Wall clock time and date at job start Fri Apr 10 2020 14:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47508 * 2 1 4 4 C 1.50697 * 109.47138 * 120.00529 * 2 1 3 5 5 H 1.08003 * 120.00781 * 119.99590 * 4 2 1 6 6 C 1.37876 * 119.99604 * 299.99793 * 4 2 1 7 7 N 1.31516 * 120.00065 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99932 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46859 * 269.99582 * 8 6 4 10 10 H 1.48498 * 109.46705 * 29.99885 * 8 6 4 11 11 H 1.48498 * 109.46956 * 149.99676 * 8 6 4 12 12 N 1.46507 * 109.46996 * 240.00178 * 2 1 3 13 13 C 1.46501 * 119.99719 * 300.00214 * 12 2 1 14 14 S 1.65594 * 120.00113 * 120.00273 * 12 2 1 15 15 O 1.42102 * 106.40427 * 203.54041 * 14 12 2 16 16 O 1.42105 * 106.40251 * 336.46004 * 14 12 2 17 17 N 1.65597 * 107.21703 * 90.00001 * 14 12 2 18 18 C 1.47269 * 121.35351 * 96.98839 * 17 14 12 19 19 C 1.52991 * 108.18973 * 118.47103 * 18 17 14 20 20 N 1.45649 * 110.77194 * 46.72341 * 19 18 17 21 21 C 1.33377 * 124.59163 * 338.12631 * 20 19 18 22 22 O 1.21280 * 118.49373 * 184.29660 * 21 20 19 23 23 C 1.47049 * 121.35471 * 276.69762 * 17 14 12 24 24 H 1.09005 * 109.56477 * 102.94132 * 23 17 14 25 25 C 1.52997 * 109.56794 * 342.58946 * 23 17 14 26 26 H 1.09001 * 109.46967 * 300.00437 * 1 2 3 27 27 H 1.09006 * 109.46810 * 59.99866 * 1 2 3 28 28 H 1.08999 * 109.47329 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99561 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47256 * 90.00289 * 13 12 2 31 31 H 1.09000 * 109.47072 * 209.99885 * 13 12 2 32 32 H 1.09001 * 109.47375 * 329.99995 * 13 12 2 33 33 H 1.08997 * 109.71790 * 238.14114 * 18 17 14 34 34 H 1.08998 * 109.72036 * 358.75143 * 18 17 14 35 35 H 1.09000 * 109.21718 * 167.05628 * 19 18 17 36 36 H 1.09003 * 109.22011 * 286.43684 * 19 18 17 37 37 H 0.97001 * 117.70102 * 158.09678 * 20 19 18 38 38 H 1.09007 * 109.47314 * 62.85357 * 25 23 17 39 39 H 1.08999 * 109.47296 * 182.85258 * 25 23 17 40 40 H 1.09005 * 109.47058 * 302.85910 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4826 7 7 0.9436 0.8301 2.6033 8 14 2.3225 -1.1198 4.0079 9 1 1.3447 -2.1617 4.4123 10 1 3.6308 -1.7568 3.7118 11 1 2.4873 -0.1404 5.1119 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0932 -1.4281 14 16 2.9704 0.1141 -2.2863 15 8 2.8227 -0.5645 -3.5260 16 8 2.6904 1.4973 -2.1192 17 7 4.5437 -0.1044 -1.8180 18 6 5.3848 -1.1511 -2.4227 19 6 6.5691 -0.4723 -3.1136 20 7 7.1702 0.5289 -2.2433 21 6 6.5469 1.1155 -1.2203 22 8 7.1264 1.9929 -0.6160 23 6 5.1596 0.7429 -0.7860 24 1 5.2101 0.1942 0.1545 25 6 4.3240 2.0107 -0.5981 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7096 1.1617 3.4844 30 1 0.7374 -2.1443 -1.9995 31 1 2.4627 -2.5819 -1.9865 32 1 1.5294 -2.5969 -0.4709 33 1 5.7485 -1.8246 -1.6467 34 1 4.8039 -1.7127 -3.1544 35 1 7.3168 -1.2243 -3.3654 36 1 6.2229 0.0096 -4.0281 37 1 8.0885 0.7869 -2.4197 38 1 3.3303 1.7412 -0.2399 39 1 4.8087 2.6608 0.1303 40 1 4.2374 2.5333 -1.5507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:06 Heat of formation + Delta-G solvation = -83.882591 kcal Electronic energy + Delta-G solvation = -25678.457380 eV Core-core repulsion = 22042.196892 eV Total energy + Delta-G solvation = -3636.260488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.22957 -37.12125 -36.74992 -36.22511 -35.40500 -34.42299 -32.65892 -31.00236 -29.15598 -27.86856 -25.63272 -25.23453 -24.62067 -23.05465 -20.83617 -19.75678 -18.40192 -17.54429 -17.32377 -16.84309 -16.51452 -16.11810 -15.40139 -15.35384 -15.05989 -14.47384 -14.01584 -13.62600 -13.35964 -13.26605 -13.04615 -12.79060 -12.49741 -12.26923 -12.05243 -12.01254 -11.68208 -11.53502 -11.46467 -11.34953 -11.05460 -11.02115 -10.86391 -10.42831 -10.27952 -10.23258 -10.06570 -9.89220 -9.29414 -9.18275 -8.84541 -8.52246 -8.03576 -6.14745 -4.23820 1.04352 2.68496 3.08316 3.21807 3.30398 3.30754 3.38735 3.95789 4.31162 4.52148 4.59016 4.72978 4.96639 5.13934 5.16107 5.21074 5.38294 5.52467 5.60529 5.68300 5.85770 6.09463 6.19923 6.26199 6.40918 6.48293 6.60460 6.76053 6.79298 6.85208 6.95124 7.12996 7.26608 7.41793 7.57429 7.72770 7.98734 8.19178 8.23022 8.79195 9.43298 10.90019 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.007088 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.606898 B = 3949.492053 C = 4813.667841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.263 3.737 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.988 5.988 13 C 0.107 3.893 14 S 2.778 3.222 15 O -0.995 6.995 16 O -0.969 6.969 17 N -1.009 6.009 18 C 0.104 3.896 19 C 0.099 3.901 20 N -0.720 5.720 21 C 0.521 3.479 22 O -0.546 6.546 23 C 0.149 3.851 24 H 0.113 0.887 25 C -0.169 4.169 26 H 0.093 0.907 27 H 0.012 0.988 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.396 0.604 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.010 -5.556 -9.342 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.831 5.831 13 C -0.039 4.039 14 S 2.790 3.210 15 O -0.979 6.979 16 O -0.953 6.953 17 N -0.848 5.848 18 C -0.022 4.022 19 C -0.028 4.028 20 N -0.373 5.373 21 C 0.306 3.694 22 O -0.423 6.423 23 C 0.040 3.960 24 H 0.130 0.870 25 C -0.227 4.227 26 H 0.112 0.888 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.664 -4.544 -9.601 13.099 hybrid contribution 0.833 -0.863 1.122 1.642 sum 8.497 -5.406 -8.479 13.166 Atomic orbital electron populations 1.22062 0.97876 0.99723 1.00815 1.18899 0.91997 0.92855 0.80218 0.91764 1.21341 1.32170 1.13261 0.90071 0.91920 1.24905 0.94856 0.94909 0.98952 1.69867 1.35967 1.22381 1.23956 0.86558 0.79163 0.79385 0.82641 1.20701 1.19935 1.21110 1.57780 1.63804 1.21522 1.39971 1.21185 0.98901 0.81944 1.01909 1.02108 0.72057 0.73882 0.72970 1.93514 1.85691 1.76568 1.42169 1.93704 1.83890 1.31370 1.86335 1.58657 1.30200 1.44007 1.51944 1.21704 0.92067 0.90074 0.98382 1.21719 0.96311 0.91445 0.93279 1.45339 1.17116 1.42913 1.31883 1.20430 0.88821 0.80787 0.79337 1.90749 1.66521 1.30633 1.54399 1.21052 0.89466 0.93593 0.91921 0.86989 1.22682 1.00872 0.94671 1.04482 0.88839 0.96872 0.94857 0.92521 0.93803 0.93345 0.90105 0.90219 0.87241 0.89477 0.91322 0.76904 0.87941 0.90680 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.97 37.16 0.33 -2.98 16 2 C 0.26 6.02 2.46 -69.08 -0.17 5.85 16 3 H 0.07 1.61 4.61 -51.93 -0.24 1.37 16 4 C -0.53 -12.80 7.99 -34.44 -0.28 -13.07 16 5 H 0.06 1.48 7.33 -52.48 -0.38 1.09 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.88 -23.36 11.32 55.43 0.63 -22.73 16 8 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.99 -19.21 3.12 -115.85 -0.36 -19.57 16 13 C 0.11 1.78 9.28 59.85 0.56 2.33 16 14 S 2.78 51.23 5.84 -107.50 -0.63 50.60 16 15 O -1.00 -18.68 15.76 -57.17 -0.90 -19.58 16 16 O -0.97 -20.40 11.95 -57.17 -0.68 -21.08 16 17 N -1.01 -15.60 3.35 -107.90 -0.36 -15.96 16 18 C 0.10 1.17 6.55 -3.63 -0.02 1.15 16 19 C 0.10 0.92 7.34 -4.50 -0.03 0.88 16 20 N -0.72 -8.48 5.42 -61.45 -0.33 -8.81 16 21 C 0.52 8.28 7.34 -11.91 -0.09 8.19 16 22 O -0.55 -10.37 17.13 5.56 0.10 -10.28 16 23 C 0.15 2.49 3.69 -69.09 -0.25 2.23 16 24 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 25 C -0.17 -3.21 7.34 37.16 0.27 -2.93 16 26 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 29 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 32 H 0.08 1.37 7.02 -51.93 -0.36 1.00 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.13 6.94 -51.93 -0.36 0.77 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 3.91 8.80 -40.82 -0.36 3.55 16 38 H 0.10 2.18 3.94 -51.92 -0.20 1.97 16 39 H 0.07 1.39 7.79 -51.93 -0.40 0.99 16 40 H 0.08 1.59 6.56 -51.93 -0.34 1.25 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -30.78 322.70 -7.93 -38.71 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.45 Total: 5.77 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 0.22 Total: 3.25 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -0.43 Total: -67.07 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -1.49 Total: -50.93 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 51.23 SS G_CDS: -0.63 Total: 50.60 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.78 -7.93 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.172 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds