Wall clock time and date at job start Fri Apr 10 2020 14:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47018 * 2 1 4 4 C 1.50702 * 109.47015 * 119.99609 * 2 1 3 5 5 H 1.08002 * 119.99791 * 120.00009 * 4 2 1 6 6 C 1.37878 * 120.00113 * 299.99793 * 4 2 1 7 7 N 1.31517 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00245 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47240 * 59.99477 * 8 6 4 10 10 H 1.48491 * 109.47604 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46990 * 300.00118 * 8 6 4 12 12 N 1.46501 * 109.46894 * 239.99269 * 2 1 3 13 13 C 1.34782 * 119.99445 * 85.00302 * 12 2 1 14 14 O 1.21277 * 120.00007 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99508 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.52608 * 299.92113 * 15 13 12 17 17 C 1.53046 * 109.49623 * 59.99926 * 15 13 12 18 18 C 1.53046 * 109.53579 * 181.31259 * 17 15 13 19 19 C 1.53187 * 109.31363 * 298.63645 * 18 17 15 20 20 N 1.46928 * 108.77625 * 54.63376 * 19 18 17 21 21 S 1.65603 * 120.62842 * 126.41343 * 20 19 18 22 22 N 1.65604 * 107.21786 * 269.97698 * 21 20 19 23 23 O 1.42092 * 106.40531 * 23.51824 * 21 20 19 24 24 O 1.42103 * 106.40154 * 156.44107 * 21 20 19 25 25 C 1.46921 * 118.73936 * 306.39044 * 20 19 18 26 26 H 1.09005 * 109.46658 * 300.00555 * 1 2 3 27 27 H 1.08990 * 109.47242 * 60.00078 * 1 2 3 28 28 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00299 * 179.97438 * 7 6 4 30 30 H 0.96989 * 120.00178 * 265.00051 * 12 2 1 31 31 H 1.08993 * 109.45866 * 301.33434 * 17 15 13 32 32 H 1.09000 * 109.45949 * 61.29770 * 17 15 13 33 33 H 1.09001 * 109.49519 * 58.58791 * 18 17 15 34 34 H 1.08996 * 109.49601 * 178.68448 * 18 17 15 35 35 H 1.09000 * 109.59097 * 294.84726 * 19 18 17 36 36 H 1.09002 * 109.70548 * 174.49212 * 19 18 17 37 37 H 0.97000 * 119.99885 * 150.00250 * 22 21 20 38 38 H 0.97000 * 119.99748 * 329.99892 * 22 21 20 39 39 H 1.08996 * 109.58905 * 293.82203 * 25 20 19 40 40 H 1.09001 * 109.70481 * 173.46556 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9437 0.8304 2.6034 8 14 2.3225 -1.1192 4.0081 9 1 3.8075 -1.1188 4.0078 10 1 1.8270 -0.4196 5.2205 11 1 1.8280 -2.5195 4.0084 12 7 2.0183 -0.6908 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1582 -2.4117 15 6 2.6499 -0.7288 -3.5874 16 1 3.6497 -1.1198 -3.3992 17 6 1.7064 -1.8836 -3.9319 18 6 2.2339 -2.6259 -5.1619 19 6 2.2770 -1.6647 -6.3539 20 7 3.0640 -0.4819 -5.9794 21 16 4.3395 0.0128 -6.9125 22 7 5.6911 -0.7560 -6.3427 23 8 4.1057 -0.5006 -8.2166 24 8 4.5212 1.3962 -6.6429 25 6 2.6976 0.2539 -4.7616 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7090 1.1617 3.4844 30 1 2.2490 -1.6318 -1.1525 31 1 1.6515 -2.5716 -3.0883 32 1 0.7125 -1.4895 -4.1442 33 1 3.2377 -2.9990 -4.9589 34 1 1.5742 -3.4623 -5.3927 35 1 1.2633 -1.3612 -6.6155 36 1 2.7423 -2.1581 -7.2073 37 1 6.4197 -0.9677 -6.9470 38 1 5.7541 -0.9946 -5.4046 39 1 1.7183 0.7138 -4.8933 40 1 3.4401 1.0264 -4.5616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590434934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:41 Heat of formation + Delta-G solvation = -127.729779 kcal Electronic energy + Delta-G solvation = -23954.651638 eV Core-core repulsion = 20316.489793 eV Total energy + Delta-G solvation = -3638.161845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -39.77047 -37.74776 -37.36005 -35.98644 -34.85616 -33.36993 -33.02377 -32.16975 -31.37735 -28.79525 -25.30362 -24.81026 -24.20521 -21.58578 -20.66466 -19.48717 -19.27873 -18.48447 -17.70409 -17.10413 -16.64803 -16.11013 -15.61404 -15.31152 -14.84529 -14.76600 -14.48183 -14.13661 -13.89085 -13.48855 -13.03024 -12.82985 -12.45536 -12.40844 -12.24555 -12.19978 -12.06787 -11.69214 -11.60391 -11.21899 -11.13952 -11.10119 -10.98661 -10.81712 -10.73859 -10.57491 -10.36123 -10.26949 -9.39997 -9.10279 -8.96542 -8.58385 -7.96481 -6.15705 -4.25533 0.40249 2.67809 3.22225 3.27532 3.28511 3.29702 3.38265 3.94478 4.29622 4.38553 4.43995 4.67577 4.73939 4.89350 4.98061 5.15244 5.17094 5.28422 5.50474 5.56318 5.66917 5.67861 5.74490 5.86927 5.93990 6.06648 6.15858 6.30853 6.78684 6.82606 6.92421 7.11163 7.41131 7.50822 7.64913 7.87260 8.11458 8.60528 8.73214 9.06060 9.42145 10.90141 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027972 B = 0.003248 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.765666 B = 8619.233521 C = 8704.270021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.506 3.494 14 O -0.552 6.552 15 C -0.125 4.125 16 H 0.094 0.906 17 C -0.109 4.109 18 C -0.133 4.133 19 C 0.119 3.881 20 N -1.002 6.002 21 S 2.794 3.206 22 N -1.262 6.262 23 O -0.985 6.985 24 O -0.976 6.976 25 C 0.138 3.862 26 H 0.090 0.910 27 H 0.014 0.986 28 H 0.026 0.974 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.417 0.583 38 H 0.415 0.585 39 H 0.087 0.913 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.632 -9.204 -16.507 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.353 5.353 13 C 0.290 3.710 14 O -0.431 6.431 15 C -0.148 4.148 16 H 0.112 0.888 17 C -0.147 4.147 18 C -0.172 4.172 19 C -0.006 4.006 20 N -0.843 5.843 21 S 2.800 3.200 22 N -0.935 5.935 23 O -0.969 6.969 24 O -0.958 6.958 25 C 0.013 3.987 26 H 0.108 0.892 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.246 0.754 38 H 0.242 0.758 39 H 0.105 0.895 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.122 -7.478 -17.201 19.443 hybrid contribution 0.794 -1.474 1.507 2.253 sum 5.916 -8.952 -15.693 19.011 Atomic orbital electron populations 1.22069 0.98445 0.99049 1.00918 1.18753 0.91042 0.94015 0.79990 0.93327 1.21166 1.32623 1.13258 0.90355 0.92183 1.24887 0.94788 0.94932 0.99063 1.69890 1.35716 1.22344 1.24046 0.86507 0.79152 0.79557 0.81845 1.20190 1.21120 1.20188 1.46524 1.64809 1.13484 1.10489 1.20184 0.78925 0.87376 0.84542 1.90685 1.51258 1.16031 1.85141 1.21720 1.01330 0.97356 0.94429 0.88759 1.21476 0.98951 0.96144 0.98152 1.21936 1.02206 0.97968 0.95045 1.21489 0.97020 0.84840 0.97238 1.57901 1.46481 1.40245 1.39715 1.01643 0.72254 0.73591 0.72560 1.53634 1.37239 1.81580 1.21061 1.93608 1.84877 1.80856 1.37525 1.93664 1.85260 1.32012 1.84909 1.21278 1.04065 0.92442 0.80905 0.89186 0.96649 0.95524 0.92474 0.77958 0.90721 0.90936 0.91300 0.90244 0.90626 0.89132 0.75390 0.75800 0.89518 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.18 16 2 C 0.26 6.47 2.56 -69.08 -0.18 6.29 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.71 -13.58 4.96 -54.93 -0.27 -13.86 16 13 C 0.51 9.18 7.12 -10.98 -0.08 9.10 16 14 O -0.55 -12.44 15.59 5.56 0.09 -12.35 16 15 C -0.13 -1.53 2.68 -91.65 -0.25 -1.78 16 16 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.11 -1.08 5.08 -26.68 -0.14 -1.22 16 18 C -0.13 -0.95 6.08 -26.61 -0.16 -1.12 16 19 C 0.12 0.97 6.38 -3.71 -0.02 0.95 16 20 N -1.00 -9.95 3.35 -113.53 -0.38 -10.33 16 21 S 2.79 29.59 6.70 -107.50 -0.72 28.87 16 22 N -1.26 -8.47 9.58 60.35 0.58 -7.89 16 23 O -0.99 -12.64 16.85 -57.17 -0.96 -13.60 16 24 O -0.98 -14.40 16.86 -57.17 -0.96 -15.37 16 25 C 0.14 1.73 5.00 -3.71 -0.02 1.71 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.39 6.34 7.94 -40.82 -0.32 6.01 16 31 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.66 7.12 -51.93 -0.37 0.29 16 37 H 0.42 2.09 8.96 -34.47 -0.31 1.78 16 38 H 0.42 2.14 8.96 -34.47 -0.31 1.83 16 39 H 0.09 1.18 7.96 -51.93 -0.41 0.77 16 40 H 0.10 1.34 7.13 -51.93 -0.37 0.97 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -34.65 336.54 -8.54 -43.20 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.70 Total: 6.57 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.89 Total: -1.63 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.55 Total: -55.90 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.84 Total: -41.32 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 29.59 SS G_CDS: -0.72 Total: 28.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.65 -8.54 -43.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.535 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds