Wall clock time and date at job start Fri Apr 10 2020 14:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46318 * 2 1 4 4 C 1.53316 * 109.46325 * 240.01686 * 2 1 3 5 5 C 1.51195 * 108.61658 * 320.07593 * 4 2 1 6 6 O 1.21285 * 119.77137 * 108.75445 * 5 4 2 7 7 N 1.33630 * 120.45567 * 288.72733 * 5 4 2 8 8 C 1.46915 * 120.62942 * 359.70502 * 7 5 4 9 9 C 1.53220 * 108.82998 * 71.98687 * 8 7 5 10 10 N 1.46155 * 109.70863 * 278.43237 * 9 8 7 11 11 S 1.65604 * 118.71142 * 243.84171 * 10 9 8 12 12 O 1.42101 * 106.40413 * 28.62765 * 11 10 9 13 13 O 1.42105 * 106.39906 * 161.54365 * 11 10 9 14 14 N 1.65595 * 107.21909 * 275.08261 * 11 10 9 15 15 C 1.46501 * 119.99979 * 93.00654 * 14 11 10 16 16 C 1.46502 * 120.00079 * 273.00202 * 14 11 10 17 17 C 1.50705 * 109.47103 * 99.00706 * 16 14 11 18 18 H 1.07999 * 119.99472 * 3.18005 * 17 16 14 19 19 C 1.37869 * 120.00193 * 183.18220 * 17 16 14 20 20 N 1.31519 * 119.99957 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46753 * 89.99989 * 21 19 17 23 23 H 1.48503 * 109.46924 * 209.99666 * 21 19 17 24 24 H 1.48493 * 109.47246 * 330.00011 * 21 19 17 25 25 H 1.09002 * 109.46806 * 177.19078 * 1 2 3 26 26 H 1.08998 * 109.47344 * 57.19412 * 1 2 3 27 27 H 1.08999 * 109.46973 * 297.18706 * 1 2 3 28 28 H 1.09005 * 109.60818 * 79.81481 * 4 2 1 29 29 H 1.08995 * 109.61303 * 200.33076 * 4 2 1 30 30 H 0.97000 * 119.68134 * 179.71863 * 7 5 4 31 31 H 1.09005 * 109.57931 * 191.79536 * 8 7 5 32 32 H 1.09010 * 109.57735 * 312.05080 * 8 7 5 33 33 H 1.09002 * 109.42263 * 38.48282 * 9 8 7 34 34 H 1.08996 * 109.43323 * 158.33521 * 9 8 7 35 35 H 1.09003 * 109.47280 * 90.00083 * 15 14 11 36 36 H 1.08997 * 109.47162 * 209.99690 * 15 14 11 37 37 H 1.09005 * 109.47063 * 329.99892 * 15 14 11 38 38 H 1.09002 * 109.47079 * 219.00633 * 16 14 11 39 39 H 1.09001 * 109.47574 * 339.00754 * 16 14 11 40 40 H 0.97000 * 120.00046 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0408 -0.7224 -1.2521 5 6 1.1656 -1.9293 -1.5039 6 8 0.3988 -1.9316 -2.4436 7 7 1.2315 -2.9936 -0.6985 8 6 2.1586 -3.0138 0.4410 9 6 1.6357 -2.0609 1.5209 10 7 2.0170 -0.6884 1.1938 11 16 3.0419 0.1174 2.2150 12 8 3.8522 -0.8725 2.8337 13 8 3.5751 1.2052 1.4721 14 7 2.1153 0.7811 3.4162 15 6 1.9004 0.0471 4.6658 16 6 1.5104 2.1023 3.2295 17 6 0.0694 1.9415 2.8186 18 1 -0.3679 0.9559 2.7574 19 6 -0.6906 3.0525 2.5206 20 7 -0.1582 4.2528 2.5955 21 14 -2.4766 2.8531 2.0106 22 1 -3.3428 2.8910 3.2162 23 1 -2.8558 3.9581 1.0937 24 1 -2.6508 1.5520 1.3165 25 1 -0.3633 -1.0265 -0.0504 26 1 -0.3634 0.5568 -0.8637 27 1 -0.3633 0.4695 0.9141 28 1 1.9915 -0.0496 -2.1083 29 1 3.0705 -1.0435 -1.0948 30 1 0.6619 -3.7602 -0.8681 31 1 2.2198 -4.0246 0.8443 32 1 3.1469 -2.6908 0.1136 33 1 0.5492 -2.1326 1.5724 34 1 2.0627 -2.3362 2.4852 35 1 2.6840 0.3052 5.3781 36 1 0.9290 0.3143 5.0817 37 1 1.9284 -1.0244 4.4672 38 1 1.5615 2.6607 4.1642 39 1 2.0514 2.6432 2.4531 40 1 -0.6930 5.0345 2.3863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610267321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:51 Heat of formation + Delta-G solvation = -128.674421 kcal Electronic energy + Delta-G solvation = -25695.628532 eV Core-core repulsion = 22057.425724 eV Total energy + Delta-G solvation = -3638.202808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36506 -38.39076 -38.28725 -37.17386 -36.85960 -35.72039 -34.44757 -33.19578 -29.63922 -29.04934 -28.82605 -26.75538 -25.12064 -24.14231 -22.18649 -20.90892 -19.81330 -19.07884 -18.55571 -18.34383 -17.98657 -17.44668 -17.19451 -16.50686 -16.40414 -15.96281 -15.24968 -14.98824 -14.90705 -14.52377 -14.19122 -13.94827 -13.88687 -13.80298 -13.63441 -13.35542 -13.32997 -13.03273 -12.96440 -12.88002 -12.80191 -12.59528 -12.40797 -12.30940 -12.20014 -12.07227 -11.75743 -11.57084 -10.85679 -10.57162 -10.47595 -9.89522 -9.65278 -8.14566 -6.25793 -0.30687 1.41468 1.45449 1.52399 1.60520 1.93338 2.38345 2.42135 2.54940 3.18406 3.38292 3.46238 3.70469 3.95777 4.09354 4.13621 4.17374 4.22381 4.32324 4.49511 4.57926 4.69169 4.76623 4.80341 4.89078 4.93854 5.05900 5.12313 5.19515 5.31524 5.42811 5.49931 5.65115 5.80441 5.94132 5.98204 6.14510 6.24930 6.86030 7.26016 7.43371 8.93613 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.007877 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.091627 B = 3553.761396 C = 4832.958931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.163 3.837 3 H 0.095 0.905 4 C -0.148 4.148 5 C 0.528 3.472 6 O -0.595 6.595 7 N -0.711 5.711 8 C 0.096 3.904 9 C 0.086 3.914 10 N -0.990 5.990 11 S 2.791 3.209 12 O -0.993 6.993 13 O -1.013 7.013 14 N -1.004 6.004 15 C 0.097 3.903 16 C 0.258 3.742 17 C -0.525 4.525 18 H 0.077 0.923 19 C 0.017 3.983 20 N -0.928 5.928 21 Si 0.943 3.057 22 H -0.277 1.277 23 H -0.292 1.292 24 H -0.257 1.257 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.409 0.591 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.014 0.986 39 H 0.021 0.979 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -16.172 -0.890 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.056 3.944 3 H 0.113 0.887 4 C -0.190 4.190 5 C 0.316 3.684 6 O -0.476 6.476 7 N -0.363 5.363 8 C -0.029 4.029 9 C -0.039 4.039 10 N -0.829 5.829 11 S 2.801 3.199 12 O -0.977 6.977 13 O -0.997 6.997 14 N -0.845 5.845 15 C -0.048 4.048 16 C 0.134 3.866 17 C -0.564 4.564 18 H 0.095 0.905 19 C -0.182 4.182 20 N -0.568 5.568 21 Si 0.769 3.231 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.181 1.181 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.246 0.754 31 H 0.159 0.841 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.250 -15.776 -1.394 16.398 hybrid contribution -1.632 0.490 -0.174 1.713 sum 2.618 -15.286 -1.568 15.588 Atomic orbital electron populations 1.22295 0.94616 1.01981 1.03604 1.20549 0.95094 0.95991 0.82747 0.88721 1.22445 1.00750 0.95843 0.99938 1.20496 0.82325 0.84800 0.80808 1.90723 1.41604 1.82668 1.32650 1.45848 1.42661 1.18367 1.29424 1.22346 0.92702 1.02640 0.85203 1.22093 1.02439 0.79304 1.00069 1.57690 1.66133 1.23451 1.35672 1.01521 0.73714 0.72136 0.72512 1.93529 1.66369 1.60861 1.76978 1.93527 1.78202 1.55513 1.72452 1.57587 1.68927 1.28757 1.29225 1.21476 1.02403 0.95731 0.85235 1.18760 0.92744 0.78606 0.96492 1.21747 0.96192 0.93346 1.45151 0.90503 1.25655 1.01912 0.94970 0.95679 1.70053 1.38084 0.98677 1.49972 0.85795 0.80863 0.78299 0.78176 1.20324 1.21817 1.18065 0.92135 0.92483 0.90671 0.87370 0.87193 0.75368 0.84075 0.89850 0.89791 0.86662 0.92854 0.90914 0.89842 0.96753 0.96055 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.53 8.44 71.98 0.61 -4.92 16 2 C 0.16 5.08 3.09 45.16 0.14 5.22 16 3 H 0.09 3.48 6.70 -2.39 -0.02 3.46 16 4 C -0.15 -3.86 5.38 30.11 0.16 -3.70 16 5 C 0.53 14.00 5.01 87.99 0.44 14.44 16 6 O -0.59 -20.56 17.91 -3.04 -0.05 -20.61 16 7 N -0.71 -12.94 5.23 -462.73 -2.42 -15.36 16 8 C 0.10 1.35 6.48 86.37 0.56 1.91 16 9 C 0.09 1.69 5.70 86.52 0.49 2.18 16 10 N -0.99 -28.03 2.89 -494.01 -1.43 -29.45 16 11 S 2.79 98.10 5.96 -56.49 -0.34 97.76 16 12 O -0.99 -33.53 15.77 -128.00 -2.02 -35.55 16 13 O -1.01 -43.75 15.06 -128.00 -1.93 -45.67 16 14 N -1.00 -37.84 3.24 -543.20 -1.76 -39.60 16 15 C 0.10 2.87 10.29 127.77 1.32 4.19 16 16 C 0.26 12.30 5.44 85.63 0.47 12.77 16 17 C -0.53 -25.54 8.12 25.60 0.21 -25.33 16 18 H 0.08 3.50 6.58 -2.91 -0.02 3.48 16 19 C 0.02 0.90 5.46 84.65 0.46 1.37 16 20 N -0.93 -52.40 13.29 21.44 0.28 -52.11 16 21 Si 0.94 41.07 29.54 68.60 2.03 43.10 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H 0.06 1.83 5.78 -2.39 -0.01 1.81 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 27 H 0.07 2.85 5.40 -2.39 -0.01 2.84 16 28 H 0.11 2.80 8.13 -2.38 -0.02 2.78 16 29 H 0.11 2.41 7.08 -2.39 -0.02 2.40 16 30 H 0.41 6.04 8.91 -92.71 -0.83 5.22 16 31 H 0.14 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.08 1.23 7.04 -2.38 -0.02 1.21 16 33 H 0.08 1.61 7.21 -2.39 -0.02 1.60 16 34 H 0.12 1.92 6.92 -2.39 -0.02 1.91 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 37 H 0.08 1.93 7.64 -2.38 -0.02 1.91 16 38 H 0.01 0.73 8.13 -2.39 -0.02 0.72 16 39 H 0.02 1.16 6.90 -2.39 -0.02 1.14 16 40 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -69.82 326.84 -2.53 -72.35 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.24 Total: 17.03 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.85 Total: 8.12 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -5.32 Total: -136.52 kcal Atomic # 8 Polarization: -97.83 SS G_CDS: -4.00 Total: -101.83 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 98.10 SS G_CDS: -0.34 Total: 97.76 kcal Total: -69.82 -2.53 -72.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610267321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.326 kcal (2) G-P(sol) polarization free energy of solvation -69.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds