Wall clock time and date at job start Fri Apr 10 2020 14:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50533 * 1 3 3 H 1.11526 * 107.41076 * 2 1 4 4 C 1.50949 * 114.22964 * 116.62963 * 2 1 3 5 5 O 1.21062 * 118.78779 * 264.69468 * 4 2 1 6 6 N 1.32904 * 121.80844 * 84.41505 * 4 2 1 7 7 C 1.45061 * 133.21720 * 7.29769 * 6 4 2 8 8 C 1.53876 * 111.69228 * 329.47034 * 7 6 4 9 9 C 1.54654 * 108.47514 * 81.17309 * 8 7 6 10 10 N 1.46484 * 109.99124 * 302.19546 * 9 8 7 11 11 S 1.66098 * 119.18269 * 146.31510 * 10 9 8 12 12 O 1.42105 * 106.40148 * 209.10957 * 11 10 9 13 13 O 1.42094 * 106.40284 * 342.03261 * 11 10 9 14 14 N 1.65600 * 107.21622 * 95.57358 * 11 10 9 15 15 C 1.46499 * 120.00256 * 95.57222 * 14 11 10 16 16 C 1.46499 * 119.99727 * 275.57019 * 14 11 10 17 17 C 1.50700 * 109.47043 * 96.17358 * 16 14 11 18 18 H 1.08010 * 120.00218 * 4.86539 * 17 16 14 19 19 C 1.37880 * 120.00483 * 184.86070 * 17 16 14 20 20 N 1.31516 * 119.99567 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47092 * 60.00279 * 21 19 17 23 23 H 1.48498 * 109.46941 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47289 * 300.00123 * 21 19 17 25 25 H 1.09003 * 109.46969 * 313.92415 * 1 2 3 26 26 H 1.08995 * 109.47155 * 73.92545 * 1 2 3 27 27 H 1.08999 * 109.46904 * 193.92684 * 1 2 3 28 28 H 0.98156 * 112.98962 * 187.29326 * 6 4 2 29 29 H 1.08964 * 109.42950 * 209.25595 * 7 6 4 30 30 H 1.08946 * 109.44835 * 89.72895 * 7 6 4 31 31 H 1.06525 * 111.95076 * 313.69692 * 8 7 6 32 32 H 1.10654 * 106.89929 * 196.27208 * 8 7 6 33 33 H 1.08885 * 109.52520 * 182.06990 * 9 8 7 34 34 H 1.09026 * 109.31092 * 61.83600 * 9 8 7 35 35 H 1.09000 * 109.46695 * 89.99670 * 15 14 11 36 36 H 1.08998 * 109.47053 * 209.99811 * 15 14 11 37 37 H 1.08999 * 109.46862 * 330.00435 * 15 14 11 38 38 H 1.08997 * 109.47117 * 216.17170 * 16 14 11 39 39 H 1.09002 * 109.47719 * 336.17657 * 16 14 11 40 40 H 0.97001 * 119.99780 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5053 0.0000 0.0000 3 1 1.8390 1.0642 0.0000 4 6 2.1248 -0.6170 1.2305 5 8 2.4535 0.1072 2.1433 6 7 2.3121 -1.9284 1.3380 7 6 2.1591 -3.0330 0.4103 8 6 1.0487 -2.7611 -0.6197 9 6 1.6274 -1.8644 -1.7390 10 7 2.1449 -0.6195 -1.1661 11 16 3.4769 0.0962 -1.8535 12 8 4.1423 0.7925 -0.8087 13 8 4.1052 -0.9025 -2.6452 14 7 2.9252 1.2491 -2.9064 15 6 2.8160 2.6444 -2.4735 16 6 2.5463 0.8738 -4.2709 17 6 1.0571 0.6526 -4.3359 18 1 0.4428 0.8548 -3.4708 19 6 0.4785 0.1922 -5.4997 20 7 1.2263 -0.0534 -6.5532 21 14 -1.3676 -0.0812 -5.5804 22 1 -2.0699 1.1997 -5.3130 23 1 -1.7362 -0.5745 -6.9316 24 1 -1.7643 -1.0854 -4.5609 25 1 -0.3633 0.7129 0.7402 26 1 -0.3633 0.2845 -0.9874 27 1 -0.3633 -0.9975 0.2473 28 1 2.6165 -2.2002 2.2307 29 1 1.9057 -3.9376 0.9624 30 1 3.0959 -3.1911 -0.1230 31 1 0.1642 -2.3839 -0.1614 32 1 0.7942 -3.7334 -1.0826 33 1 0.8449 -1.6308 -2.4592 34 1 2.4414 -2.3907 -2.2380 35 1 3.7518 3.1634 -2.6811 36 1 2.0035 3.1300 -3.0140 37 1 2.6117 2.6778 -1.4034 38 1 2.8253 1.6724 -4.9582 39 1 3.0625 -0.0443 -4.5519 40 1 0.8194 -0.3776 -7.3719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408286811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:07 Heat of formation + Delta-G solvation = -123.614946 kcal Electronic energy + Delta-G solvation = -25720.083649 eV Core-core repulsion = 22082.100236 eV Total energy + Delta-G solvation = -3637.983413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.35163 -38.53599 -38.13551 -37.25539 -37.00486 -35.92088 -34.46684 -32.93129 -31.12861 -29.65785 -26.93158 -26.80476 -25.63376 -24.18919 -22.26333 -20.95803 -19.99693 -19.16296 -18.57963 -18.41980 -17.91541 -17.70338 -17.06134 -16.50814 -16.25652 -15.70066 -15.33195 -15.20469 -14.99917 -14.69448 -14.47226 -14.15587 -13.96858 -13.86608 -13.58552 -13.48853 -13.33068 -13.05775 -12.98324 -12.92155 -12.87181 -12.58728 -12.44733 -12.33385 -12.15640 -11.91385 -11.71837 -11.56390 -11.15994 -10.54480 -10.10907 -10.03075 -9.76499 -8.13206 -6.27726 -0.45680 1.45183 1.48419 1.50359 1.57755 1.87510 2.29536 2.43500 2.47383 3.18174 3.21462 3.37320 3.68602 3.84912 3.90986 4.03744 4.17560 4.28719 4.29989 4.62752 4.64431 4.72262 4.74911 4.79234 4.86013 4.99829 4.99896 5.09086 5.17334 5.26456 5.42903 5.44982 5.60453 5.72423 5.77118 5.91601 6.12397 6.43013 6.84285 7.10862 7.42798 8.94958 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.006945 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.235147 B = 4030.430329 C = 4664.210845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.143 3.857 3 H 0.083 0.917 4 C 0.520 3.480 5 O -0.586 6.586 6 N -0.711 5.711 7 C 0.115 3.885 8 C -0.144 4.144 9 C 0.105 3.895 10 N -0.988 5.988 11 S 2.786 3.214 12 O -1.006 7.006 13 O -1.005 7.005 14 N -1.001 6.001 15 C 0.097 3.903 16 C 0.258 3.742 17 C -0.537 4.537 18 H 0.076 0.924 19 C 0.013 3.987 20 N -0.930 5.930 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.293 1.293 24 H -0.254 1.254 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.394 0.606 29 H 0.128 0.872 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.016 0.984 39 H 0.021 0.979 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 -6.144 12.669 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.033 3.967 3 H 0.101 0.899 4 C 0.305 3.695 5 O -0.466 6.466 6 N -0.359 5.359 7 C -0.008 4.008 8 C -0.183 4.183 9 C -0.019 4.019 10 N -0.829 5.829 11 S 2.797 3.203 12 O -0.990 6.990 13 O -0.989 6.989 14 N -0.843 5.843 15 C -0.049 4.049 16 C 0.135 3.865 17 C -0.576 4.576 18 H 0.094 0.906 19 C -0.186 4.186 20 N -0.570 5.570 21 Si 0.784 3.216 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.178 1.178 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.227 0.773 29 H 0.146 0.854 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.039 0.961 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.067 -5.960 12.777 14.673 hybrid contribution -0.582 0.112 -0.612 0.852 sum -4.649 -5.848 12.165 14.276 Atomic orbital electron populations 1.21592 0.88885 1.05065 1.04725 1.20994 0.97762 0.96534 0.81375 0.89887 1.20536 0.78054 0.82603 0.88329 1.90690 1.53333 1.59954 1.42599 1.45540 1.66936 1.05736 1.17684 1.21718 0.99119 0.87980 0.91966 1.22654 0.98458 1.01765 0.95429 1.21974 1.00090 0.83202 0.96632 1.58079 1.48908 1.35361 1.40561 1.01638 0.73946 0.72609 0.72115 1.93563 1.73280 1.74840 1.57293 1.93515 1.74545 1.60210 1.70625 1.57585 1.82287 1.19576 1.24864 1.21478 1.02515 0.81068 0.99829 1.18815 0.95511 0.95233 0.76960 1.21728 0.92749 1.44396 0.98687 0.90623 1.25817 1.02796 0.94910 0.95094 1.70077 1.37683 1.45889 1.03340 0.85586 0.79583 0.79057 0.77354 1.19665 1.21928 1.17836 0.89181 0.89995 0.89152 0.77347 0.85392 0.92563 0.87972 0.86562 0.90975 0.90272 0.92708 0.90050 0.91050 0.96643 0.96126 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.99 71.18 0.64 -2.48 16 2 C 0.14 4.16 2.12 43.48 0.09 4.25 16 3 H 0.08 2.68 6.88 -1.01 -0.01 2.68 16 4 C 0.52 15.79 7.07 88.03 0.62 16.41 16 5 O -0.59 -22.17 17.66 -2.36 -0.04 -22.21 16 6 N -0.71 -15.81 5.14 -467.20 -2.40 -18.21 16 7 C 0.11 1.86 6.74 86.94 0.59 2.45 16 8 C -0.14 -2.47 5.42 31.45 0.17 -2.30 16 9 C 0.11 2.98 5.79 86.95 0.50 3.48 16 10 N -0.99 -32.16 2.84 -494.48 -1.40 -33.56 16 11 S 2.79 114.36 5.93 -56.49 -0.34 114.02 16 12 O -1.01 -44.07 15.93 -128.00 -2.04 -46.11 16 13 O -1.00 -46.94 15.20 -128.00 -1.95 -48.88 16 14 N -1.00 -41.91 3.23 -543.24 -1.75 -43.67 16 15 C 0.10 3.36 10.32 127.77 1.32 4.68 16 16 C 0.26 12.79 5.43 85.63 0.46 13.26 16 17 C -0.54 -26.38 9.37 25.60 0.24 -26.14 16 18 H 0.08 3.46 7.81 -2.91 -0.02 3.44 16 19 C 0.01 0.68 5.46 84.66 0.46 1.14 16 20 N -0.93 -51.95 13.29 21.45 0.28 -51.67 16 21 Si 0.96 39.12 29.54 68.60 2.03 41.15 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 24 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.09 1.54 5.26 -2.39 -0.01 1.53 16 28 H 0.39 7.44 8.61 -91.84 -0.79 6.65 16 29 H 0.13 0.98 8.14 -2.41 -0.02 0.96 16 30 H 0.06 1.08 7.91 -2.42 -0.02 1.06 16 31 H 0.10 1.51 4.92 -3.66 -0.02 1.49 16 32 H 0.12 1.34 8.27 -1.50 -0.01 1.33 16 33 H 0.07 2.22 8.13 -2.45 -0.02 2.20 16 34 H 0.08 2.48 6.79 -2.37 -0.02 2.47 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 37 H 0.07 2.23 7.17 -2.39 -0.02 2.21 16 38 H 0.02 0.81 8.12 -2.39 -0.02 0.80 16 39 H 0.02 1.15 6.98 -2.39 -0.02 1.13 16 40 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -73.25 332.57 -2.23 -75.47 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.28 Total: 18.92 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.10 Total: 14.75 kcal Atomic # 7 Polarization: -141.84 SS G_CDS: -5.27 Total: -147.11 kcal Atomic # 8 Polarization: -113.18 SS G_CDS: -4.03 Total: -117.20 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: 114.36 SS G_CDS: -0.34 Total: 114.02 kcal Total: -73.25 -2.23 -75.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408286811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.140 kcal (2) G-P(sol) polarization free energy of solvation -73.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds