Wall clock time and date at job start Fri Apr 10 2020 14:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47250 * 2 1 4 4 C 1.50703 * 109.47029 * 119.99833 * 2 1 3 5 5 H 1.08005 * 120.00204 * 120.00074 * 4 2 1 6 6 C 1.37878 * 120.00172 * 300.00366 * 4 2 1 7 7 N 1.31521 * 119.99717 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00313 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47022 * 59.99507 * 8 6 4 10 10 H 1.48496 * 109.47315 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47252 * 300.00039 * 8 6 4 12 12 N 1.46493 * 109.47493 * 239.99679 * 2 1 3 13 13 C 1.46504 * 120.00404 * 300.00082 * 12 2 1 14 14 S 1.65604 * 120.00118 * 119.99798 * 12 2 1 15 15 O 1.42096 * 106.40268 * 156.45937 * 14 12 2 16 16 O 1.42104 * 106.40125 * 23.54547 * 14 12 2 17 17 N 1.65596 * 107.21944 * 270.00298 * 14 12 2 18 18 C 1.47266 * 121.35604 * 270.02246 * 17 14 12 19 19 C 1.52990 * 108.18887 * 118.47280 * 18 17 14 20 20 N 1.45645 * 110.76983 * 46.73089 * 19 18 17 21 21 C 1.33384 * 124.59126 * 338.08991 * 20 19 18 22 22 O 1.21284 * 118.48372 * 184.30275 * 21 20 19 23 23 C 1.47053 * 121.35130 * 89.99699 * 17 14 12 24 24 H 1.08997 * 109.56991 * 342.58389 * 23 17 14 25 25 C 1.53003 * 109.66346 * 102.87854 * 23 17 14 26 26 H 1.09003 * 109.47425 * 299.99797 * 1 2 3 27 27 H 1.09002 * 109.47037 * 60.00709 * 1 2 3 28 28 H 1.09007 * 109.46815 * 179.97438 * 1 2 3 29 29 H 0.97002 * 119.99492 * 180.02562 * 7 6 4 30 30 H 1.08991 * 109.47186 * 269.99925 * 13 12 2 31 31 H 1.09004 * 109.46689 * 30.00102 * 13 12 2 32 32 H 1.09002 * 109.47044 * 149.99399 * 13 12 2 33 33 H 1.09003 * 109.71818 * 238.15211 * 18 17 14 34 34 H 1.09001 * 109.71571 * 358.79919 * 18 17 14 35 35 H 1.08995 * 109.21745 * 286.39264 * 19 18 17 36 36 H 1.08994 * 109.21196 * 167.06043 * 19 18 17 37 37 H 0.96996 * 117.70501 * 158.38545 * 20 19 18 38 38 H 1.09000 * 109.46780 * 179.46271 * 25 23 17 39 39 H 1.08997 * 109.47030 * 299.46672 * 25 23 17 40 40 H 1.09004 * 109.47009 * 59.46561 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.8074 -1.1189 4.0078 10 1 1.8277 -0.4192 5.2205 11 1 1.8280 -2.5198 4.0083 12 7 2.0184 -0.6906 -1.1960 13 6 1.6645 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 3.7119 -0.8789 -2.9813 16 8 3.5795 1.1829 -1.5748 17 7 1.9608 0.8089 -3.3998 18 6 1.5598 0.0928 -4.6225 19 6 0.0396 -0.0771 -4.5996 20 7 -0.6148 1.1746 -4.2443 21 6 -0.0284 2.1752 -3.5855 22 8 -0.6999 3.1370 -3.2774 23 6 1.4277 2.1659 -3.2076 24 1 1.5355 2.4558 -2.1624 25 6 2.1935 3.1502 -4.0939 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7093 1.1618 3.4844 30 1 2.4158 -2.7377 -0.9716 31 1 0.6905 -2.3003 -0.9846 32 1 1.6239 -2.2852 -2.5001 33 1 1.8523 0.6703 -5.4996 34 1 2.0390 -0.8859 -4.6494 35 1 -0.2251 -0.8407 -3.8682 36 1 -0.3010 -0.3927 -5.5858 37 1 -1.5433 1.2868 -4.5012 38 1 1.7896 4.1532 -3.9561 39 1 3.2482 3.1422 -3.8188 40 1 2.0882 2.8564 -5.1383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:13 Heat of formation + Delta-G solvation = -98.618761 kcal Electronic energy + Delta-G solvation = -25549.130689 eV Core-core repulsion = 21912.231192 eV Total energy + Delta-G solvation = -3636.899497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.31067 -36.98607 -36.77224 -36.22555 -35.36305 -34.51589 -32.61499 -31.17918 -29.14011 -28.33299 -25.66473 -25.16565 -24.35706 -23.73960 -20.85689 -19.42567 -18.52879 -17.75914 -17.20179 -17.02725 -16.54087 -16.28224 -15.66757 -15.28395 -14.70727 -14.38059 -13.98673 -13.81202 -13.57800 -13.35622 -12.99311 -12.83770 -12.53734 -12.29593 -12.07314 -11.97359 -11.85941 -11.70550 -11.52324 -11.41293 -11.29001 -11.22913 -10.99829 -10.83211 -10.57737 -10.31698 -10.16386 -9.96155 -9.32404 -9.21907 -8.98295 -8.47055 -8.03948 -6.08315 -4.15865 0.96557 2.61690 3.05355 3.29399 3.31381 3.34396 3.37467 3.91596 4.36770 4.39455 4.55191 4.64014 4.87977 5.05560 5.11041 5.16140 5.22744 5.25317 5.47968 5.51973 5.64445 5.67776 5.97774 6.05320 6.08862 6.24805 6.33630 6.56462 6.70677 6.73644 6.77745 6.97808 7.22314 7.39470 7.58913 7.75242 8.01418 8.17191 8.24283 8.85846 9.50149 10.97178 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.005940 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.674517 B = 4712.435328 C = 5146.877746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.057 0.943 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.988 5.988 13 C 0.110 3.890 14 S 2.776 3.224 15 O -0.989 6.989 16 O -0.964 6.964 17 N -1.013 6.013 18 C 0.105 3.895 19 C 0.095 3.905 20 N -0.715 5.715 21 C 0.525 3.475 22 O -0.545 6.545 23 C 0.143 3.857 24 H 0.129 0.871 25 C -0.153 4.153 26 H 0.093 0.907 27 H 0.008 0.992 28 H 0.033 0.967 29 H 0.265 0.735 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.398 0.602 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -2.355 -16.071 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.831 5.831 13 C -0.036 4.036 14 S 2.786 3.214 15 O -0.973 6.973 16 O -0.948 6.948 17 N -0.851 5.851 18 C -0.022 4.022 19 C -0.031 4.031 20 N -0.367 5.367 21 C 0.310 3.690 22 O -0.422 6.422 23 C 0.033 3.967 24 H 0.147 0.853 25 C -0.212 4.212 26 H 0.112 0.888 27 H 0.027 0.973 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.233 0.767 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.535 -1.707 -15.685 15.852 hybrid contribution -0.561 -0.655 0.769 1.155 sum -2.095 -2.362 -14.916 15.247 Atomic orbital electron populations 1.22101 0.98187 0.99590 1.00616 1.18747 0.91289 0.92897 0.80493 0.92495 1.21259 1.31872 1.13115 0.89957 0.91978 1.24917 0.94915 0.94993 0.99019 1.69855 1.36275 1.22534 1.23996 0.86547 0.79351 0.79536 0.81899 1.20139 1.21183 1.20252 1.57779 1.69989 1.19790 1.35520 1.21150 1.01880 0.82039 0.98559 1.02210 0.73747 0.73187 0.72241 1.93536 1.68792 1.60194 1.74728 1.93615 1.73596 1.55794 1.71806 1.58972 1.67635 1.23663 1.34824 1.21712 0.93597 0.98858 0.87993 1.21769 0.93649 0.86206 1.01455 1.45224 1.15939 1.17028 1.58472 1.20210 0.90037 0.82090 0.76697 1.90779 1.63823 1.33870 1.53737 1.21062 0.89180 0.82874 1.03563 0.85307 1.22030 1.01246 0.98795 0.99094 0.88822 0.97342 0.94798 0.92552 0.93109 0.90925 0.93486 0.90145 0.87258 0.90940 0.89554 0.76670 0.90285 0.90484 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.95 37.16 0.33 -2.96 16 2 C 0.27 6.45 2.62 -69.09 -0.18 6.27 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.90 8.37 -34.44 -0.29 -14.19 16 5 H 0.06 1.64 7.65 -52.48 -0.40 1.24 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.99 -19.65 3.12 -115.86 -0.36 -20.01 16 13 C 0.11 1.83 9.53 59.85 0.57 2.40 16 14 S 2.78 51.82 6.09 -107.50 -0.65 51.16 16 15 O -0.99 -18.86 15.92 -57.17 -0.91 -19.77 16 16 O -0.96 -21.58 15.67 -57.17 -0.90 -22.48 16 17 N -1.01 -14.48 3.01 -107.71 -0.32 -14.80 16 18 C 0.10 1.05 6.40 -3.63 -0.02 1.02 16 19 C 0.10 0.81 7.34 -4.51 -0.03 0.77 16 20 N -0.71 -7.97 5.42 -61.33 -0.33 -8.30 16 21 C 0.52 7.85 7.10 -11.73 -0.08 7.76 16 22 O -0.55 -10.06 17.80 5.55 0.10 -9.96 16 23 C 0.14 2.14 2.95 -68.91 -0.20 1.94 16 24 H 0.13 2.25 7.49 -51.93 -0.39 1.86 16 25 C -0.15 -1.88 9.39 37.16 0.35 -1.53 16 26 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.18 6.43 -51.93 -0.33 0.84 16 32 H 0.05 0.61 7.79 -51.93 -0.40 0.21 16 33 H 0.08 0.65 7.51 -51.93 -0.39 0.26 16 34 H 0.11 1.02 7.07 -51.93 -0.37 0.65 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.40 3.84 8.80 -40.82 -0.36 3.48 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.62 7.50 -51.93 -0.39 0.23 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -33.71 334.19 -8.12 -41.82 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.73 Total: 2.28 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 0.35 Total: 3.12 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: -0.39 Total: -67.24 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -1.71 Total: -52.21 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.65 Total: 51.16 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.71 -8.12 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.794 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds