Wall clock time and date at job start Fri Apr 10 2020 14:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.72102 * 2 1 4 4 C 1.52987 * 109.75583 * 239.35958 * 2 1 3 5 5 N 1.45644 * 110.77613 * 287.03441 * 4 2 1 6 6 C 1.46508 * 117.70680 * 158.09997 * 5 4 2 7 7 C 1.33380 * 124.58873 * 338.07822 * 5 4 2 8 8 O 1.21288 * 118.48483 * 184.34553 * 7 5 4 9 9 C 1.50069 * 123.01031 * 4.16048 * 7 5 4 10 10 N 1.47048 * 109.08736 * 347.59312 * 9 7 5 11 11 S 1.65597 * 121.35439 * 222.68397 * 10 9 7 12 12 O 1.42104 * 106.40239 * 156.17450 * 11 10 9 13 13 O 1.42103 * 106.40253 * 23.25893 * 11 10 9 14 14 N 1.65591 * 107.22042 * 269.71409 * 11 10 9 15 15 C 1.46498 * 120.00456 * 269.99973 * 14 11 10 16 16 C 1.46505 * 119.99950 * 90.00082 * 14 11 10 17 17 C 1.50703 * 109.47064 * 265.00136 * 16 14 11 18 18 H 1.07996 * 119.99751 * 359.97438 * 17 16 14 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47171 * 89.99544 * 21 19 17 23 23 H 1.48500 * 109.46632 * 209.99795 * 21 19 17 24 24 H 1.48494 * 109.47053 * 329.99231 * 21 19 17 25 25 H 1.08996 * 109.46923 * 299.39602 * 1 2 3 26 26 H 1.08998 * 109.46494 * 59.38981 * 1 2 3 27 27 H 1.08999 * 109.46964 * 179.39127 * 1 2 3 28 28 H 1.09008 * 109.21537 * 47.37022 * 4 2 1 29 29 H 1.08997 * 109.21819 * 166.74275 * 4 2 1 30 30 H 1.08995 * 109.47101 * 89.99900 * 6 5 4 31 31 H 1.08993 * 109.46953 * 210.00333 * 6 5 4 32 32 H 1.09001 * 109.46767 * 329.99858 * 6 5 4 33 33 H 1.08998 * 109.53351 * 227.66903 * 9 7 5 34 34 H 1.09007 * 109.40830 * 107.43779 * 9 7 5 35 35 H 1.08995 * 109.47255 * 270.00044 * 15 14 11 36 36 H 1.09001 * 109.46791 * 30.00072 * 15 14 11 37 37 H 1.09001 * 109.47612 * 149.99962 * 15 14 11 38 38 H 1.09002 * 109.47068 * 25.00104 * 16 14 11 39 39 H 1.09001 * 109.47372 * 145.00192 * 16 14 11 40 40 H 0.97000 * 120.00333 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8979 1.0261 0.0000 4 6 2.0472 -0.7338 -1.2388 5 7 1.8464 -2.1705 -1.1096 6 6 1.8151 -2.9672 -2.3387 7 6 1.6893 -2.8119 0.0493 8 8 1.6094 -4.0221 0.0345 9 6 1.6110 -2.1052 1.3708 10 7 2.0269 -0.7060 1.1932 11 16 3.0193 0.0434 2.2868 12 8 3.6579 1.1035 1.5885 13 8 3.7328 -0.9886 2.9541 14 7 2.0478 0.7519 3.4253 15 6 1.5800 2.1272 3.2358 16 6 1.6560 0.0034 4.6222 17 6 0.3114 -0.6385 4.3955 18 1 -0.2002 -0.5021 3.4542 19 6 -0.2659 -1.3990 5.3901 20 7 0.3569 -1.5646 6.5365 21 14 -1.9322 -2.1952 5.1089 22 1 -1.7424 -3.5483 4.5274 23 1 -2.6512 -2.3089 6.4032 24 1 -2.7276 -1.3611 4.1725 25 1 -0.3633 0.5044 0.8953 26 1 -0.3632 0.5233 -0.8845 27 1 -0.3633 -1.0276 -0.0109 28 1 1.5123 -0.3744 -2.1180 29 1 3.1113 -0.5302 -1.3583 30 1 2.8240 -3.3012 -2.5809 31 1 1.1704 -3.8340 -2.1935 32 1 1.4277 -2.3591 -3.1561 33 1 2.2724 -2.5947 2.0857 34 1 0.5853 -2.1372 1.7385 35 1 2.2956 2.8189 3.6802 36 1 1.4871 2.3357 2.1699 37 1 0.6093 2.2503 3.7161 38 1 2.3975 -0.7690 4.8266 39 1 1.5954 0.6830 5.4722 40 1 -0.0494 -2.0993 7.2365 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782492362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:55 Heat of formation + Delta-G solvation = -94.162240 kcal Electronic energy + Delta-G solvation = -25430.903723 eV Core-core repulsion = 21794.197476 eV Total energy + Delta-G solvation = -3636.706247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44240 -37.24386 -36.75398 -35.56294 -35.34737 -34.84814 -32.53440 -31.32392 -28.11449 -27.84109 -27.29661 -25.18872 -25.08099 -22.45443 -22.09038 -19.37288 -17.86358 -17.63211 -17.19083 -16.81506 -16.48687 -16.07240 -15.78248 -15.41624 -14.90215 -14.39451 -13.87443 -13.69305 -13.54340 -13.37069 -13.13983 -12.94796 -12.52601 -12.38273 -12.35102 -12.21931 -12.03040 -11.81290 -11.72029 -11.56599 -11.34011 -11.20711 -11.18459 -11.01432 -10.82243 -10.55970 -10.13834 -10.04337 -9.83269 -8.91695 -8.73148 -8.53297 -8.11449 -6.15312 -4.22872 1.06258 2.69642 2.91024 3.23848 3.28110 3.31702 3.33754 3.96473 4.32858 4.47695 4.52568 4.70071 4.91996 5.09670 5.16927 5.19363 5.26309 5.35114 5.40726 5.49834 5.55871 5.66669 5.74123 5.79339 5.91035 5.99963 6.02580 6.16424 6.26876 6.29427 6.46004 6.61590 7.27071 7.36191 7.40666 7.55764 7.80679 8.09236 8.18716 8.81778 9.43972 10.92665 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.007265 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.508718 B = 3853.275431 C = 4888.603557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.114 0.886 4 C 0.108 3.892 5 N -0.605 5.605 6 C 0.078 3.922 7 C 0.516 3.484 8 O -0.548 6.548 9 C 0.115 3.885 10 N -1.005 6.005 11 S 2.787 3.213 12 O -0.994 6.994 13 O -0.971 6.971 14 N -0.994 5.994 15 C 0.106 3.894 16 C 0.243 3.757 17 C -0.542 4.542 18 H 0.063 0.937 19 C 0.067 3.933 20 N -0.887 5.887 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.039 0.961 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 5.204 -15.459 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 H 0.132 0.868 4 C -0.017 4.017 5 N -0.339 5.339 6 C -0.064 4.064 7 C 0.303 3.697 8 O -0.425 6.425 9 C -0.013 4.013 10 N -0.843 5.843 11 S 2.796 3.204 12 O -0.978 6.978 13 O -0.955 6.955 14 N -0.836 5.836 15 C -0.040 4.040 16 C 0.121 3.879 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.718 3.282 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.105 4.522 -15.235 15.930 hybrid contribution -1.503 -0.386 -0.032 1.552 sum -0.397 4.136 -15.267 15.822 Atomic orbital electron populations 1.22140 0.93929 1.03044 1.02975 1.21277 0.95543 0.96657 0.83780 0.86815 1.21808 1.01577 0.79587 0.98692 1.47085 1.72042 1.08026 1.06766 1.21705 1.02263 0.96789 0.85687 1.20403 0.75463 0.87786 0.86012 1.90726 1.50657 1.13967 1.87134 1.21479 1.05241 0.80060 0.94509 1.58636 1.68029 1.20664 1.37012 1.01806 0.73549 0.72783 0.72228 1.93534 1.73474 1.56335 1.74427 1.93587 1.69984 1.58061 1.73842 1.57656 1.68520 1.21715 1.35701 1.21231 1.00593 0.82149 1.00052 1.19258 0.96063 0.91474 0.81093 1.21509 1.04004 1.31628 1.01026 0.91889 1.24945 0.97694 0.96090 0.94983 1.69924 1.38428 1.39289 1.04871 0.86625 0.83831 0.80036 0.77742 1.20241 1.21111 1.19878 0.90791 0.91523 0.92137 0.89571 0.91191 0.92774 0.90377 0.91387 0.85210 0.87005 0.93657 0.92994 0.90694 0.93074 0.94303 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.04 37.16 0.34 -1.44 16 2 C 0.13 1.61 3.25 -67.51 -0.22 1.39 16 3 H 0.11 1.24 7.11 -51.93 -0.37 0.87 16 4 C 0.11 1.12 5.94 -4.51 -0.03 1.09 16 5 N -0.61 -7.79 3.10 -182.93 -0.57 -8.35 16 6 C 0.08 0.81 10.19 59.85 0.61 1.42 16 7 C 0.52 8.53 7.02 -11.91 -0.08 8.44 16 8 O -0.55 -10.70 16.25 5.55 0.09 -10.61 16 9 C 0.12 1.98 5.85 -5.20 -0.03 1.95 16 10 N -1.00 -15.98 3.15 -107.95 -0.34 -16.32 16 11 S 2.79 52.67 6.13 -107.50 -0.66 52.01 16 12 O -0.99 -18.67 15.94 -57.17 -0.91 -19.58 16 13 O -0.97 -21.88 15.34 -57.17 -0.88 -22.76 16 14 N -0.99 -19.36 3.23 -123.05 -0.40 -19.76 16 15 C 0.11 1.68 10.31 59.85 0.62 2.30 16 16 C 0.24 5.79 5.41 -5.19 -0.03 5.76 16 17 C -0.54 -13.49 9.38 -34.44 -0.32 -13.81 16 18 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 19 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -24.85 13.29 55.43 0.74 -24.12 16 21 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.74 6.83 -51.93 -0.35 0.38 16 28 H 0.09 0.61 7.79 -51.92 -0.40 0.20 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.91 7.23 -51.93 -0.38 0.54 16 32 H 0.07 0.49 7.80 -51.93 -0.41 0.08 16 33 H 0.13 2.47 6.98 -51.93 -0.36 2.11 16 34 H 0.11 1.93 7.85 -51.92 -0.41 1.53 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 37 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 39 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -32.74 338.45 -8.03 -40.78 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.94 Total: -0.39 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 0.75 Total: 8.75 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -0.57 Total: -68.55 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -1.70 Total: -52.96 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 52.67 SS G_CDS: -0.66 Total: 52.01 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.74 -8.03 -40.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782492362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.385 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds