Wall clock time and date at job start Fri Apr 10 2020 14:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46318 * 2 1 4 4 C 1.53316 * 109.46325 * 240.01686 * 2 1 3 5 5 C 1.51195 * 108.61658 * 320.07593 * 4 2 1 6 6 O 1.21285 * 119.77137 * 108.75445 * 5 4 2 7 7 N 1.33630 * 120.45567 * 288.72733 * 5 4 2 8 8 C 1.46915 * 120.62942 * 359.70502 * 7 5 4 9 9 C 1.53220 * 108.82998 * 71.98687 * 8 7 5 10 10 N 1.46155 * 109.70863 * 278.43237 * 9 8 7 11 11 S 1.65604 * 118.71142 * 243.84171 * 10 9 8 12 12 O 1.42101 * 106.40413 * 28.62765 * 11 10 9 13 13 O 1.42105 * 106.39906 * 161.54365 * 11 10 9 14 14 N 1.65595 * 107.21909 * 275.08261 * 11 10 9 15 15 C 1.46501 * 119.99979 * 93.00654 * 14 11 10 16 16 C 1.46502 * 120.00079 * 273.00202 * 14 11 10 17 17 C 1.50705 * 109.47103 * 99.00706 * 16 14 11 18 18 H 1.07999 * 119.99472 * 3.18005 * 17 16 14 19 19 C 1.37869 * 120.00193 * 183.18220 * 17 16 14 20 20 N 1.31519 * 119.99957 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46753 * 89.99989 * 21 19 17 23 23 H 1.48503 * 109.46924 * 209.99666 * 21 19 17 24 24 H 1.48493 * 109.47246 * 330.00011 * 21 19 17 25 25 H 1.09002 * 109.46806 * 177.19078 * 1 2 3 26 26 H 1.08998 * 109.47344 * 57.19412 * 1 2 3 27 27 H 1.08999 * 109.46973 * 297.18706 * 1 2 3 28 28 H 1.09005 * 109.60818 * 79.81481 * 4 2 1 29 29 H 1.08995 * 109.61303 * 200.33076 * 4 2 1 30 30 H 0.97000 * 119.68134 * 179.71863 * 7 5 4 31 31 H 1.09005 * 109.57931 * 191.79536 * 8 7 5 32 32 H 1.09010 * 109.57735 * 312.05080 * 8 7 5 33 33 H 1.09002 * 109.42263 * 38.48282 * 9 8 7 34 34 H 1.08996 * 109.43323 * 158.33521 * 9 8 7 35 35 H 1.09003 * 109.47280 * 90.00083 * 15 14 11 36 36 H 1.08997 * 109.47162 * 209.99690 * 15 14 11 37 37 H 1.09005 * 109.47063 * 329.99892 * 15 14 11 38 38 H 1.09002 * 109.47079 * 219.00633 * 16 14 11 39 39 H 1.09001 * 109.47574 * 339.00754 * 16 14 11 40 40 H 0.97000 * 120.00046 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0408 -0.7224 -1.2521 5 6 1.1656 -1.9293 -1.5039 6 8 0.3988 -1.9316 -2.4436 7 7 1.2315 -2.9936 -0.6985 8 6 2.1586 -3.0138 0.4410 9 6 1.6357 -2.0609 1.5209 10 7 2.0170 -0.6884 1.1938 11 16 3.0419 0.1174 2.2150 12 8 3.8522 -0.8725 2.8337 13 8 3.5751 1.2052 1.4721 14 7 2.1153 0.7811 3.4162 15 6 1.9004 0.0471 4.6658 16 6 1.5104 2.1023 3.2295 17 6 0.0694 1.9415 2.8186 18 1 -0.3679 0.9559 2.7574 19 6 -0.6906 3.0525 2.5206 20 7 -0.1582 4.2528 2.5955 21 14 -2.4766 2.8531 2.0106 22 1 -3.3428 2.8910 3.2162 23 1 -2.8558 3.9581 1.0937 24 1 -2.6508 1.5520 1.3165 25 1 -0.3633 -1.0265 -0.0504 26 1 -0.3634 0.5568 -0.8637 27 1 -0.3633 0.4695 0.9141 28 1 1.9915 -0.0496 -2.1083 29 1 3.0705 -1.0435 -1.0948 30 1 0.6619 -3.7602 -0.8681 31 1 2.2198 -4.0246 0.8443 32 1 3.1469 -2.6908 0.1136 33 1 0.5492 -2.1326 1.5724 34 1 2.0627 -2.3362 2.4852 35 1 2.6840 0.3052 5.3781 36 1 0.9290 0.3143 5.0817 37 1 1.9284 -1.0244 4.4672 38 1 1.5615 2.6607 4.1642 39 1 2.0514 2.6432 2.4531 40 1 -0.6930 5.0345 2.3863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610267321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:52 Heat of formation + Delta-G solvation = -103.245679 kcal Electronic energy + Delta-G solvation = -25694.525859 eV Core-core repulsion = 22057.425724 eV Total energy + Delta-G solvation = -3637.100135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26573 -37.10078 -36.88593 -35.56287 -35.33013 -34.67477 -32.55649 -32.02672 -28.06058 -27.89948 -27.52337 -25.17732 -24.06381 -22.38422 -21.00606 -19.81022 -18.54140 -17.69507 -17.06642 -16.86624 -16.49004 -16.27830 -15.88392 -15.20250 -14.91803 -14.45079 -14.00312 -13.61144 -13.42846 -13.35075 -12.91749 -12.61952 -12.55594 -12.39723 -12.22570 -12.01094 -11.88886 -11.77291 -11.53132 -11.35240 -11.20715 -11.14594 -10.97997 -10.81268 -10.66439 -10.59227 -10.10097 -9.76268 -9.67690 -9.38028 -8.76718 -8.55453 -8.08923 -6.17097 -4.23684 1.12990 2.72007 3.21087 3.26999 3.29707 3.30213 3.32969 3.97064 4.30949 4.55726 4.73149 4.80182 5.01469 5.01992 5.14270 5.17424 5.28867 5.34351 5.45831 5.53669 5.74431 5.80403 5.92524 5.97174 6.00873 6.21062 6.24953 6.47069 6.50397 6.78955 6.83991 6.87264 7.23796 7.28351 7.35652 7.56028 7.79460 8.08973 8.27901 8.80586 9.42090 10.90700 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.007877 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.091627 B = 3553.761396 C = 4832.958931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.161 3.839 3 H 0.121 0.879 4 C -0.151 4.151 5 C 0.529 3.471 6 O -0.554 6.554 7 N -0.727 5.727 8 C 0.096 3.904 9 C 0.099 3.901 10 N -0.997 5.997 11 S 2.779 3.221 12 O -0.998 6.998 13 O -0.976 6.976 14 N -0.996 5.996 15 C 0.106 3.894 16 C 0.244 3.756 17 C -0.538 4.538 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.887 5.887 21 Si 0.887 3.113 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.270 1.270 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -13.120 -1.159 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 H 0.138 0.862 4 C -0.193 4.193 5 C 0.317 3.683 6 O -0.432 6.432 7 N -0.380 5.380 8 C -0.030 4.030 9 C -0.028 4.028 10 N -0.834 5.834 11 S 2.788 3.212 12 O -0.982 6.982 13 O -0.960 6.960 14 N -0.838 5.838 15 C -0.040 4.040 16 C 0.122 3.878 17 C -0.577 4.577 18 H 0.083 0.917 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.715 3.285 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.194 1.194 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.109 0.891 30 H 0.233 0.767 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.474 -12.659 -1.719 13.537 hybrid contribution -1.774 -0.372 -0.147 1.818 sum 2.701 -13.032 -1.866 13.439 Atomic orbital electron populations 1.22408 0.93889 1.01697 1.05249 1.20703 0.95829 0.96585 0.81437 0.86156 1.22499 0.99744 0.95859 1.01245 1.20488 0.82864 0.84095 0.80892 1.90735 1.39964 1.81767 1.30748 1.45919 1.42904 1.19126 1.30053 1.22146 0.93432 1.00811 0.86630 1.21693 1.01732 0.81108 0.98266 1.57907 1.66546 1.22190 1.36778 1.02015 0.73688 0.72621 0.72831 1.93531 1.66325 1.61415 1.76879 1.93574 1.77085 1.53662 1.71655 1.57646 1.69108 1.29762 1.27278 1.21225 1.02100 0.94341 0.86377 1.19229 0.93095 0.76861 0.98636 1.21494 0.96035 0.93135 1.47022 0.91669 1.24931 0.98327 0.95152 0.95254 1.69927 1.36643 0.97895 1.48007 0.86686 0.85069 0.78189 0.78586 1.20729 1.21058 1.19439 0.93338 0.91804 0.88342 0.87458 0.89146 0.76661 0.88618 0.90103 0.90287 0.88348 0.93783 0.90711 0.92969 0.94735 0.92914 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.44 37.16 0.31 -2.65 16 2 C 0.16 2.56 3.09 -67.95 -0.21 2.35 16 3 H 0.12 2.15 6.70 -51.93 -0.35 1.80 16 4 C -0.15 -2.08 5.38 -27.48 -0.15 -2.23 16 5 C 0.53 7.57 5.01 -11.25 -0.06 7.51 16 6 O -0.55 -9.93 17.91 5.55 0.10 -9.83 16 7 N -0.73 -7.89 5.23 -59.99 -0.31 -8.20 16 8 C 0.10 0.89 6.48 -3.70 -0.02 0.87 16 9 C 0.10 1.15 5.70 -4.11 -0.02 1.13 16 10 N -1.00 -15.04 2.89 -107.50 -0.31 -15.35 16 11 S 2.78 50.28 5.96 -107.50 -0.64 49.64 16 12 O -1.00 -18.09 15.77 -57.17 -0.90 -19.00 16 13 O -0.98 -20.76 15.06 -57.17 -0.86 -21.62 16 14 N -1.00 -19.06 3.24 -123.04 -0.40 -19.46 16 15 C 0.11 1.68 10.29 59.85 0.62 2.29 16 16 C 0.24 5.69 5.44 -5.19 -0.03 5.66 16 17 C -0.54 -13.02 8.12 -34.44 -0.28 -13.30 16 18 H 0.07 1.52 6.58 -52.49 -0.35 1.17 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 21 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H 0.05 0.77 5.78 -51.93 -0.30 0.47 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.10 1.91 5.40 -51.93 -0.28 1.63 16 28 H 0.11 1.42 8.13 -51.93 -0.42 0.99 16 29 H 0.09 1.09 7.08 -51.93 -0.37 0.72 16 30 H 0.40 3.69 8.91 -40.82 -0.36 3.33 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.77 7.04 -51.92 -0.37 0.41 16 33 H 0.08 0.91 7.21 -51.93 -0.37 0.54 16 34 H 0.10 1.05 6.92 -51.93 -0.36 0.69 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.05 0.69 7.64 -51.93 -0.40 0.29 16 38 H 0.03 0.85 8.13 -51.93 -0.42 0.43 16 39 H 0.05 1.36 6.90 -51.93 -0.36 1.00 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -31.79 326.84 -8.15 -39.94 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.53 Total: 4.36 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 0.06 Total: 3.25 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.29 Total: -66.63 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -1.66 Total: -50.44 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 50.28 SS G_CDS: -0.64 Total: 49.64 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.79 -8.15 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610267321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.304 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds