Wall clock time and date at job start Fri Apr 10 2020 14:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50533 * 1 3 3 H 1.11526 * 107.41076 * 2 1 4 4 C 1.50949 * 114.22964 * 116.62963 * 2 1 3 5 5 O 1.21062 * 118.78779 * 264.69468 * 4 2 1 6 6 N 1.32904 * 121.80844 * 84.41505 * 4 2 1 7 7 C 1.45061 * 133.21720 * 7.29769 * 6 4 2 8 8 C 1.53876 * 111.69228 * 329.47034 * 7 6 4 9 9 C 1.54654 * 108.47514 * 81.17309 * 8 7 6 10 10 N 1.46484 * 109.99124 * 302.19546 * 9 8 7 11 11 S 1.66098 * 119.18269 * 146.31510 * 10 9 8 12 12 O 1.42105 * 106.40148 * 209.10957 * 11 10 9 13 13 O 1.42094 * 106.40284 * 342.03261 * 11 10 9 14 14 N 1.65600 * 107.21622 * 95.57358 * 11 10 9 15 15 C 1.46499 * 120.00256 * 95.57222 * 14 11 10 16 16 C 1.46499 * 119.99727 * 275.57019 * 14 11 10 17 17 C 1.50700 * 109.47043 * 96.17358 * 16 14 11 18 18 H 1.08010 * 120.00218 * 4.86539 * 17 16 14 19 19 C 1.37880 * 120.00483 * 184.86070 * 17 16 14 20 20 N 1.31516 * 119.99567 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47092 * 60.00279 * 21 19 17 23 23 H 1.48498 * 109.46941 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47289 * 300.00123 * 21 19 17 25 25 H 1.09003 * 109.46969 * 313.92415 * 1 2 3 26 26 H 1.08995 * 109.47155 * 73.92545 * 1 2 3 27 27 H 1.08999 * 109.46904 * 193.92684 * 1 2 3 28 28 H 0.98156 * 112.98962 * 187.29326 * 6 4 2 29 29 H 1.08964 * 109.42950 * 209.25595 * 7 6 4 30 30 H 1.08946 * 109.44835 * 89.72895 * 7 6 4 31 31 H 1.06525 * 111.95076 * 313.69692 * 8 7 6 32 32 H 1.10654 * 106.89929 * 196.27208 * 8 7 6 33 33 H 1.08885 * 109.52520 * 182.06990 * 9 8 7 34 34 H 1.09026 * 109.31092 * 61.83600 * 9 8 7 35 35 H 1.09000 * 109.46695 * 89.99670 * 15 14 11 36 36 H 1.08998 * 109.47053 * 209.99811 * 15 14 11 37 37 H 1.08999 * 109.46862 * 330.00435 * 15 14 11 38 38 H 1.08997 * 109.47117 * 216.17170 * 16 14 11 39 39 H 1.09002 * 109.47719 * 336.17657 * 16 14 11 40 40 H 0.97001 * 119.99780 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5053 0.0000 0.0000 3 1 1.8390 1.0642 0.0000 4 6 2.1248 -0.6170 1.2305 5 8 2.4535 0.1072 2.1433 6 7 2.3121 -1.9284 1.3380 7 6 2.1591 -3.0330 0.4103 8 6 1.0487 -2.7611 -0.6197 9 6 1.6274 -1.8644 -1.7390 10 7 2.1449 -0.6195 -1.1661 11 16 3.4769 0.0962 -1.8535 12 8 4.1423 0.7925 -0.8087 13 8 4.1052 -0.9025 -2.6452 14 7 2.9252 1.2491 -2.9064 15 6 2.8160 2.6444 -2.4735 16 6 2.5463 0.8738 -4.2709 17 6 1.0571 0.6526 -4.3359 18 1 0.4428 0.8548 -3.4708 19 6 0.4785 0.1922 -5.4997 20 7 1.2263 -0.0534 -6.5532 21 14 -1.3676 -0.0812 -5.5804 22 1 -2.0699 1.1997 -5.3130 23 1 -1.7362 -0.5745 -6.9316 24 1 -1.7643 -1.0854 -4.5609 25 1 -0.3633 0.7129 0.7402 26 1 -0.3633 0.2845 -0.9874 27 1 -0.3633 -0.9975 0.2473 28 1 2.6165 -2.2002 2.2307 29 1 1.9057 -3.9376 0.9624 30 1 3.0959 -3.1911 -0.1230 31 1 0.1642 -2.3839 -0.1614 32 1 0.7942 -3.7334 -1.0826 33 1 0.8449 -1.6308 -2.4592 34 1 2.4414 -2.3907 -2.2380 35 1 3.7518 3.1634 -2.6811 36 1 2.0035 3.1300 -3.0140 37 1 2.6117 2.6778 -1.4034 38 1 2.8253 1.6724 -4.9582 39 1 3.0625 -0.0443 -4.5519 40 1 0.8194 -0.3776 -7.3719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408286811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:09 Heat of formation + Delta-G solvation = -97.160004 kcal Electronic energy + Delta-G solvation = -25718.936476 eV Core-core repulsion = 22082.100236 eV Total energy + Delta-G solvation = -3636.836240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17880 -37.05144 -36.70174 -35.53704 -35.28476 -34.83263 -32.55239 -31.82563 -30.03482 -27.83134 -25.86612 -25.13673 -24.52914 -22.34853 -21.16534 -19.71633 -18.65591 -17.65804 -17.03713 -16.74277 -16.57931 -16.35240 -15.52580 -15.15667 -14.71786 -14.39214 -14.18170 -13.73366 -13.53205 -13.37979 -13.16384 -12.86339 -12.41625 -12.32552 -12.23137 -12.19680 -11.86175 -11.72052 -11.51061 -11.45119 -11.21238 -11.18908 -10.96071 -10.81620 -10.57386 -10.54971 -10.15683 -9.97898 -9.84300 -9.05652 -8.71195 -8.56317 -8.08133 -6.17514 -4.24767 1.13670 2.70071 3.18543 3.23816 3.26360 3.27030 3.41211 4.03086 4.29057 4.46850 4.63228 4.78885 4.82138 5.01426 5.14708 5.16472 5.27163 5.34121 5.53682 5.60081 5.60456 5.70319 5.77952 5.99715 6.05740 6.18141 6.26766 6.29469 6.36053 6.50855 6.67201 6.82790 7.28347 7.36052 7.49689 7.57928 7.79197 8.08924 8.24991 8.80363 9.41155 10.90270 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.006945 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.235147 B = 4030.430329 C = 4664.210845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.100 0.900 4 C 0.526 3.474 5 O -0.544 6.544 6 N -0.722 5.722 7 C 0.122 3.878 8 C -0.151 4.151 9 C 0.113 3.887 10 N -0.995 5.995 11 S 2.778 3.222 12 O -0.989 6.989 13 O -0.974 6.974 14 N -0.995 5.995 15 C 0.104 3.896 16 C 0.244 3.756 17 C -0.539 4.539 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.383 0.617 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 -4.853 11.111 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 H 0.118 0.882 4 C 0.310 3.690 5 O -0.420 6.420 6 N -0.371 5.371 7 C -0.002 4.002 8 C -0.190 4.190 9 C -0.012 4.012 10 N -0.834 5.834 11 S 2.788 3.212 12 O -0.973 6.973 13 O -0.958 6.958 14 N -0.837 5.837 15 C -0.043 4.043 16 C 0.122 3.878 17 C -0.578 4.578 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.215 0.785 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.712 -4.649 11.203 12.250 hybrid contribution -1.384 -0.261 -0.140 1.415 sum -3.096 -4.910 11.063 12.493 Atomic orbital electron populations 1.21572 0.91520 1.03206 1.04529 1.20789 0.95890 0.97586 0.82350 0.88247 1.20486 0.78087 0.81624 0.88783 1.90709 1.51374 1.58649 1.41296 1.45532 1.68619 1.06358 1.16605 1.21403 0.99553 0.87432 0.91796 1.22671 0.98270 1.01429 0.96674 1.21795 1.00965 0.83492 0.94913 1.58364 1.49561 1.34946 1.40544 1.02124 0.73433 0.73106 0.72572 1.93589 1.72238 1.74368 1.57112 1.93561 1.73154 1.59325 1.69794 1.57671 1.82129 1.17960 1.25966 1.21272 1.01633 0.82599 0.98784 1.19221 0.95626 0.97348 0.75601 1.21496 0.92659 1.45279 0.98400 0.91900 1.24966 0.98161 0.95192 0.95540 1.69927 1.35570 1.44486 1.02640 0.86643 0.85325 0.78608 0.77303 1.20248 1.21251 1.20059 0.90697 0.89448 0.91318 0.78509 0.90164 0.91614 0.89361 0.89836 0.89696 0.88719 0.93677 0.90663 0.92700 0.94688 0.92987 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.99 35.92 0.32 -1.50 16 2 C 0.14 2.19 2.12 -70.08 -0.15 2.05 16 3 H 0.10 1.63 6.88 -50.47 -0.35 1.28 16 4 C 0.53 8.36 7.07 -11.69 -0.08 8.28 16 5 O -0.54 -10.45 17.66 5.74 0.10 -10.35 16 6 N -0.72 -8.94 5.14 -61.24 -0.31 -9.25 16 7 C 0.12 1.21 6.74 -4.36 -0.03 1.18 16 8 C -0.15 -1.57 5.42 -25.40 -0.14 -1.71 16 9 C 0.11 1.68 5.79 -3.18 -0.02 1.66 16 10 N -1.00 -16.56 2.84 -107.65 -0.31 -16.86 16 11 S 2.78 56.12 5.93 -107.50 -0.64 55.48 16 12 O -0.99 -21.42 15.93 -57.17 -0.91 -22.33 16 13 O -0.97 -22.03 15.20 -57.17 -0.87 -22.90 16 14 N -0.99 -20.48 3.23 -123.06 -0.40 -20.88 16 15 C 0.10 1.81 10.32 59.85 0.62 2.43 16 16 C 0.24 5.87 5.43 -5.19 -0.03 5.84 16 17 C -0.54 -13.27 9.37 -34.44 -0.32 -13.59 16 18 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -24.37 13.29 55.43 0.74 -23.64 16 21 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 0.72 5.26 -51.93 -0.27 0.45 16 28 H 0.38 4.12 8.61 -40.38 -0.35 3.77 16 29 H 0.08 0.53 8.14 -51.95 -0.42 0.10 16 30 H 0.07 0.71 7.91 -51.96 -0.41 0.30 16 31 H 0.09 0.86 4.92 -53.29 -0.26 0.60 16 32 H 0.08 0.68 8.27 -50.98 -0.42 0.26 16 33 H 0.08 1.36 8.13 -51.99 -0.42 0.94 16 34 H 0.09 1.49 6.79 -51.91 -0.35 1.14 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 37 H 0.05 0.87 7.17 -51.93 -0.37 0.50 16 38 H 0.04 0.88 8.12 -51.93 -0.42 0.46 16 39 H 0.05 1.38 6.98 -51.93 -0.36 1.01 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -33.06 332.57 -8.18 -41.24 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.65 Total: 3.81 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 0.08 Total: 6.19 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -0.28 Total: -70.63 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -1.68 Total: -55.58 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 56.12 SS G_CDS: -0.64 Total: 55.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.06 -8.18 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408286811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.922 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds