Wall clock time and date at job start Fri Apr 10 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65600 * 119.99818 * 2 1 4 4 O 1.42106 * 104.27813 * 181.07255 * 3 2 1 5 5 O 1.42101 * 104.27750 * 308.92859 * 3 2 1 6 6 C 1.81397 * 104.45088 * 65.00124 * 3 2 1 7 7 C 1.50701 * 109.47123 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00161 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99762 * 179.97438 * 7 6 3 10 10 C 1.47420 * 125.64913 * 0.03199 * 9 7 6 11 11 C 1.54917 * 104.83382 * 204.09032 * 10 9 7 12 12 C 1.55163 * 101.57655 * 322.99160 * 11 10 9 13 13 H 1.09000 * 110.72154 * 277.13537 * 12 11 10 14 14 N 1.46500 * 110.71721 * 153.86530 * 12 11 10 15 15 C 1.36936 * 119.99914 * 86.45467 * 14 12 11 16 16 H 1.08001 * 120.00382 * 359.97438 * 15 14 12 17 17 C 1.38820 * 119.99876 * 179.97438 * 15 14 12 18 18 N 1.31613 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99800 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47354 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47028 * 120.00196 * 19 17 15 22 22 H 1.48498 * 109.47242 * 239.99784 * 19 17 15 23 23 C 1.47021 * 125.64680 * 179.72288 * 9 7 6 24 24 H 1.09005 * 109.88102 * 298.39398 * 23 9 7 25 25 C 1.53002 * 109.88674 * 59.55783 * 23 9 7 26 26 H 1.09002 * 109.47391 * 59.99851 * 1 2 3 27 27 H 1.09001 * 109.46813 * 299.99907 * 1 2 3 28 28 H 1.09004 * 109.47041 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00420 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47104 * 300.00206 * 6 3 2 31 31 H 1.08998 * 109.46952 * 60.00008 * 6 3 2 32 32 H 1.08996 * 110.36858 * 322.92512 * 10 9 7 33 33 H 1.08999 * 110.36928 * 85.14307 * 10 9 7 34 34 H 1.08992 * 111.00300 * 81.05807 * 11 10 9 35 35 H 1.08991 * 111.00497 * 204.88141 * 11 10 9 36 36 H 0.97000 * 119.99955 * 266.45224 * 14 12 11 37 37 H 0.96999 * 119.99808 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.46621 * 58.54389 * 25 23 9 39 39 H 1.08995 * 109.47193 * 178.54720 * 25 23 9 40 40 H 1.09004 * 109.47032 * 298.55419 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6606 1.0493 -0.0258 5 8 1.7188 2.1703 -1.0713 6 6 1.8764 2.1973 1.5920 7 6 2.5792 3.5250 1.7118 8 8 3.2906 3.9180 0.8116 9 7 2.4163 4.2762 2.8189 10 6 1.5843 3.9216 3.9831 11 6 1.2307 5.2767 4.6454 12 6 2.5461 6.0745 4.4436 13 1 3.2691 5.8294 5.2217 14 7 2.2798 7.5148 4.4167 15 6 2.2336 8.2246 5.5869 16 1 2.3932 7.7225 6.5297 17 6 1.9817 9.5895 5.5613 18 7 1.7878 10.2014 4.4123 19 14 1.9181 10.5575 7.1576 20 1 2.1676 9.6435 8.3011 21 1 2.9581 11.6174 7.1356 22 1 0.5786 11.1814 7.3051 23 6 3.0439 5.5821 3.0683 24 1 4.1287 5.4757 3.0809 25 6 2.6284 6.5754 1.9812 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 0.7988 2.3496 1.6510 31 1 2.1958 1.5431 2.4032 32 1 0.6780 3.4096 3.6598 33 1 2.1470 3.2948 4.6748 34 1 0.3992 5.7579 4.1307 35 1 1.0099 5.1478 5.7049 36 1 2.1361 7.9657 3.5700 37 1 1.6121 11.1552 4.3945 38 1 1.5425 6.6704 1.9719 39 1 3.0765 7.5475 2.1868 40 1 2.9699 6.2157 1.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180157030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:59 Heat of formation + Delta-G solvation = -77.864725 kcal Electronic energy + Delta-G solvation = -23793.900895 eV Core-core repulsion = 20157.901361 eV Total energy + Delta-G solvation = -3635.999534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25763 -37.79715 -37.26974 -36.09953 -35.37152 -34.33718 -32.13131 -30.91921 -30.43648 -28.53472 -26.39025 -25.32128 -23.63297 -22.83177 -20.45834 -19.48694 -18.84089 -18.18442 -17.58081 -17.13790 -16.68399 -16.51629 -16.02563 -15.35350 -14.98344 -14.74946 -14.34769 -14.22901 -13.83805 -13.46565 -13.26902 -13.16937 -12.76886 -12.61018 -12.21976 -12.17361 -12.13943 -11.92746 -11.91320 -11.65007 -11.36812 -11.29901 -11.02640 -10.88466 -10.55798 -10.34614 -10.12357 -10.04909 -9.95114 -9.70836 -9.02247 -8.64360 -7.09316 -5.87096 -3.17603 -0.08430 2.36609 2.46831 2.85201 3.37276 3.42864 3.45478 3.60497 3.93402 4.07478 4.49786 4.56727 4.58855 4.76882 4.88526 4.99127 5.08722 5.22873 5.31275 5.32665 5.42187 5.46316 5.55007 5.70025 5.89837 6.00763 6.13487 6.19651 6.44417 6.47315 6.51727 6.57482 6.73322 6.90175 7.45620 7.61275 7.90229 8.31038 9.42950 9.96930 10.31886 11.35278 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.037308 B = 0.003065 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.321817 B = 9134.612888 C = 9380.128575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.127 6.127 3 S 2.648 3.352 4 O -0.942 6.942 5 O -0.937 6.937 6 C -0.669 4.669 7 C 0.554 3.446 8 O -0.538 6.538 9 N -0.595 5.595 10 C 0.094 3.906 11 C -0.154 4.154 12 C 0.174 3.826 13 H 0.065 0.935 14 N -0.717 5.717 15 C -0.247 4.247 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.929 5.929 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.125 3.875 24 H 0.078 0.922 25 C -0.163 4.163 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.418 0.582 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.392 0.608 37 H 0.257 0.743 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 -22.573 -3.942 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.887 5.887 3 S 2.734 3.266 4 O -0.932 6.932 5 O -0.926 6.926 6 C -0.797 4.797 7 C 0.340 3.660 8 O -0.417 6.417 9 N -0.328 5.328 10 C -0.029 4.029 11 C -0.196 4.196 12 C 0.062 3.938 13 H 0.083 0.917 14 N -0.361 5.361 15 C -0.378 4.378 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.022 3.978 24 H 0.096 0.904 25 C -0.221 4.221 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.252 0.748 30 H 0.175 0.825 31 H 0.176 0.824 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.732 -21.784 -4.966 22.653 hybrid contribution -0.547 0.212 1.520 1.629 sum -4.279 -21.572 -3.447 22.261 Atomic orbital electron populations 1.21543 0.78755 1.04376 1.02122 1.55615 1.16106 1.24933 1.92070 1.04149 0.73587 0.73123 0.75720 1.93599 1.32164 1.81119 1.86352 1.93598 1.78885 1.72060 1.48085 1.31075 1.12484 1.07605 1.28541 1.18640 0.81488 0.83751 0.82148 1.90842 1.39932 1.72490 1.38477 1.48455 1.47195 1.20397 1.16711 1.22491 0.94070 0.99221 0.87163 1.23581 1.01815 0.93504 1.00663 1.21176 0.93692 0.86526 0.92407 0.91738 1.42682 1.84651 1.01061 1.07661 1.19269 1.41596 0.90474 0.86431 0.90976 1.24773 1.02266 0.96681 0.96902 1.69666 1.54818 1.09670 1.23526 0.86098 0.77238 0.80061 0.82598 1.20510 1.21779 1.21823 1.21988 0.97132 0.81280 0.97398 0.90423 1.22048 1.02063 0.99696 0.98266 0.91073 0.92254 0.89827 0.74782 0.82544 0.82369 0.91185 0.91171 0.90457 0.90306 0.77004 0.93336 0.92304 0.89858 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.03 59.85 0.66 1.01 16 2 N -1.13 -7.29 6.08 -16.63 -0.10 -7.39 16 3 S 2.65 30.01 4.60 -107.50 -0.49 29.52 16 4 O -0.94 -13.98 18.08 -57.55 -1.04 -15.02 16 5 O -0.94 -14.26 17.73 -57.55 -1.02 -15.28 16 6 C -0.67 -6.22 5.51 36.01 0.20 -6.02 16 7 C 0.55 8.32 7.65 -10.98 -0.08 8.24 16 8 O -0.54 -10.19 14.75 5.56 0.08 -10.11 16 9 N -0.60 -8.77 3.08 -163.01 -0.50 -9.27 16 10 C 0.09 1.09 6.69 -2.53 -0.02 1.08 16 11 C -0.15 -2.34 6.77 -24.57 -0.17 -2.50 16 12 C 0.17 3.21 3.45 -66.09 -0.23 2.98 16 13 H 0.06 1.18 8.12 -51.93 -0.42 0.75 16 14 N -0.72 -16.88 5.02 -51.64 -0.26 -17.14 16 15 C -0.25 -6.47 9.98 -15.06 -0.15 -6.62 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 19 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.13 2.17 3.49 -66.95 -0.23 1.94 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 25 C -0.16 -3.05 7.93 37.16 0.29 -2.75 16 26 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 27 H 0.06 0.15 7.73 -51.93 -0.40 -0.25 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.42 1.93 8.92 -34.47 -0.31 1.62 16 30 H 0.16 0.95 7.48 -51.93 -0.39 0.56 16 31 H 0.16 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.62 7.48 -51.93 -0.39 0.23 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.39 9.80 4.94 -40.82 -0.20 9.60 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 39 H 0.08 1.69 6.73 -51.93 -0.35 1.34 16 40 H 0.06 1.21 6.74 -51.93 -0.35 0.86 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -36.84 340.50 -8.05 -44.89 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.73 Total: 7.57 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 0.18 Total: -3.03 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.14 Total: -60.23 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.98 Total: -40.41 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 30.01 SS G_CDS: -0.49 Total: 29.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.84 -8.05 -44.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180157030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.970 kcal (2) G-P(sol) polarization free energy of solvation -36.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds