Wall clock time and date at job start Fri Apr 10 2020 14:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47411 * 2 1 4 4 C 1.50700 * 109.46917 * 119.99785 * 2 1 3 5 5 H 1.07998 * 119.99911 * 120.00100 * 4 2 1 6 6 C 1.37875 * 120.00246 * 299.99953 * 4 2 1 7 7 N 1.31511 * 119.99871 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00097 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47134 * 90.00058 * 8 6 4 10 10 H 1.48495 * 109.47203 * 210.00226 * 8 6 4 11 11 H 1.48504 * 109.46743 * 329.99888 * 8 6 4 12 12 N 1.46500 * 109.47088 * 240.00119 * 2 1 3 13 13 C 1.34773 * 120.00260 * 84.99974 * 12 2 1 14 14 O 1.21281 * 120.00053 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99967 * 179.97438 * 13 12 2 16 16 H 1.08994 * 109.49719 * 59.93433 * 15 13 12 17 17 C 1.53041 * 109.49834 * 299.83849 * 15 13 12 18 18 C 1.53033 * 109.53898 * 178.68474 * 17 15 13 19 19 C 1.53192 * 109.31270 * 61.36218 * 18 17 15 20 20 N 1.46926 * 108.77820 * 305.36633 * 19 18 17 21 21 S 1.65604 * 120.63097 * 233.58449 * 20 19 18 22 22 N 1.65600 * 107.21665 * 89.99902 * 21 20 19 23 23 O 1.42095 * 106.40049 * 203.54103 * 21 20 19 24 24 O 1.42105 * 106.40129 * 336.46138 * 21 20 19 25 25 C 1.46927 * 118.73580 * 53.60911 * 20 19 18 26 26 H 1.09007 * 109.46933 * 59.99916 * 1 2 3 27 27 H 1.08999 * 109.47411 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46952 * 300.00194 * 1 2 3 29 29 H 0.97003 * 119.99990 * 180.02562 * 7 6 4 30 30 H 0.97004 * 119.99753 * 264.99953 * 12 2 1 31 31 H 1.09002 * 109.46121 * 298.70253 * 17 15 13 32 32 H 1.09004 * 109.46035 * 58.67240 * 17 15 13 33 33 H 1.09000 * 109.49457 * 301.41562 * 18 17 15 34 34 H 1.08995 * 109.50116 * 181.31732 * 18 17 15 35 35 H 1.09006 * 109.58809 * 185.57967 * 19 18 17 36 36 H 1.09002 * 109.58657 * 65.15954 * 19 18 17 37 37 H 0.96992 * 119.99737 * 149.99528 * 22 21 20 38 38 H 0.97001 * 120.00003 * 330.00633 * 22 21 20 39 39 H 1.08997 * 109.58859 * 66.17990 * 25 20 19 40 40 H 1.09000 * 109.58547 * 186.60408 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4879 -2.5653 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4118 15 6 2.6499 -0.7286 -3.5875 16 1 1.9787 -1.5517 -3.8322 17 6 4.0547 -1.2755 -3.3232 18 6 4.5531 -2.0252 -4.5607 19 6 4.6263 -1.0561 -5.7449 20 7 3.3144 -0.4167 -5.9146 21 16 2.5415 -0.4521 -7.3787 22 7 1.6009 -1.8148 -7.4036 23 8 1.6479 0.6526 -7.3875 24 8 3.5508 -0.6432 -8.3607 25 6 2.7016 0.2552 -4.7606 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7095 1.1619 3.4844 30 1 2.2490 -1.6318 -1.1526 31 1 4.7305 -0.4492 -3.1026 32 1 4.0250 -1.9572 -2.4732 33 1 3.8643 -2.8364 -4.7966 34 1 5.5440 -2.4343 -4.3637 35 1 4.8853 -1.6047 -6.6506 36 1 5.3812 -0.2949 -5.5480 37 1 0.7783 -1.8268 -7.9173 38 1 1.8726 -2.6008 -6.9044 39 1 3.2994 1.1234 -4.4833 40 1 1.6906 0.5719 -5.0167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590434930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:37 Heat of formation + Delta-G solvation = -157.713969 kcal Electronic energy + Delta-G solvation = -23951.958496 eV Core-core repulsion = 20312.496439 eV Total energy + Delta-G solvation = -3639.462057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.06560 -38.87510 -38.33996 -36.96945 -36.67905 -34.45592 -34.01127 -33.53306 -32.29132 -30.57064 -27.32718 -25.63824 -25.33729 -22.91224 -21.87539 -20.92958 -20.21998 -19.39526 -18.73555 -18.38015 -17.56229 -17.42175 -17.12568 -16.57736 -16.15589 -16.06373 -15.45888 -15.18623 -14.98996 -14.65747 -14.49552 -14.25725 -13.80696 -13.61199 -13.28838 -13.25309 -13.15604 -13.03352 -12.93185 -12.86639 -12.73293 -12.47160 -12.24550 -12.10484 -11.98771 -11.88633 -11.53028 -11.27750 -11.08556 -10.65613 -10.52044 -10.12262 -9.70927 -8.15660 -6.33189 -0.45026 1.46825 1.46970 1.57633 1.83943 1.84940 2.37746 2.60065 2.66964 3.15208 3.44885 3.54924 3.80644 3.90599 4.01590 4.19067 4.29221 4.42257 4.55770 4.77893 4.79946 4.85984 4.94228 5.00611 5.06661 5.12310 5.14833 5.18865 5.31745 5.44343 5.45939 5.54516 5.64090 5.71650 5.92922 6.12389 6.38615 6.75524 6.99519 7.34947 7.59957 8.90584 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.031025 B = 0.003290 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.268830 B = 8509.504976 C = 8990.597851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.257 1.257 12 N -0.700 5.700 13 C 0.501 3.499 14 O -0.603 6.603 15 C -0.109 4.109 16 H 0.129 0.871 17 C -0.109 4.109 18 C -0.123 4.123 19 C 0.106 3.894 20 N -0.996 5.996 21 S 2.815 3.185 22 N -1.244 6.244 23 O -1.020 7.020 24 O -1.007 7.007 25 C 0.147 3.853 26 H 0.011 0.989 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.264 0.736 30 H 0.406 0.594 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.427 0.573 38 H 0.428 0.572 39 H 0.065 0.935 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.167 -12.787 -17.203 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.181 1.181 12 N -0.349 5.349 13 C 0.288 3.712 14 O -0.485 6.485 15 C -0.132 4.132 16 H 0.146 0.854 17 C -0.147 4.147 18 C -0.161 4.161 19 C -0.018 4.018 20 N -0.837 5.837 21 S 2.820 3.180 22 N -0.923 5.923 23 O -1.004 7.004 24 O -0.989 6.989 25 C 0.021 3.979 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.242 0.758 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.258 0.742 38 H 0.258 0.742 39 H 0.084 0.916 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.084 -11.026 -17.830 21.829 hybrid contribution -0.301 -0.537 1.452 1.577 sum 5.782 -11.563 -16.378 20.866 Atomic orbital electron populations 1.21902 0.98465 0.99487 0.99457 1.18327 0.91018 0.91931 0.82204 0.98580 1.21552 1.32412 1.13539 0.90670 0.90556 1.25808 0.94893 0.95581 1.02402 1.70063 1.37125 1.24058 1.24528 0.85352 0.77649 0.79328 0.78038 1.20485 1.21279 1.18082 1.46226 1.64881 1.14219 1.09532 1.21230 0.77294 0.86975 0.85731 1.90665 1.53229 1.18612 1.85978 1.21669 1.00840 0.99540 0.91131 0.85360 1.21526 0.92613 1.00535 1.00055 1.21939 1.04063 0.97661 0.92474 1.21816 0.82584 0.96604 1.00839 1.57704 1.30260 1.68984 1.26766 1.00772 0.72314 0.72924 0.71945 1.53181 1.40626 1.32029 1.66454 1.93595 1.66595 1.53445 1.86740 1.93602 1.60469 1.86679 1.58186 1.20986 0.98841 0.93869 0.84243 0.97007 0.93910 0.91744 0.92661 0.75833 0.92486 0.89797 0.88915 0.87892 0.87374 0.90701 0.74157 0.74212 0.91635 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 9.26 71.98 0.67 -6.01 16 2 C 0.27 13.52 2.56 44.24 0.11 13.64 16 3 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 4 C -0.54 -27.72 8.73 25.60 0.22 -27.50 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.54 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -52.20 11.32 21.45 0.24 -51.96 16 8 Si 0.97 40.85 29.54 68.60 2.03 42.87 16 9 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 12 N -0.70 -26.81 4.96 -446.10 -2.21 -29.02 16 13 C 0.50 18.40 7.12 87.66 0.62 19.03 16 14 O -0.60 -28.56 15.58 -3.03 -0.05 -28.61 16 15 C -0.11 -2.53 2.68 -11.46 -0.03 -2.56 16 16 H 0.13 2.16 8.14 -2.39 -0.02 2.15 16 17 C -0.11 -1.92 5.08 30.62 0.16 -1.77 16 18 C -0.12 -1.23 6.08 30.67 0.19 -1.04 16 19 C 0.11 1.40 6.38 86.36 0.55 1.95 16 20 N -1.00 -18.17 3.35 -513.06 -1.72 -19.89 16 21 S 2.82 55.51 6.70 -56.49 -0.38 55.14 16 22 N -1.24 -13.05 9.58 37.02 0.35 -12.69 16 23 O -1.02 -29.55 16.85 -128.00 -2.16 -31.71 16 24 O -1.01 -24.56 16.85 -128.00 -2.16 -26.72 16 25 C 0.15 3.67 5.01 86.36 0.43 4.11 16 26 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 3.54 6.07 -2.38 -0.01 3.53 16 29 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.41 12.52 7.95 -92.71 -0.74 11.78 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.37 7.54 -2.38 -0.02 1.35 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 1.12 7.13 -2.38 -0.02 1.10 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.43 3.49 8.96 -96.76 -0.87 2.62 16 38 H 0.43 2.08 8.96 -96.74 -0.87 1.21 16 39 H 0.07 1.90 7.95 -2.39 -0.02 1.88 16 40 H 0.08 2.34 7.13 -2.39 -0.02 2.32 16 Total: -1.00 -78.64 336.56 -4.06 -82.69 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -1.38 Total: 18.92 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 3.37 Total: 0.98 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -3.33 Total: -113.56 kcal Atomic # 8 Polarization: -82.68 SS G_CDS: -4.36 Total: -87.04 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Atomic # 16 Polarization: 55.51 SS G_CDS: -0.38 Total: 55.14 kcal Total: -78.64 -4.06 -82.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.020 kcal (2) G-P(sol) polarization free energy of solvation -78.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds