Wall clock time and date at job start Fri Apr 10 2020 14:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.66927 * 2 1 4 4 C 1.53342 * 109.70459 * 120.51856 * 2 1 3 5 5 C 1.52920 * 108.67596 * 187.28692 * 4 2 1 6 6 N 1.45752 * 110.48377 * 309.24167 * 5 4 2 7 7 C 1.33350 * 124.10910 * 19.07985 * 6 5 4 8 8 O 1.21286 * 118.25080 * 177.77262 * 7 6 5 9 9 C 1.50179 * 123.50577 * 357.77537 * 7 6 5 10 10 H 1.09004 * 109.33427 * 137.67213 * 9 7 6 11 11 N 1.46502 * 109.39957 * 257.44988 * 9 7 6 12 12 S 1.65598 * 120.00204 * 265.43218 * 11 9 7 13 13 O 1.42100 * 106.39953 * 311.45568 * 12 11 9 14 14 O 1.42105 * 106.40088 * 178.54259 * 12 11 9 15 15 N 1.65593 * 107.21993 * 65.00171 * 12 11 9 16 16 C 1.46502 * 119.99605 * 269.99784 * 15 12 11 17 17 C 1.46499 * 120.00395 * 90.00069 * 15 12 11 18 18 C 1.50701 * 109.46992 * 264.99836 * 17 15 12 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 H 1.09000 * 109.47149 * 180.49578 * 1 2 3 27 27 H 1.08996 * 109.47499 * 300.50148 * 1 2 3 28 28 H 1.09004 * 109.46930 * 60.49939 * 1 2 3 29 29 H 1.09003 * 109.60183 * 307.03752 * 4 2 1 30 30 H 1.08995 * 109.60441 * 67.35970 * 4 2 1 31 31 H 1.08997 * 109.30316 * 69.55327 * 5 4 2 32 32 H 1.09003 * 109.29631 * 189.14185 * 5 4 2 33 33 H 0.97004 * 117.94746 * 199.07525 * 6 5 4 34 34 H 0.97004 * 119.99921 * 85.42881 * 11 9 7 35 35 H 1.09000 * 109.47587 * 270.00096 * 16 15 12 36 36 H 1.08997 * 109.47205 * 30.00247 * 16 15 12 37 37 H 1.09003 * 109.46728 * 150.00070 * 16 15 12 38 38 H 1.09002 * 109.47391 * 144.99826 * 17 15 12 39 39 H 1.09001 * 109.46813 * 24.99883 * 17 15 12 40 40 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0265 0.0000 4 6 2.0470 -0.7331 1.2436 5 6 3.5649 -0.5629 1.3167 6 7 4.1799 -0.9183 0.0440 7 6 3.5212 -0.9781 -1.1140 8 8 4.1475 -1.2459 -2.1175 9 6 2.0454 -0.7314 -1.2419 10 1 1.8566 -0.1218 -2.1256 11 7 1.3477 -2.0126 -1.3767 12 16 0.9894 -2.6061 -2.8805 13 8 0.3880 -1.5387 -3.6003 14 8 0.3540 -3.8606 -2.6758 15 7 2.4274 -2.9281 -3.6359 16 6 3.0807 -1.8918 -4.4394 17 6 3.0462 -4.2490 -3.5008 18 6 4.0540 -4.2195 -2.3808 19 1 4.2169 -3.3080 -1.8249 20 6 4.7674 -5.3564 -2.0650 21 7 4.5686 -6.4664 -2.7417 22 14 6.0160 -5.3198 -0.6762 23 1 5.3343 -4.9601 0.5931 24 1 6.6434 -6.6588 -0.5393 25 1 7.0635 -4.3115 -0.9786 26 1 -0.3633 -1.0276 0.0089 27 1 -0.3634 0.5216 0.8854 28 1 -0.3633 0.5061 -0.8945 29 1 1.5880 -0.3077 2.1361 30 1 1.7982 -1.7920 1.1738 31 1 3.8002 0.4748 1.5531 32 1 3.9627 -1.2097 2.0987 33 1 5.1278 -1.1244 0.0389 34 1 1.0958 -2.5133 -0.5850 35 1 2.7334 -1.9585 -5.4704 36 1 2.8342 -0.9098 -4.0358 37 1 4.1607 -2.0362 -4.4098 38 1 3.5463 -4.5130 -4.4327 39 1 2.2776 -4.9893 -3.2786 40 1 5.0707 -7.2661 -2.5198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443093832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:45 Heat of formation + Delta-G solvation = -138.280015 kcal Electronic energy + Delta-G solvation = -25852.262274 eV Core-core repulsion = 22213.642936 eV Total energy + Delta-G solvation = -3638.619338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43076 -38.32869 -37.98961 -37.09049 -36.90799 -36.03847 -34.40185 -33.18655 -29.88318 -29.59147 -28.16529 -26.69600 -24.44568 -24.14150 -22.30380 -20.79573 -19.98833 -18.98156 -18.55307 -18.20403 -17.87281 -17.62292 -16.98360 -16.73848 -16.16798 -15.97012 -15.25279 -15.11191 -14.98685 -14.60786 -14.10274 -14.00088 -13.90293 -13.78461 -13.38823 -13.35733 -13.19660 -13.07884 -12.97678 -12.88551 -12.63067 -12.44090 -12.36740 -12.09645 -11.92989 -11.77031 -11.63576 -11.49813 -11.32304 -10.53529 -10.13645 -9.81454 -9.64389 -8.10507 -6.20246 -0.29425 1.36556 1.41832 1.48273 1.55756 2.18844 2.44610 2.48349 2.62474 3.20077 3.41260 3.52729 3.69626 3.79105 3.92797 4.12151 4.28308 4.51923 4.57224 4.60662 4.71383 4.80521 4.90584 4.92838 5.01615 5.09871 5.16302 5.21013 5.30191 5.36954 5.50768 5.58889 5.81671 5.87436 5.98630 6.08858 6.23323 6.50186 6.96205 7.41518 7.48499 8.98376 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.008624 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.946346 B = 3245.881845 C = 4466.256161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 H 0.113 0.887 4 C -0.134 4.134 5 C 0.105 3.895 6 N -0.717 5.717 7 C 0.488 3.512 8 O -0.550 6.550 9 C 0.144 3.856 10 H 0.113 0.887 11 N -1.096 6.096 12 S 2.801 3.199 13 O -1.001 7.001 14 O -1.015 7.015 15 N -0.990 5.990 16 C 0.127 3.873 17 C 0.262 3.738 18 C -0.529 4.529 19 H 0.094 0.906 20 C -0.003 4.003 21 N -0.939 5.939 22 Si 0.961 3.039 23 H -0.261 1.261 24 H -0.291 1.291 25 H -0.272 1.272 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.397 0.603 34 H 0.422 0.578 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.010 0.990 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 17.156 12.044 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.131 0.869 4 C -0.172 4.172 5 C -0.018 4.018 6 N -0.369 5.369 7 C 0.272 3.728 8 O -0.426 6.426 9 C 0.033 3.967 10 H 0.131 0.869 11 N -0.858 5.858 12 S 2.809 3.191 13 O -0.984 6.984 14 O -1.000 7.000 15 N -0.831 5.831 16 C -0.019 4.019 17 C 0.138 3.862 18 C -0.569 4.569 19 H 0.112 0.888 20 C -0.200 4.200 21 N -0.580 5.580 22 Si 0.786 3.214 23 H -0.186 1.186 24 H -0.217 1.217 25 H -0.197 1.197 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.232 0.768 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.028 0.972 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.010 16.875 10.958 20.735 hybrid contribution 1.532 -1.088 0.667 1.994 sum -3.478 15.786 11.625 19.911 Atomic orbital electron populations 1.21818 0.93227 1.02369 1.03088 1.21571 0.97537 1.00188 0.91606 0.86916 1.22038 0.94479 1.01335 0.99350 1.21669 0.93793 1.02369 0.84006 1.45562 1.13398 1.69789 1.08184 1.20907 0.91155 0.77093 0.83668 1.90863 1.68587 1.46953 1.36208 1.20950 0.87136 0.84976 1.03597 0.86948 1.55702 1.73177 1.31199 1.25763 1.01117 0.72923 0.71773 0.73283 1.93528 1.75516 1.57251 1.72108 1.93540 1.75628 1.44556 1.86254 1.57265 1.41615 1.20910 1.63317 1.21164 0.98743 0.89069 0.92939 1.18701 0.92770 0.78126 0.96637 1.22255 1.20544 0.97563 1.16503 0.88818 1.25911 0.99473 0.95153 0.99462 1.70102 1.43294 1.01845 1.42761 0.85568 0.79158 0.76768 0.79891 1.18609 1.21748 1.19693 0.93110 0.89508 0.92756 0.86133 0.92140 0.88843 0.89574 0.76844 0.74130 0.93817 0.91251 0.92051 0.97159 0.96588 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.92 71.98 0.64 -1.59 16 2 C -0.09 -1.39 2.60 -10.66 -0.03 -1.42 16 3 H 0.11 1.29 8.13 -2.38 -0.02 1.27 16 4 C -0.13 -1.73 5.29 30.68 0.16 -1.57 16 5 C 0.10 1.41 7.17 86.49 0.62 2.03 16 6 N -0.72 -16.66 5.45 -467.32 -2.55 -19.21 16 7 C 0.49 14.65 6.68 87.72 0.59 15.24 16 8 O -0.55 -21.29 11.48 -3.05 -0.03 -21.33 16 9 C 0.14 3.72 2.63 44.10 0.12 3.84 16 10 H 0.11 2.98 7.07 -2.38 -0.02 2.96 16 11 N -1.10 -34.14 4.48 -173.11 -0.78 -34.91 16 12 S 2.80 114.36 6.09 -56.49 -0.34 114.01 16 13 O -1.00 -40.67 16.55 -128.00 -2.12 -42.78 16 14 O -1.02 -48.99 16.69 -128.00 -2.14 -51.12 16 15 N -0.99 -44.80 2.72 -543.22 -1.48 -46.28 16 16 C 0.13 5.06 8.26 127.77 1.06 6.12 16 17 C 0.26 14.33 5.41 85.63 0.46 14.79 16 18 C -0.53 -29.43 9.33 25.60 0.24 -29.19 16 19 H 0.09 4.90 4.65 -2.91 -0.01 4.89 16 20 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 21 N -0.94 -57.49 13.29 21.45 0.28 -57.21 16 22 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H 0.05 0.88 7.04 -2.39 -0.02 0.86 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.01 6.86 -2.39 -0.02 0.99 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.40 9.60 8.80 -92.71 -0.82 8.78 16 34 H 0.42 11.75 7.09 -96.74 -0.69 11.07 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 2.48 6.66 -2.39 -0.02 2.46 16 37 H 0.06 2.63 7.63 -2.39 -0.02 2.61 16 38 H 0.01 0.61 8.11 -2.39 -0.02 0.59 16 39 H 0.02 0.97 6.91 -2.39 -0.02 0.96 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -77.77 325.46 -3.22 -80.99 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.42 Total: 23.13 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 4.32 Total: 8.56 kcal Atomic # 7 Polarization: -153.10 SS G_CDS: -4.52 Total: -157.61 kcal Atomic # 8 Polarization: -110.95 SS G_CDS: -4.29 Total: -115.23 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 114.36 SS G_CDS: -0.34 Total: 114.01 kcal Total: -77.77 -3.22 -80.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443093832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.286 kcal (2) G-P(sol) polarization free energy of solvation -77.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds