Wall clock time and date at job start Fri Apr 10 2020 14:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46984 * 2 1 4 4 C 1.50701 * 109.47349 * 119.99553 * 2 1 3 5 5 H 1.07995 * 120.00260 * 120.00519 * 4 2 1 6 6 C 1.37883 * 119.99763 * 300.00192 * 4 2 1 7 7 N 1.31512 * 119.99839 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46996 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47012 * 119.99850 * 8 6 4 11 11 H 1.48502 * 109.46882 * 240.00424 * 8 6 4 12 12 N 1.46503 * 109.47442 * 239.99799 * 2 1 3 13 13 C 1.46494 * 119.99732 * 299.99699 * 12 2 1 14 14 S 1.65605 * 119.99986 * 119.99752 * 12 2 1 15 15 O 1.42104 * 106.39854 * 156.45916 * 14 12 2 16 16 O 1.42104 * 106.40258 * 23.54011 * 14 12 2 17 17 N 1.65600 * 107.21566 * 269.99767 * 14 12 2 18 18 C 1.47042 * 121.35706 * 269.92255 * 17 14 12 19 19 C 1.50435 * 108.91985 * 222.73701 * 18 17 14 20 20 O 1.21288 * 118.48891 * 167.30178 * 19 18 17 21 21 N 1.33371 * 123.02508 * 347.32307 * 19 18 17 22 22 C 1.45657 * 124.59004 * 4.31948 * 21 19 18 23 23 H 1.08992 * 109.21505 * 98.43393 * 22 21 19 24 24 C 1.53000 * 109.18236 * 217.79347 * 22 21 19 25 25 C 1.47274 * 121.34962 * 90.00337 * 17 14 12 26 26 H 1.08996 * 109.47402 * 300.00219 * 1 2 3 27 27 H 1.08996 * 109.47134 * 60.00517 * 1 2 3 28 28 H 1.09006 * 109.46219 * 180.02562 * 1 2 3 29 29 H 0.97006 * 119.99471 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47109 * 269.99775 * 13 12 2 31 31 H 1.08997 * 109.47244 * 29.99891 * 13 12 2 32 32 H 1.09003 * 109.46898 * 150.00198 * 13 12 2 33 33 H 1.09000 * 109.52759 * 102.91517 * 18 17 14 34 34 H 1.08999 * 109.57568 * 342.58474 * 18 17 14 35 35 H 0.96995 * 117.71099 * 184.29834 * 21 19 18 36 36 H 1.08999 * 109.47098 * 181.26179 * 24 22 21 37 37 H 1.09006 * 109.46980 * 301.26065 * 24 22 21 38 38 H 1.08996 * 109.47363 * 61.25284 * 24 22 21 39 39 H 1.09002 * 109.72214 * 358.79855 * 25 17 14 40 40 H 1.09004 * 109.71782 * 238.18764 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3214 -1.1200 4.0081 9 1 3.1465 -2.2866 3.6040 10 1 3.1466 -0.1869 4.8165 11 1 1.1660 -1.5863 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4278 14 16 2.9705 0.1142 -2.2862 15 8 3.7120 -0.8790 -2.9814 16 8 3.5794 1.1830 -1.5749 17 7 1.9607 0.8088 -3.3999 18 6 1.5621 0.0946 -4.6218 19 6 1.6198 1.0474 -5.7845 20 8 1.5538 0.5942 -6.9076 21 7 1.7408 2.3674 -5.6373 22 6 1.9214 3.0438 -4.3600 23 1 2.9795 3.2622 -4.2162 24 6 1.1335 4.3553 -4.3698 25 6 1.4268 2.1678 -3.2074 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 0.7089 1.1616 3.4843 30 1 2.4159 -2.7377 -0.9715 31 1 0.6906 -2.3003 -0.9845 32 1 1.6240 -2.2853 -2.5000 33 1 0.5456 -0.2821 -4.5085 34 1 2.2440 -0.7374 -4.7974 35 1 1.7063 2.9155 -6.4368 36 1 1.2834 4.8763 -3.4242 37 1 1.4826 4.9829 -5.1898 38 1 0.0730 4.1410 -4.5025 39 1 1.7823 2.5719 -2.2596 40 1 0.3372 2.1385 -3.2091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451880287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:40 Heat of formation + Delta-G solvation = -101.660880 kcal Electronic energy + Delta-G solvation = -24929.918423 eV Core-core repulsion = 21292.887010 eV Total energy + Delta-G solvation = -3637.031413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.33004 -37.25142 -36.82228 -36.24942 -35.37666 -34.54698 -32.64803 -31.37321 -29.17685 -27.95032 -25.73016 -25.55844 -25.16591 -22.65077 -20.81251 -19.87647 -18.69676 -17.77036 -17.19490 -16.93445 -16.61463 -16.22755 -15.71267 -15.46749 -14.99877 -14.47000 -14.14652 -13.67874 -13.47670 -13.33981 -12.98620 -12.80585 -12.67033 -12.41970 -12.37020 -12.04444 -11.85071 -11.73776 -11.46340 -11.42051 -11.34497 -11.25657 -11.04592 -10.86085 -10.52570 -10.34217 -10.30863 -10.08760 -9.36942 -9.31951 -9.02835 -8.51803 -8.05967 -6.13889 -4.20125 0.94106 2.47145 2.97241 3.24233 3.29516 3.32867 3.37502 3.89633 4.30247 4.35480 4.45352 4.62651 4.79322 4.95388 5.08245 5.18104 5.22691 5.30072 5.42709 5.47369 5.56663 5.67565 5.83614 5.89823 6.07676 6.19955 6.32461 6.55248 6.62136 6.68879 6.73017 6.92529 7.14076 7.36016 7.55568 7.71192 7.96574 8.03737 8.20235 8.82514 9.46219 10.91866 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023294 B = 0.004857 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.741300 B = 5763.789714 C = 6261.446865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.987 5.987 13 C 0.109 3.891 14 S 2.777 3.223 15 O -0.988 6.988 16 O -0.965 6.965 17 N -1.017 6.017 18 C 0.107 3.893 19 C 0.520 3.480 20 O -0.555 6.555 21 N -0.710 5.710 22 C 0.121 3.879 23 H 0.082 0.918 24 C -0.163 4.163 25 C 0.111 3.889 26 H 0.093 0.907 27 H 0.010 0.990 28 H 0.034 0.966 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.397 0.603 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.115 0.885 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 4.459 -11.617 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.830 5.830 13 C -0.038 4.038 14 S 2.787 3.213 15 O -0.972 6.972 16 O -0.949 6.949 17 N -0.855 5.855 18 C -0.021 4.021 19 C 0.305 3.695 20 O -0.433 6.433 21 N -0.363 5.363 22 C 0.014 3.986 23 H 0.100 0.900 24 C -0.222 4.222 25 C -0.015 4.015 26 H 0.112 0.888 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.144 0.856 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.057 4.227 -11.828 12.728 hybrid contribution -0.216 -0.178 0.695 0.749 sum -2.273 4.049 -11.134 12.063 Atomic orbital electron populations 1.22126 0.98190 0.99868 1.00602 1.18770 0.91335 0.92945 0.80537 0.92393 1.21361 1.31570 1.13039 0.89953 0.91866 1.24899 0.94911 0.94992 0.99021 1.69856 1.36598 1.22725 1.23750 0.86439 0.78632 0.79709 0.82637 1.19706 1.20874 1.20966 1.57764 1.70002 1.19861 1.35397 1.21173 1.01893 0.81891 0.98828 1.02180 0.73689 0.73201 0.72238 1.93546 1.68850 1.60173 1.74604 1.93602 1.73529 1.55915 1.71836 1.58823 1.67739 1.24654 1.34268 1.21550 1.04137 0.94923 0.81501 1.20306 0.75119 0.83338 0.90707 1.90777 1.51075 1.76213 1.25261 1.45516 1.73556 1.07022 1.10177 1.21386 1.00972 0.92703 0.83493 0.89989 1.22137 1.00715 0.95687 1.03622 1.21821 0.99971 0.80660 0.99051 0.88813 0.97068 0.94684 0.92719 0.93079 0.90819 0.93300 0.87905 0.85596 0.76696 0.90061 0.91695 0.91529 0.86717 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.95 37.16 0.33 -2.79 16 2 C 0.27 6.12 2.62 -69.08 -0.18 5.94 16 3 H 0.06 1.45 6.91 -51.93 -0.36 1.09 16 4 C -0.52 -13.45 8.37 -34.44 -0.29 -13.74 16 5 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.73 11.32 55.43 0.63 -23.10 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.99 -19.29 3.12 -115.85 -0.36 -19.65 16 13 C 0.11 1.83 9.53 59.84 0.57 2.40 16 14 S 2.78 51.45 6.12 -107.50 -0.66 50.79 16 15 O -0.99 -19.70 15.87 -57.17 -0.91 -20.60 16 16 O -0.97 -20.73 15.43 -57.17 -0.88 -21.61 16 17 N -1.02 -14.40 3.36 -114.81 -0.39 -14.79 16 18 C 0.11 1.38 6.65 -5.03 -0.03 1.35 16 19 C 0.52 7.00 7.84 -11.74 -0.09 6.91 16 20 O -0.56 -9.18 17.80 5.55 0.10 -9.08 16 21 N -0.71 -7.62 5.12 -54.78 -0.28 -7.90 16 22 C 0.12 1.19 3.85 -68.39 -0.26 0.92 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 24 C -0.16 -1.13 9.33 37.16 0.35 -0.78 16 25 C 0.11 1.32 5.82 -3.63 -0.02 1.30 16 26 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 29 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 32 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.13 1.68 6.98 -51.93 -0.36 1.32 16 35 H 0.40 3.61 8.61 -40.82 -0.35 3.26 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.11 1.47 7.11 -51.93 -0.37 1.10 16 40 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -32.43 334.87 -8.21 -40.64 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.76 Total: 1.66 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 0.28 Total: 3.09 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -0.40 Total: -65.44 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -1.69 Total: -51.30 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 51.45 SS G_CDS: -0.66 Total: 50.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.43 -8.21 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451880287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.026 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds