Wall clock time and date at job start Fri Apr 10 2020 14:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.70385 * 2 1 4 4 C 1.53352 * 109.67365 * 239.48586 * 2 1 3 5 5 C 1.52912 * 108.80866 * 172.82153 * 4 2 1 6 6 N 1.45757 * 110.49017 * 50.66955 * 5 4 2 7 7 C 1.33348 * 124.10434 * 340.94905 * 6 5 4 8 8 O 1.21281 * 118.24216 * 182.17947 * 7 6 5 9 9 C 1.50177 * 123.51043 * 2.19663 * 7 6 5 10 10 H 1.09006 * 109.39641 * 102.46318 * 9 7 6 11 11 N 1.46501 * 109.40264 * 222.29087 * 9 7 6 12 12 S 1.65602 * 119.99903 * 263.14943 * 11 9 7 13 13 O 1.42102 * 106.40262 * 50.09830 * 12 11 9 14 14 O 1.42095 * 106.40242 * 183.01548 * 12 11 9 15 15 N 1.65600 * 107.21887 * 296.55818 * 12 11 9 16 16 C 1.46494 * 119.99813 * 275.58775 * 15 12 11 17 17 C 1.46493 * 119.99923 * 95.58939 * 15 12 11 18 18 C 1.50699 * 109.47569 * 96.47460 * 17 15 12 19 19 H 1.08000 * 119.99637 * 4.93875 * 18 17 15 20 20 C 1.37875 * 120.00446 * 184.93888 * 18 17 15 21 21 N 1.31513 * 119.99891 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00217 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47274 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46986 * 120.00209 * 22 20 18 25 25 H 1.48495 * 109.47532 * 240.00462 * 22 20 18 26 26 H 1.08999 * 109.47515 * 180.51015 * 1 2 3 27 27 H 1.08992 * 109.47244 * 300.51855 * 1 2 3 28 28 H 1.09009 * 109.46626 * 60.51272 * 1 2 3 29 29 H 1.08995 * 109.60273 * 52.97664 * 4 2 1 30 30 H 1.08999 * 109.59771 * 292.65638 * 4 2 1 31 31 H 1.09000 * 109.30258 * 170.98142 * 5 4 2 32 32 H 1.09003 * 109.30262 * 290.35714 * 5 4 2 33 33 H 0.96998 * 117.94603 * 160.92678 * 6 5 4 34 34 H 0.96994 * 120.00151 * 83.14886 * 11 9 7 35 35 H 1.08994 * 109.47730 * 90.00080 * 16 15 12 36 36 H 1.08999 * 109.47181 * 210.00444 * 16 15 12 37 37 H 1.09010 * 109.47099 * 329.99863 * 16 15 12 38 38 H 1.09008 * 109.47211 * 216.47489 * 17 15 12 39 39 H 1.08996 * 109.47484 * 336.47005 * 17 15 12 40 40 H 0.97001 * 120.00084 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0463 -0.7332 -1.2440 5 6 3.5646 -0.5676 -1.3193 6 7 4.1803 -0.9235 -0.0470 7 6 3.5229 -0.9805 1.1118 8 8 4.1497 -1.2498 2.1146 9 6 2.0480 -0.7294 1.2415 10 1 1.5262 -1.6812 1.3416 11 7 1.7965 0.0907 2.4292 12 16 1.3549 -0.6289 3.8539 13 8 2.2935 -1.6705 4.0851 14 8 1.1186 0.4238 4.7786 15 7 -0.1067 -1.3645 3.5991 16 6 -1.3460 -0.5927 3.7197 17 6 -0.1603 -2.7870 3.2533 18 6 -0.4111 -3.5978 4.4987 19 1 -0.5990 -3.0998 5.4384 20 6 -0.4006 -4.9752 4.4384 21 7 -0.1713 -5.5816 3.2942 22 14 -0.7108 -5.9800 5.9822 23 1 -0.9401 -5.0660 7.1300 24 1 -1.9087 -6.8350 5.7839 25 1 0.4691 -6.8377 6.2600 26 1 -0.3634 -1.0276 0.0091 27 1 -0.3633 0.5218 0.8852 28 1 -0.3633 0.5059 -0.8946 29 1 1.5872 -0.3075 -2.1362 30 1 1.7969 -1.7920 -1.1742 31 1 3.9590 -1.2136 -2.1036 32 1 3.8026 0.4692 -1.5571 33 1 5.1275 -1.1322 -0.0430 34 1 1.8886 1.0550 2.3810 35 1 -1.6006 -0.1607 2.7520 36 1 -2.1521 -1.2488 4.0482 37 1 -1.2074 0.2056 4.4489 38 1 -0.9670 -2.9575 2.5402 39 1 0.7878 -3.0888 2.8082 40 1 -0.1644 -6.5506 3.2517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443093830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:38 Heat of formation + Delta-G solvation = -144.435202 kcal Electronic energy + Delta-G solvation = -25114.160868 eV Core-core repulsion = 21475.274622 eV Total energy + Delta-G solvation = -3638.886247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49240 -38.24134 -37.96300 -37.21541 -36.77576 -36.32178 -34.50212 -33.42672 -29.86855 -29.66260 -28.14649 -26.78931 -24.36008 -24.14526 -22.54971 -20.82454 -20.21043 -18.96843 -18.48079 -18.28980 -18.14525 -17.46630 -17.31443 -16.77618 -16.21542 -15.61270 -15.27955 -15.24371 -15.07592 -14.88080 -14.19116 -14.04981 -13.89446 -13.70790 -13.38749 -13.30377 -13.13754 -13.01567 -12.97116 -12.91303 -12.61901 -12.45965 -12.44907 -12.19913 -12.00919 -11.84043 -11.77044 -11.63331 -11.38813 -10.60396 -10.29716 -9.98791 -9.78140 -8.21373 -6.32414 -0.36941 1.36238 1.40050 1.50777 1.54661 2.08542 2.30140 2.39930 2.67730 3.10251 3.44827 3.49013 3.62258 3.81181 3.89914 4.04583 4.19310 4.44685 4.53907 4.61794 4.70920 4.74152 4.86362 4.91676 5.02316 5.07258 5.11113 5.17495 5.18761 5.38225 5.45100 5.52585 5.69816 5.84649 5.90855 6.08319 6.11386 6.33500 6.75981 7.25028 7.36362 8.86384 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.005575 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.261452 B = 5021.407034 C = 5364.248432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.106 0.894 4 C -0.133 4.133 5 C 0.103 3.897 6 N -0.711 5.711 7 C 0.488 3.512 8 O -0.580 6.580 9 C 0.147 3.853 10 H 0.094 0.906 11 N -1.095 6.095 12 S 2.790 3.210 13 O -0.996 6.996 14 O -1.013 7.013 15 N -0.998 5.998 16 C 0.088 3.912 17 C 0.274 3.726 18 C -0.552 4.552 19 H 0.051 0.949 20 C 0.013 3.987 21 N -0.921 5.921 22 Si 0.955 3.045 23 H -0.270 1.270 24 H -0.265 1.265 25 H -0.283 1.283 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.402 0.598 34 H 0.426 0.574 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.014 0.986 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 14.482 -16.471 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.125 0.875 4 C -0.171 4.171 5 C -0.020 4.020 6 N -0.363 5.363 7 C 0.272 3.728 8 O -0.459 6.459 9 C 0.036 3.964 10 H 0.112 0.888 11 N -0.856 5.856 12 S 2.798 3.202 13 O -0.979 6.979 14 O -0.997 6.997 15 N -0.841 5.841 16 C -0.057 4.057 17 C 0.150 3.850 18 C -0.591 4.591 19 H 0.070 0.930 20 C -0.187 4.187 21 N -0.561 5.561 22 Si 0.780 3.220 23 H -0.195 1.195 24 H -0.190 1.190 25 H -0.209 1.209 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.146 0.854 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.238 0.762 34 H 0.262 0.738 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.032 0.968 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.532 14.049 -15.207 20.760 hybrid contribution 0.339 -0.777 0.805 1.169 sum 1.870 13.273 -14.402 19.674 Atomic orbital electron populations 1.21868 0.92840 1.02415 1.03451 1.21606 0.97820 1.00523 0.90842 0.87537 1.22069 0.94616 1.01616 0.98831 1.21776 0.93619 1.02930 0.83658 1.45578 1.13591 1.69341 1.07836 1.21066 0.91525 0.76694 0.83555 1.90861 1.68719 1.48862 1.37449 1.20782 0.91128 0.96377 0.88113 0.88822 1.55577 1.84968 1.18309 1.26766 1.01513 0.73163 0.72175 0.73393 1.93635 1.61734 1.58315 1.84217 1.93492 1.86586 1.58488 1.61162 1.57472 1.21413 1.18983 1.86226 1.21609 0.86274 0.95443 1.02360 1.18634 0.96629 0.74654 0.95076 1.21886 1.48827 0.92150 0.96263 0.93024 1.25726 0.94753 0.98883 0.99334 1.69998 1.49971 1.09810 1.26303 0.85562 0.78078 0.78651 0.79745 1.19475 1.19034 1.20926 0.93372 0.92402 0.89120 0.85393 0.91758 0.87920 0.88863 0.76228 0.73775 0.90179 0.90929 0.91125 0.94763 0.96770 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.12 71.98 0.66 -1.67 16 2 C -0.09 -1.44 2.37 -10.67 -0.03 -1.46 16 3 H 0.11 1.28 8.12 -2.39 -0.02 1.26 16 4 C -0.13 -1.54 5.31 30.68 0.16 -1.38 16 5 C 0.10 1.08 7.17 86.49 0.62 1.70 16 6 N -0.71 -15.06 5.45 -467.33 -2.55 -17.61 16 7 C 0.49 15.88 7.45 87.71 0.65 16.53 16 8 O -0.58 -26.19 16.06 11.58 0.19 -26.01 16 9 C 0.15 4.27 2.28 44.09 0.10 4.37 16 10 H 0.09 3.26 6.79 -2.38 -0.02 3.25 16 11 N -1.09 -34.01 5.02 -173.17 -0.87 -34.88 16 12 S 2.79 120.48 5.99 -56.49 -0.34 120.14 16 13 O -1.00 -55.02 15.25 -121.41 -1.85 -56.88 16 14 O -1.01 -45.10 16.86 -128.00 -2.16 -47.26 16 15 N -1.00 -41.91 3.23 -543.25 -1.75 -43.66 16 16 C 0.09 2.87 10.70 127.77 1.37 4.24 16 17 C 0.27 14.01 4.82 85.63 0.41 14.42 16 18 C -0.55 -32.05 9.37 25.60 0.24 -31.81 16 19 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 20 C 0.01 0.74 5.46 84.65 0.46 1.20 16 21 N -0.92 -54.91 13.29 21.45 0.28 -54.63 16 22 Si 0.95 45.95 29.54 68.60 2.03 47.97 16 23 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.97 7.78 -2.39 -0.02 0.95 16 28 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.40 7.92 8.80 -92.71 -0.82 7.10 16 34 H 0.43 10.14 8.86 -96.75 -0.86 9.28 16 35 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16 36 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 37 H 0.07 2.21 7.08 -2.38 -0.02 2.19 16 38 H 0.03 1.71 8.12 -2.38 -0.02 1.69 16 39 H 0.01 0.81 6.60 -2.39 -0.02 0.80 16 40 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -87.40 339.15 -2.98 -90.38 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.61 Total: 16.28 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 4.65 Total: 6.15 kcal Atomic # 7 Polarization: -145.89 SS G_CDS: -4.88 Total: -150.78 kcal Atomic # 8 Polarization: -126.32 SS G_CDS: -3.82 Total: -130.14 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 16 Polarization: 120.48 SS G_CDS: -0.34 Total: 120.14 kcal Total: -87.40 -2.98 -90.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443093830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.057 kcal (2) G-P(sol) polarization free energy of solvation -87.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds