Wall clock time and date at job start Fri Apr 10 2020 14:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47018 * 2 1 4 4 C 1.50702 * 109.47015 * 119.99609 * 2 1 3 5 5 H 1.08002 * 119.99791 * 120.00009 * 4 2 1 6 6 C 1.37878 * 120.00113 * 299.99793 * 4 2 1 7 7 N 1.31517 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00245 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47240 * 59.99477 * 8 6 4 10 10 H 1.48491 * 109.47604 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46990 * 300.00118 * 8 6 4 12 12 N 1.46501 * 109.46894 * 239.99269 * 2 1 3 13 13 C 1.34782 * 119.99445 * 85.00302 * 12 2 1 14 14 O 1.21277 * 120.00007 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99508 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.52608 * 299.92113 * 15 13 12 17 17 C 1.53046 * 109.49623 * 59.99926 * 15 13 12 18 18 C 1.53046 * 109.53579 * 181.31259 * 17 15 13 19 19 C 1.53187 * 109.31363 * 298.63645 * 18 17 15 20 20 N 1.46928 * 108.77625 * 54.63376 * 19 18 17 21 21 S 1.65603 * 120.62842 * 126.41343 * 20 19 18 22 22 N 1.65604 * 107.21786 * 269.97698 * 21 20 19 23 23 O 1.42092 * 106.40531 * 23.51824 * 21 20 19 24 24 O 1.42103 * 106.40154 * 156.44107 * 21 20 19 25 25 C 1.46921 * 118.73936 * 306.39044 * 20 19 18 26 26 H 1.09005 * 109.46658 * 300.00555 * 1 2 3 27 27 H 1.08990 * 109.47242 * 60.00078 * 1 2 3 28 28 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00299 * 179.97438 * 7 6 4 30 30 H 0.96989 * 120.00178 * 265.00051 * 12 2 1 31 31 H 1.08993 * 109.45866 * 301.33434 * 17 15 13 32 32 H 1.09000 * 109.45949 * 61.29770 * 17 15 13 33 33 H 1.09001 * 109.49519 * 58.58791 * 18 17 15 34 34 H 1.08996 * 109.49601 * 178.68448 * 18 17 15 35 35 H 1.09000 * 109.59097 * 294.84726 * 19 18 17 36 36 H 1.09002 * 109.70548 * 174.49212 * 19 18 17 37 37 H 0.97000 * 119.99885 * 150.00250 * 22 21 20 38 38 H 0.97000 * 119.99748 * 329.99892 * 22 21 20 39 39 H 1.08996 * 109.58905 * 293.82203 * 25 20 19 40 40 H 1.09001 * 109.70481 * 173.46556 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9437 0.8304 2.6034 8 14 2.3225 -1.1192 4.0081 9 1 3.8075 -1.1188 4.0078 10 1 1.8270 -0.4196 5.2205 11 1 1.8280 -2.5195 4.0084 12 7 2.0183 -0.6908 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1582 -2.4117 15 6 2.6499 -0.7288 -3.5874 16 1 3.6497 -1.1198 -3.3992 17 6 1.7064 -1.8836 -3.9319 18 6 2.2339 -2.6259 -5.1619 19 6 2.2770 -1.6647 -6.3539 20 7 3.0640 -0.4819 -5.9794 21 16 4.3395 0.0128 -6.9125 22 7 5.6911 -0.7560 -6.3427 23 8 4.1057 -0.5006 -8.2166 24 8 4.5212 1.3962 -6.6429 25 6 2.6976 0.2539 -4.7616 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7090 1.1617 3.4844 30 1 2.2490 -1.6318 -1.1525 31 1 1.6515 -2.5716 -3.0883 32 1 0.7125 -1.4895 -4.1442 33 1 3.2377 -2.9990 -4.9589 34 1 1.5742 -3.4623 -5.3927 35 1 1.2633 -1.3612 -6.6155 36 1 2.7423 -2.1581 -7.2073 37 1 6.4197 -0.9677 -6.9470 38 1 5.7541 -0.9946 -5.4046 39 1 1.7183 0.7138 -4.8933 40 1 3.4401 1.0264 -4.5616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590434934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:40 Heat of formation + Delta-G solvation = -157.500604 kcal Electronic energy + Delta-G solvation = -23955.942598 eV Core-core repulsion = 20316.489793 eV Total energy + Delta-G solvation = -3639.452805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06738 -38.86872 -38.34138 -36.97101 -36.67630 -34.45493 -34.01093 -33.52598 -32.29343 -30.57166 -27.32082 -25.63404 -25.33781 -22.88318 -21.92974 -20.90198 -20.22232 -19.38644 -18.72113 -18.39567 -17.64771 -17.26048 -17.15627 -16.68886 -16.07039 -16.01015 -15.52465 -15.25035 -14.97622 -14.66481 -14.38949 -14.22614 -13.88884 -13.60232 -13.29615 -13.24335 -13.17080 -13.01403 -12.95775 -12.82476 -12.72971 -12.45020 -12.24628 -12.14415 -11.98930 -11.87413 -11.53447 -11.28314 -11.08984 -10.64945 -10.51785 -10.11547 -9.70846 -8.15327 -6.32984 -0.45156 1.46917 1.48596 1.56434 1.84348 1.85447 2.37675 2.59582 2.66566 3.15288 3.44762 3.53235 3.79725 3.90845 4.03550 4.19294 4.29538 4.42126 4.55572 4.78518 4.80481 4.86441 4.94665 4.99622 5.06287 5.12681 5.14714 5.19068 5.32352 5.44442 5.46258 5.53281 5.64117 5.72011 5.93390 6.12748 6.37104 6.75509 6.99927 7.35147 7.60343 8.90631 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027972 B = 0.003248 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.765666 B = 8619.233521 C = 8704.270021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.290 1.290 11 H -0.263 1.263 12 N -0.700 5.700 13 C 0.501 3.499 14 O -0.602 6.602 15 C -0.110 4.110 16 H 0.128 0.872 17 C -0.108 4.108 18 C -0.122 4.122 19 C 0.110 3.890 20 N -0.996 5.996 21 S 2.815 3.185 22 N -1.244 6.244 23 O -1.006 7.006 24 O -1.022 7.022 25 C 0.143 3.857 26 H 0.063 0.937 27 H 0.011 0.989 28 H 0.042 0.958 29 H 0.264 0.736 30 H 0.406 0.594 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.428 0.572 38 H 0.426 0.574 39 H 0.067 0.933 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.896 -12.551 -16.981 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.349 5.349 13 C 0.288 3.712 14 O -0.484 6.484 15 C -0.133 4.133 16 H 0.146 0.854 17 C -0.146 4.146 18 C -0.161 4.161 19 C -0.014 4.014 20 N -0.837 5.837 21 S 2.820 3.180 22 N -0.923 5.923 23 O -0.989 6.989 24 O -1.004 7.004 25 C 0.017 3.983 26 H 0.082 0.918 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.242 0.758 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.260 0.740 38 H 0.256 0.744 39 H 0.085 0.915 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.409 -10.885 -17.711 21.754 hybrid contribution 0.398 -0.401 1.603 1.700 sum 6.807 -11.286 -16.108 20.812 Atomic orbital electron populations 1.21882 0.98405 0.99447 0.99399 1.18324 0.91058 0.91912 0.82175 0.98581 1.21529 1.32531 1.13568 0.90715 0.90594 1.25806 0.94903 0.95554 1.02391 1.70056 1.37086 1.23993 1.24597 0.85406 0.78653 0.78733 0.77581 1.19534 1.21541 1.18738 1.46225 1.64916 1.14212 1.09503 1.21214 0.77481 0.86887 0.85616 1.90666 1.53174 1.18618 1.85988 1.21684 1.03389 0.97424 0.90807 0.85391 1.21522 0.97717 0.95310 1.00059 1.21921 1.03816 0.97704 0.92668 1.21765 0.96979 0.84274 0.98426 1.57697 1.46785 1.40735 1.38445 1.00766 0.72614 0.72662 0.71938 1.53191 1.36301 1.80827 1.21933 1.93578 1.85456 1.80938 1.38941 1.93617 1.86034 1.35345 1.85453 1.21032 1.02674 0.92530 0.82106 0.91803 0.97033 0.93938 0.92651 0.75826 0.89723 0.92251 0.89237 0.87921 0.90621 0.87606 0.74013 0.74448 0.91452 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 9.26 71.98 0.67 -5.88 16 2 C 0.27 13.47 2.56 44.25 0.11 13.58 16 3 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 4 C -0.55 -27.77 8.73 25.60 0.22 -27.54 16 5 H 0.08 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -52.10 11.32 21.45 0.24 -51.86 16 8 Si 0.97 40.80 29.54 68.60 2.03 42.82 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 12 N -0.70 -26.58 4.96 -446.08 -2.21 -28.79 16 13 C 0.50 18.20 7.12 87.66 0.62 18.82 16 14 O -0.60 -28.30 15.59 -3.02 -0.05 -28.35 16 15 C -0.11 -2.51 2.68 -11.46 -0.03 -2.54 16 16 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.11 -1.83 5.08 30.63 0.16 -1.68 16 18 C -0.12 -1.25 6.08 30.67 0.19 -1.06 16 19 C 0.11 1.47 6.38 86.36 0.55 2.02 16 20 N -1.00 -18.15 3.35 -513.09 -1.72 -19.87 16 21 S 2.81 56.04 6.70 -56.49 -0.38 55.66 16 22 N -1.24 -13.54 9.58 37.02 0.35 -13.18 16 23 O -1.01 -24.23 16.85 -128.00 -2.16 -26.39 16 24 O -1.02 -30.25 16.86 -128.00 -2.16 -32.41 16 25 C 0.14 3.52 5.00 86.36 0.43 3.95 16 26 H 0.06 3.50 6.07 -2.38 -0.01 3.48 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.41 12.40 7.94 -92.72 -0.74 11.66 16 31 H 0.08 1.31 7.53 -2.39 -0.02 1.29 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 1.17 7.12 -2.39 -0.02 1.15 16 37 H 0.43 3.13 8.96 -96.74 -0.87 2.27 16 38 H 0.43 3.03 8.96 -96.74 -0.87 2.16 16 39 H 0.07 1.91 7.96 -2.39 -0.02 1.89 16 40 H 0.08 2.32 7.13 -2.39 -0.02 2.30 16 Total: -1.00 -78.14 336.54 -4.06 -82.20 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -1.38 Total: 19.34 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 3.37 Total: 0.84 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.33 Total: -113.70 kcal Atomic # 8 Polarization: -82.79 SS G_CDS: -4.36 Total: -87.15 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 56.04 SS G_CDS: -0.38 Total: 55.66 kcal Total: -78.14 -4.06 -82.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.305 kcal (2) G-P(sol) polarization free energy of solvation -78.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds