Wall clock time and date at job start Fri Apr 10 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65600 * 119.99818 * 2 1 4 4 O 1.42106 * 104.27813 * 181.07255 * 3 2 1 5 5 O 1.42101 * 104.27750 * 308.92859 * 3 2 1 6 6 C 1.81397 * 104.45088 * 65.00124 * 3 2 1 7 7 C 1.50701 * 109.47123 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00161 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99762 * 179.97438 * 7 6 3 10 10 C 1.47420 * 125.64913 * 0.03199 * 9 7 6 11 11 C 1.54917 * 104.83382 * 204.09032 * 10 9 7 12 12 C 1.55163 * 101.57655 * 322.99160 * 11 10 9 13 13 H 1.09000 * 110.72154 * 277.13537 * 12 11 10 14 14 N 1.46500 * 110.71721 * 153.86530 * 12 11 10 15 15 C 1.36936 * 119.99914 * 86.45467 * 14 12 11 16 16 H 1.08001 * 120.00382 * 359.97438 * 15 14 12 17 17 C 1.38820 * 119.99876 * 179.97438 * 15 14 12 18 18 N 1.31613 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99800 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47354 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47028 * 120.00196 * 19 17 15 22 22 H 1.48498 * 109.47242 * 239.99784 * 19 17 15 23 23 C 1.47021 * 125.64680 * 179.72288 * 9 7 6 24 24 H 1.09005 * 109.88102 * 298.39398 * 23 9 7 25 25 C 1.53002 * 109.88674 * 59.55783 * 23 9 7 26 26 H 1.09002 * 109.47391 * 59.99851 * 1 2 3 27 27 H 1.09001 * 109.46813 * 299.99907 * 1 2 3 28 28 H 1.09004 * 109.47041 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00420 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47104 * 300.00206 * 6 3 2 31 31 H 1.08998 * 109.46952 * 60.00008 * 6 3 2 32 32 H 1.08996 * 110.36858 * 322.92512 * 10 9 7 33 33 H 1.08999 * 110.36928 * 85.14307 * 10 9 7 34 34 H 1.08992 * 111.00300 * 81.05807 * 11 10 9 35 35 H 1.08991 * 111.00497 * 204.88141 * 11 10 9 36 36 H 0.97000 * 119.99955 * 266.45224 * 14 12 11 37 37 H 0.96999 * 119.99808 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.46621 * 58.54389 * 25 23 9 39 39 H 1.08995 * 109.47193 * 178.54720 * 25 23 9 40 40 H 1.09004 * 109.47032 * 298.55419 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6606 1.0493 -0.0258 5 8 1.7188 2.1703 -1.0713 6 6 1.8764 2.1973 1.5920 7 6 2.5792 3.5250 1.7118 8 8 3.2906 3.9180 0.8116 9 7 2.4163 4.2762 2.8189 10 6 1.5843 3.9216 3.9831 11 6 1.2307 5.2767 4.6454 12 6 2.5461 6.0745 4.4436 13 1 3.2691 5.8294 5.2217 14 7 2.2798 7.5148 4.4167 15 6 2.2336 8.2246 5.5869 16 1 2.3932 7.7225 6.5297 17 6 1.9817 9.5895 5.5613 18 7 1.7878 10.2014 4.4123 19 14 1.9181 10.5575 7.1576 20 1 2.1676 9.6435 8.3011 21 1 2.9581 11.6174 7.1356 22 1 0.5786 11.1814 7.3051 23 6 3.0439 5.5821 3.0683 24 1 4.1287 5.4757 3.0809 25 6 2.6284 6.5754 1.9812 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 0.7988 2.3496 1.6510 31 1 2.1958 1.5431 2.4032 32 1 0.6780 3.4096 3.6598 33 1 2.1470 3.2948 4.6748 34 1 0.3992 5.7579 4.1307 35 1 1.0099 5.1478 5.7049 36 1 2.1361 7.9657 3.5700 37 1 1.6121 11.1552 4.3945 38 1 1.5425 6.6704 1.9719 39 1 3.0765 7.5475 2.1868 40 1 2.9699 6.2157 1.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180157030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:59 Heat of formation + Delta-G solvation = -109.481157 kcal Electronic energy + Delta-G solvation = -23795.271886 eV Core-core repulsion = 20157.901361 eV Total energy + Delta-G solvation = -3637.370525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47887 -39.12876 -38.25017 -37.06882 -36.04539 -35.83669 -33.71674 -32.28162 -31.69670 -29.95847 -26.82375 -26.77578 -25.43798 -24.04764 -21.59573 -20.53639 -19.99302 -19.45486 -19.04465 -18.08905 -17.70700 -17.44612 -17.06775 -16.62616 -16.34134 -15.83615 -15.75598 -15.48506 -14.76109 -14.70660 -14.55124 -13.96977 -13.84954 -13.69736 -13.61276 -13.27586 -13.22558 -13.15284 -13.07103 -12.94929 -12.89333 -12.60626 -12.49606 -12.17642 -12.05902 -12.01266 -11.63611 -11.55664 -11.28387 -10.93323 -10.49563 -9.84238 -9.01888 -7.93838 -5.23106 -0.91939 1.27300 1.49547 1.50657 1.59819 1.61359 1.91420 2.57473 2.76852 3.14689 3.17521 3.39476 3.69049 3.76980 3.86578 3.96259 4.15755 4.19096 4.26779 4.34444 4.40080 4.52162 4.61499 4.71559 4.75935 4.83382 4.93537 5.01879 5.07537 5.17765 5.20791 5.25444 5.48009 5.55798 6.12414 6.27473 6.32599 6.76978 7.35171 8.08692 8.31598 9.30087 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.037308 B = 0.003065 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.321817 B = 9134.612888 C = 9380.128575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -1.110 6.110 3 S 2.650 3.350 4 O -0.989 6.989 5 O -0.988 6.988 6 C -0.650 4.650 7 C 0.541 3.459 8 O -0.589 6.589 9 N -0.595 5.595 10 C 0.097 3.903 11 C -0.146 4.146 12 C 0.165 3.835 13 H 0.070 0.930 14 N -0.734 5.734 15 C -0.236 4.236 16 H 0.084 0.916 17 C -0.077 4.077 18 N -0.972 5.972 19 Si 0.973 3.027 20 H -0.261 1.261 21 H -0.299 1.299 22 H -0.296 1.296 23 C 0.129 3.871 24 H 0.070 0.930 25 C -0.150 4.150 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.428 0.572 30 H 0.200 0.800 31 H 0.206 0.794 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.380 0.620 37 H 0.250 0.750 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 -25.831 -1.616 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.874 5.874 3 S 2.740 3.260 4 O -0.979 6.979 5 O -0.978 6.978 6 C -0.780 4.780 7 C 0.329 3.671 8 O -0.471 6.471 9 N -0.327 5.327 10 C -0.024 4.024 11 C -0.187 4.187 12 C 0.055 3.945 13 H 0.088 0.912 14 N -0.377 5.377 15 C -0.368 4.368 16 H 0.102 0.898 17 C -0.269 4.269 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.185 1.185 21 H -0.227 1.227 22 H -0.223 1.223 23 C 0.024 3.976 24 H 0.088 0.912 25 C -0.209 4.209 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.130 0.870 29 H 0.265 0.735 30 H 0.217 0.783 31 H 0.223 0.777 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.216 0.784 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.303 -25.147 -2.626 25.834 hybrid contribution -0.072 1.121 0.801 1.379 sum -5.375 -24.026 -1.825 24.687 Atomic orbital electron populations 1.21908 0.76925 1.06505 1.02896 1.55135 1.17024 1.23459 1.91741 1.03589 0.72693 0.73590 0.76136 1.93536 1.35143 1.81934 1.87273 1.93542 1.79368 1.73706 1.51152 1.30944 1.14464 1.04461 1.28119 1.19543 0.81103 0.85340 0.81154 1.90833 1.42155 1.74024 1.40132 1.48480 1.47266 1.19137 1.17785 1.22759 0.95857 0.97560 0.86227 1.23383 0.98664 0.94790 1.01871 1.21412 0.95839 0.84271 0.93013 0.91211 1.42877 1.84995 1.03348 1.06470 1.19691 1.38795 0.90701 0.87614 0.89846 1.25565 1.03625 0.98010 0.99688 1.69829 1.57394 1.09367 1.25638 0.85077 0.76383 0.78541 0.79743 1.18526 1.22709 1.22346 1.21710 0.96990 0.82684 0.96175 0.91217 1.21876 1.01260 0.99103 0.98632 0.92591 0.89373 0.87044 0.73485 0.78279 0.77658 0.86830 0.87803 0.92365 0.88855 0.78376 0.94140 0.92920 0.92256 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 11.03 127.77 1.41 1.72 16 2 N -1.11 -11.09 6.08 -206.53 -1.25 -12.35 16 3 S 2.65 56.06 4.60 -56.49 -0.26 55.80 16 4 O -0.99 -29.10 18.08 -127.64 -2.31 -31.41 16 5 O -0.99 -30.18 17.73 -127.64 -2.26 -32.44 16 6 C -0.65 -9.18 5.51 71.24 0.39 -8.79 16 7 C 0.54 15.00 7.65 87.66 0.67 15.67 16 8 O -0.59 -22.44 14.75 -3.03 -0.04 -22.49 16 9 N -0.59 -15.88 3.08 -788.04 -2.43 -18.31 16 10 C 0.10 1.75 6.69 86.86 0.58 2.33 16 11 C -0.15 -3.97 6.77 31.99 0.22 -3.76 16 12 C 0.16 5.86 3.45 46.18 0.16 6.02 16 13 H 0.07 2.41 8.12 -2.39 -0.02 2.39 16 14 N -0.73 -34.85 5.02 -317.30 -1.59 -36.44 16 15 C -0.24 -12.33 9.98 84.04 0.84 -11.49 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 18 N -0.97 -58.49 13.06 21.65 0.28 -58.20 16 19 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 23 C 0.13 4.42 3.49 45.34 0.16 4.58 16 24 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 25 C -0.15 -5.87 7.93 71.98 0.57 -5.30 16 26 H 0.06 0.48 8.04 -2.39 -0.02 0.46 16 27 H 0.09 -0.05 7.73 -2.39 -0.02 -0.06 16 28 H 0.11 -0.02 8.14 -2.38 -0.02 -0.04 16 29 H 0.43 2.77 8.92 -96.75 -0.86 1.90 16 30 H 0.20 1.12 7.48 -2.39 -0.02 1.10 16 31 H 0.21 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 1.17 7.48 -2.39 -0.02 1.15 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.38 19.70 4.94 -92.71 -0.46 19.24 16 37 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.05 2.06 8.05 -2.38 -0.02 2.04 16 39 H 0.06 2.56 6.73 -2.39 -0.02 2.55 16 40 H 0.06 2.25 6.74 -2.39 -0.02 2.23 16 Total: -1.00 -86.24 340.50 -2.63 -88.87 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -0.25 Total: 23.08 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.47 Total: -2.80 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -4.99 Total: -125.30 kcal Atomic # 8 Polarization: -81.73 SS G_CDS: -4.62 Total: -86.34 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 56.06 SS G_CDS: -0.26 Total: 55.80 kcal Total: -86.24 -2.63 -88.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180157030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.608 kcal (2) G-P(sol) polarization free energy of solvation -86.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds