * 270.00066 * 14 12 2 18 18 C 1.47421 * 125.64909 * 90.02080 * 17 14 12 19 19 C 1.54913 * 104.83146 * 204.09346 * 18 17 14 20 20 C 1.55160 * 101.58348 * 322.99119 * 19 18 17 21 21 C 1.47024 * 125.64452 * 269.71736 * 17 14 12 22 22 H 1.08997 * 109.88256 * 59.56209 * 21 17 14 23 23 C 1.50697 * 109.88428 * 298.39183 * 21 17 14 24 24 N 1.34777 * 119.99991 * 180.02562 * 23 21 17 25 25 O 1.21281 * 119.99990 * 0.02562 * 23 21 17 26 26 H 1.08999 * 109.47134 * 182.63125 * 1 2 3 27 27 H 1.09003 * 109.46616 * 302.63258 * 1 2 3 28 28 H 1.08993 * 109.47494 * 62.62606 * 1 2 3 29 29 H 0.97000 * 120.00213 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47595 * 90.00380 * 13 12 2 31 31 H 1.08998 * 109.47313 * 329.99593 * 13 12 2 32 32 H 1.09009 * 109.46854 * 209.99791 * 13 12 2 33 33 H 1.08996 * 110.36675 * 322.93413 * 18 17 14 34 34 H 1.09000 * 110.36285 * 85.25657 * 18 17 14 35 35 H 1.08995 * 111.00499 * 81.06961 * 19 18 17 36 36 H 1.09004 * 110.99928 * 204.87989 * 19 18 17 37 37 H 1.08997 * 110.71754 * 153.86290 * 20 19 18 38 38 H 1.08998 * 110.71938 * 276.96321 * 20 19 18 39 39 H 0.97000 * 120.00150 * 0.02562 * 24 23 21 40 40 H 0.96995 * 119.99818 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5782 -1.6372 -1.1339 6 6 1.7949 -0.1770 -2.4796 7 7 1.3002 1.0362 -2.5934 8 14 2.1758 -1.1778 -4.0103 9 1 1.0234 -2.0600 -4.3244 10 1 2.4231 -0.2610 -5.1521 11 1 3.3838 -2.0076 -3.7711 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4278 14 16 2.9705 0.1141 2.2862 15 8 2.6905 1.4972 2.1192 16 8 2.8229 -0.5647 3.5258 17 7 4.5438 -0.1043 1.8179 18 6 5.2968 0.7709 0.9011 19 6 6.4089 -0.1334 0.3135 20 6 6.7787 -1.0091 1.5398 21 6 5.4230 -1.1996 2.2525 22 1 4.9887 -2.1583 1.9688 23 6 5.6136 -1.1419 3.7462 24 7 6.3881 -2.0566 4.3626 25 8 5.0702 -0.2722 4.3938 26 1 -0.3633 -1.0266 0.0472 27 1 -0.3633 0.5542 0.8655 28 1 -0.3634 0.4725 -0.9125 29 1 1.1329 1.4113 -3.4722 30 1 2.4157 -2.7377 0.9715 31 1 0.6904 -2.3002 0.9846 32 1 1.6239 -2.2853 2.5001 33 1 4.6465 1.1373 0.1068 34 1 5.7358 1.6052 1.4482 35 1 6.0243 -0.7456 -0.5021 36 1 7.2621 0.4602 -0.0150 37 1 7.1869 -1.9678 1.2200 38 1 7.4838 -0.4879 2.1873 39 1 6.8231 -2.7519 3.8447 40 1 6.5105 -2.0197 5.3241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407972112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:52 Heat of formation + Delta-G solvation = -134.368501 kcal Electronic energy + Delta-G solvation = -25440.419530 eV Core-core repulsion = 21801.969809 eV Total energy + Delta-G solvation = -3638.449722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99989 -38.52240 -38.17352 -37.88416 -36.81626 -34.68994 -34.46151 -31.78292 -31.01338 -30.34296 -27.29141 -26.97017 -24.51138 -22.70457 -22.31818 -21.66782 -19.93547 -19.07399 -18.57699 -18.35728 -17.88034 -17.73157 -17.04896 -16.44313 -16.03847 -15.67688 -15.32318 -15.10026 -14.77129 -14.61866 -14.54250 -14.18009 -13.74337 -13.54725 -13.45558 -13.23663 -13.13409 -12.86403 -12.76631 -12.69568 -12.62719 -12.59790 -12.28046 -12.18704 -12.07104 -11.85029 -11.70946 -11.22211 -11.04151 -10.57102 -10.46045 -10.01127 -9.66489 -8.08646 -6.20695 -0.35046 1.48411 1.50719 1.59075 1.68233 2.01534 2.44730 2.49858 2.79213 3.21495 3.23415 3.52870 3.83247 4.02326 4.12250 4.19946 4.29204 4.57743 4.68067 4.75496 4.78134 4.87215 4.89625 4.91266 4.96490 5.02799 5.10792 5.13975 5.16997 5.35402 5.42781 5.57684 5.70557 5.85482 5.97578 6.06275 6.28607 6.53427 6.88237 7.43357 7.48011 8.98886 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.006315 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.513910 B = 4432.888492 C = 5130.112024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.021 0.979 4 C -0.526 4.526 5 H 0.073 0.927 6 C 0.018 3.982 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.278 1.278 10 H -0.292 1.292 11 H -0.258 1.258 12 N -0.997 5.997 13 C 0.094 3.906 14 S 2.805 3.195 15 O -1.024 7.024 16 O -0.989 6.989 17 N -1.001 6.001 18 C 0.111 3.889 19 C -0.116 4.116 20 C -0.102 4.102 21 C 0.122 3.878 22 H 0.120 0.880 23 C 0.495 3.505 24 N -0.829 5.829 25 O -0.577 6.577 26 H 0.056 0.944 27 H 0.018 0.982 28 H 0.054 0.946 29 H 0.263 0.737 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.421 0.579 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.301 -11.210 5.679 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.165 3.835 3 H 0.039 0.961 4 C -0.565 4.565 5 H 0.091 0.909 6 C -0.182 4.182 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.218 1.218 11 H -0.182 1.182 12 N -0.839 5.839 13 C -0.052 4.052 14 S 2.817 3.183 15 O -1.009 7.009 16 O -0.973 6.973 17 N -0.840 5.840 18 C -0.014 4.014 19 C -0.155 4.155 20 C -0.141 4.141 21 C 0.012 3.988 22 H 0.138 0.862 23 C 0.278 3.722 24 N -0.394 5.394 25 O -0.455 6.455 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.106 0.894 39 H 0.253 0.747 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 13.425 -9.954 6.602 17.969 hybrid contribution -0.204 -0.208 -0.880 0.927 sum 13.220 -10.162 5.722 17.629 Atomic orbital electron populations 1.21908 0.98119 1.00151 0.99308 1.18436 0.91668 0.91569 0.81793 0.96116 1.21533 1.36010 1.08605 0.90335 0.90895 1.25733 0.95164 0.95319 1.01994 1.70116 1.45779 1.15523 1.24684 0.85560 0.78984 0.78447 0.78556 1.20334 1.21815 1.18242 1.57764 1.64730 1.22645 1.38771 1.21469 1.02545 0.80325 1.00832 1.00912 0.72380 0.72462 0.72572 1.93491 1.84713 1.35272 1.87415 1.93524 1.86039 1.75991 1.41755 1.58756 1.27642 1.37219 1.60374 1.22146 0.94587 0.93431 0.91285 1.22770 0.97310 0.97717 0.97700 1.22705 0.91922 1.03635 0.95856 1.21639 0.94975 0.92074 0.90151 0.86218 1.21393 0.77986 0.81512 0.91341 1.43483 1.51150 1.32169 1.12642 1.90769 1.48610 1.38170 1.67944 0.92541 0.96281 0.92705 0.92786 0.91794 0.90377 0.91103 0.92522 0.92045 0.89920 0.87262 0.84881 0.89368 0.74703 0.76132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.57 9.09 71.98 0.65 -5.92 16 2 C 0.27 13.66 2.49 44.25 0.11 13.77 16 3 H 0.02 1.24 6.85 -2.39 -0.02 1.22 16 4 C -0.53 -26.45 8.33 25.60 0.21 -26.23 16 5 H 0.07 3.44 7.53 -2.91 -0.02 3.42 16 6 C 0.02 0.92 5.18 84.65 0.44 1.35 16 7 N -0.92 -51.83 12.16 21.45 0.26 -51.57 16 8 Si 0.96 40.23 29.55 68.60 2.03 42.25 16 9 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 12 N -1.00 -43.29 3.12 -520.46 -1.62 -44.91 16 13 C 0.09 3.25 9.85 127.77 1.26 4.51 16 14 S 2.81 126.46 5.98 -56.49 -0.34 126.12 16 15 O -1.02 -55.27 16.29 -128.00 -2.08 -57.35 16 16 O -0.99 -46.00 13.62 -119.03 -1.62 -47.62 16 17 N -1.00 -35.64 3.18 -488.10 -1.55 -37.20 16 18 C 0.11 3.58 6.98 86.86 0.61 4.19 16 19 C -0.12 -2.37 7.09 31.99 0.23 -2.15 16 20 C -0.10 -1.55 6.41 31.79 0.20 -1.34 16 21 C 0.12 3.02 3.47 44.60 0.15 3.18 16 22 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 23 C 0.49 13.69 6.77 87.66 0.59 14.28 16 24 N -0.83 -12.56 8.81 -173.53 -1.53 -14.09 16 25 O -0.58 -23.35 14.73 18.86 0.28 -23.08 16 26 H 0.06 2.44 6.56 -2.39 -0.02 2.43 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 2.87 6.85 -2.39 -0.02 2.86 16 29 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.06 1.91 8.09 -2.39 -0.02 1.89 16 31 H 0.08 2.64 6.38 -2.39 -0.02 2.63 16 32 H 0.07 2.30 7.02 -2.38 -0.02 2.29 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 1.19 7.84 -2.39 -0.02 1.17 16 39 H 0.42 2.60 8.81 -92.71 -0.82 1.78 16 40 H 0.41 5.62 8.93 -92.71 -0.83 4.80 16 Total: -1.00 -81.90 334.60 -2.30 -84.20 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.57 Total: 17.61 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 4.46 Total: 5.64 kcal Atomic # 7 Polarization: -143.32 SS G_CDS: -4.45 Total: -147.77 kcal Atomic # 8 Polarization: -124.62 SS G_CDS: -3.43 Total: -128.05 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 16 Polarization: 126.46 SS G_CDS: -0.34 Total: 126.12 kcal Total: -81.90 -2.30 -84.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407972112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.167 kcal (2) G-P(sol) polarization free energy of solvation -81.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds