Wall clock time and date at job start Fri Apr 10 2020 14:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46870 * 2 1 4 4 C 1.53003 * 109.46880 * 120.00067 * 2 1 3 5 5 C 1.53000 * 117.49792 * 299.99770 * 4 2 1 6 6 C 1.53002 * 60.02940 * 107.48056 * 5 4 2 7 7 N 1.46500 * 109.46736 * 239.99904 * 2 1 3 8 8 C 1.46495 * 120.00031 * 300.00002 * 7 2 1 9 9 S 1.65598 * 119.99605 * 120.00271 * 7 2 1 10 10 O 1.42099 * 106.40396 * 203.53524 * 9 7 2 11 11 O 1.42101 * 106.40597 * 336.45756 * 9 7 2 12 12 N 1.65598 * 107.21836 * 89.99637 * 9 7 2 13 13 C 1.46497 * 119.99997 * 65.00121 * 12 9 7 14 14 C 1.50704 * 109.47357 * 164.99973 * 13 12 9 15 15 O 1.21291 * 119.99844 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00080 * 179.97438 * 14 13 12 17 17 C 1.37093 * 119.99836 * 179.97438 * 16 14 13 18 18 H 1.07992 * 120.00539 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99850 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99998 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46875 * 60.00479 * 21 19 17 23 23 H 1.48500 * 109.47142 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47251 * 300.00361 * 21 19 17 25 25 H 1.08991 * 109.47180 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46847 * 300.00271 * 1 2 3 27 27 H 1.09000 * 109.46860 * 59.99734 * 1 2 3 28 28 H 1.08999 * 115.55832 * 154.31387 * 4 2 1 29 29 H 1.09002 * 117.49833 * 214.98161 * 5 4 2 30 30 H 1.09002 * 117.49953 * 359.97438 * 5 4 2 31 31 H 1.09000 * 117.49996 * 107.50493 * 6 5 4 32 32 H 1.08999 * 117.49664 * 252.51862 * 6 5 4 33 33 H 1.09002 * 109.47059 * 90.00690 * 8 7 2 34 34 H 1.09007 * 109.46802 * 210.00063 * 8 7 2 35 35 H 1.09000 * 109.47481 * 329.99747 * 8 7 2 36 36 H 0.97002 * 120.00225 * 244.99943 * 12 9 7 37 37 H 1.09007 * 109.47120 * 284.99718 * 13 12 9 38 38 H 1.09005 * 109.47515 * 44.99784 * 13 12 9 39 39 H 0.97006 * 119.99628 * 0.02562 * 16 14 13 40 40 H 0.97001 * 120.00289 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6357 -0.1495 2.6096 6 6 1.0098 -1.4540 2.1122 7 7 2.0183 -0.6906 -1.1962 8 6 1.6644 -2.0932 -1.4280 9 16 2.9704 0.1142 -2.2862 10 8 2.8228 -0.5645 -3.5259 11 8 2.6904 1.4973 -2.1193 12 7 4.5437 -0.1042 -1.8180 13 6 5.1357 -1.4441 -1.8415 14 6 6.6349 -1.3329 -1.7351 15 8 7.1574 -0.2417 -1.6486 16 7 7.3949 -2.4459 -1.7361 17 6 8.7587 -2.3446 -1.6398 18 1 9.2240 -1.3732 -1.5628 19 6 9.5423 -3.4921 -1.6402 20 7 8.9761 -4.6744 -1.7334 21 14 11.4006 -3.3542 -1.5098 22 1 11.7585 -2.6760 -0.2381 23 1 12.0005 -4.7125 -1.5315 24 1 11.9200 -2.5647 -2.6552 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.0322 -1.1644 1.1643 29 1 2.3620 -0.2165 3.4197 30 1 1.0068 0.7408 2.6146 31 1 1.3241 -2.3793 2.5951 32 1 -0.0309 -1.4219 1.7897 33 1 0.7375 -2.1443 -1.9994 34 1 2.4629 -2.5819 -1.9864 35 1 1.5295 -2.5969 -0.4708 36 1 5.0733 0.6550 -1.5281 37 1 4.7540 -2.0248 -1.0017 38 1 4.8736 -1.9408 -2.7757 39 1 6.9770 -3.3185 -1.8056 40 1 9.5231 -5.4755 -1.7334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552123052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:27 Heat of formation + Delta-G solvation = -86.589188 kcal Electronic energy + Delta-G solvation = -23823.207999 eV Core-core repulsion = 20186.830144 eV Total energy + Delta-G solvation = -3636.377855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.00602 -38.44373 -37.16821 -35.76494 -35.31947 -34.63297 -33.69391 -31.36669 -30.32504 -27.18944 -26.70386 -24.33903 -24.28678 -22.57345 -20.16844 -19.63031 -19.01537 -18.14996 -17.96699 -17.41767 -16.71640 -15.98506 -15.55099 -15.16462 -14.95272 -14.62784 -14.36564 -14.20878 -13.78616 -13.63847 -13.35917 -12.71269 -12.55910 -12.40923 -12.31467 -12.19840 -11.97670 -11.90863 -11.84355 -11.64004 -11.58601 -11.53635 -11.19674 -11.11816 -10.56438 -10.50985 -10.31051 -10.17199 -9.63465 -9.39992 -9.23101 -8.60379 -8.10308 -6.52184 -3.93848 0.64846 2.86901 3.13627 3.21183 3.25417 3.58080 3.62814 3.73803 4.09155 4.35412 4.48911 4.50800 4.73076 4.81703 4.83765 5.00961 5.05319 5.14736 5.20094 5.38353 5.43389 5.46013 5.49244 5.60121 5.65867 5.69227 5.76434 5.81152 5.90996 5.92825 6.02770 6.06012 6.27441 6.47736 7.29654 7.45696 7.92852 8.45766 9.04970 9.38772 9.87735 10.64775 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.003702 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.294220 B = 7562.461924 C = 8198.652721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 H 0.103 0.897 4 C -0.166 4.166 5 C -0.174 4.174 6 C -0.182 4.182 7 N -1.003 6.003 8 C 0.092 3.908 9 S 2.790 3.210 10 O -0.977 6.977 11 O -0.980 6.980 12 N -1.107 6.107 13 C 0.110 3.890 14 C 0.434 3.566 15 O -0.589 6.589 16 N -0.552 5.552 17 C -0.305 4.305 18 H 0.104 0.896 19 C 0.026 3.974 20 N -0.897 5.897 21 Si 0.933 3.067 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.425 0.575 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.395 0.605 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.765 2.581 6.291 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.070 3.930 3 H 0.121 0.879 4 C -0.186 4.186 5 C -0.212 4.212 6 C -0.219 4.219 7 N -0.842 5.842 8 C -0.053 4.053 9 S 2.798 3.202 10 O -0.960 6.960 11 O -0.964 6.964 12 N -0.873 5.873 13 C -0.021 4.021 14 C 0.218 3.782 15 O -0.475 6.475 16 N -0.188 5.188 17 C -0.434 4.434 18 H 0.122 0.878 19 C -0.176 4.176 20 N -0.537 5.537 21 Si 0.760 3.240 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.228 0.772 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.721 3.419 5.496 18.866 hybrid contribution 1.116 -0.630 0.543 1.392 sum -16.605 2.789 6.039 17.888 Atomic orbital electron populations 1.22217 0.94757 1.02609 1.02382 1.20365 0.94603 0.95789 0.82286 0.87870 1.22760 1.00261 1.04275 0.91304 1.22954 1.03790 0.97553 0.96876 1.23160 0.98794 0.96161 1.03809 1.57953 1.66023 1.22405 1.37827 1.21454 1.01263 0.80425 1.02201 1.01747 0.72308 0.72772 0.73410 1.93608 1.85917 1.75976 1.40470 1.93597 1.84109 1.32021 1.86695 1.55531 1.30482 1.15983 1.85255 1.20891 0.95282 0.83483 1.02449 1.19646 0.87481 0.85580 0.85471 1.90508 1.73476 1.26988 1.56489 1.41808 1.07131 1.07081 1.62781 1.19682 0.80930 0.94989 1.47818 0.87773 1.25296 1.00956 0.94548 0.96841 1.69596 1.36983 0.97737 1.49406 0.85881 0.81695 0.77274 0.79175 1.19822 1.20871 1.19774 0.91565 0.91445 0.92026 0.86965 0.88626 0.88646 0.88946 0.88104 0.92502 0.90967 0.90615 0.73715 0.90454 0.89074 0.77160 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 7.79 37.16 0.29 -1.00 16 2 C 0.18 1.74 3.03 -67.92 -0.21 1.54 16 3 H 0.10 1.12 6.91 -51.93 -0.36 0.76 16 4 C -0.17 -1.51 4.97 -90.58 -0.45 -1.96 16 5 C -0.17 -1.38 9.90 -26.73 -0.26 -1.64 16 6 C -0.18 -1.36 9.50 -26.69 -0.25 -1.61 16 7 N -1.00 -11.13 3.13 -114.60 -0.36 -11.49 16 8 C 0.09 0.85 9.35 59.84 0.56 1.41 16 9 S 2.79 41.04 6.09 -107.50 -0.66 40.39 16 10 O -0.98 -16.87 16.68 -57.17 -0.95 -17.82 16 11 O -0.98 -16.45 16.70 -57.17 -0.95 -17.40 16 12 N -1.11 -17.65 5.99 -11.65 -0.07 -17.72 16 13 C 0.11 1.83 6.73 -5.19 -0.03 1.79 16 14 C 0.43 9.80 7.85 -10.98 -0.09 9.72 16 15 O -0.59 -15.30 15.30 5.55 0.08 -15.22 16 16 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 17 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 20 N -0.90 -23.50 13.05 55.50 0.72 -22.77 16 21 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H 0.07 0.47 6.50 -51.93 -0.34 0.13 16 26 H 0.07 0.45 7.07 -51.93 -0.37 0.08 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.67 7.61 -51.93 -0.40 0.28 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.66 5.85 -51.93 -0.30 0.35 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.68 7.79 -51.92 -0.40 0.27 16 35 H 0.08 0.57 7.21 -51.93 -0.37 0.20 16 36 H 0.42 7.20 7.70 -34.47 -0.27 6.93 16 37 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 38 H 0.09 1.43 7.75 -51.93 -0.40 1.03 16 39 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 40 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -32.98 344.01 -8.35 -41.33 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -5.58 Total: 13.09 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.69 Total: 0.47 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: 0.24 Total: -65.44 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -1.82 Total: -50.44 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 41.04 SS G_CDS: -0.66 Total: 40.39 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.98 -8.35 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552123052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.259 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds