Wall clock time and date at job start Fri Apr 10 2020 14:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65597 * 120.00422 * 2 1 4 4 O 1.42101 * 104.27731 * 308.92460 * 3 2 1 5 5 O 1.42101 * 104.27875 * 181.07051 * 3 2 1 6 6 C 1.81399 * 104.45063 * 64.99762 * 3 2 1 7 7 C 1.50694 * 109.46995 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00666 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99858 * 179.97438 * 7 6 3 10 10 C 1.46500 * 119.99869 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47194 * 35.00352 * 10 9 7 12 12 C 1.52999 * 109.47087 * 274.99848 * 10 9 7 13 13 C 1.53003 * 109.47163 * 155.00347 * 10 9 7 14 14 C 1.53486 * 114.20850 * 180.02562 * 13 10 9 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 10 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 H 1.09005 * 109.46923 * 60.00067 * 1 2 3 26 26 H 1.08994 * 109.47495 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47083 * 300.00762 * 1 2 3 28 28 H 0.97008 * 120.00034 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46748 * 60.00241 * 6 3 2 30 30 H 1.08998 * 109.47168 * 300.00169 * 6 3 2 31 31 H 0.96997 * 119.99750 * 0.02562 * 9 7 6 32 32 H 1.09004 * 109.47074 * 180.02562 * 12 10 9 33 33 H 1.08994 * 109.47561 * 300.00057 * 12 10 9 34 34 H 1.09000 * 109.46986 * 60.00526 * 12 10 9 35 35 H 1.08998 * 113.41116 * 46.79441 * 13 10 9 36 36 H 1.09003 * 113.46770 * 332.73878 * 14 13 10 37 37 H 1.09004 * 113.52153 * 202.31032 * 14 13 10 38 38 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 39 39 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 40 40 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7190 2.1702 -1.0714 5 8 3.6607 1.0490 -0.0257 6 6 1.8765 2.1973 1.5920 7 6 2.5794 3.5249 1.7118 8 8 3.2909 3.9178 0.8116 9 7 2.4165 4.2762 2.8188 10 6 3.0994 5.5671 2.9350 11 1 3.1502 6.0408 1.9546 12 6 4.5161 5.3483 3.4699 13 6 2.3246 6.4692 3.8978 14 6 2.9483 7.8570 4.0997 15 7 2.1831 8.3139 2.9298 16 6 2.3277 9.2846 1.9748 17 1 3.2431 9.8550 1.9190 18 6 1.2979 9.5355 1.0786 19 7 1.3910 10.5400 0.2333 20 14 -0.2205 8.4472 1.0722 21 1 -1.2168 8.9933 0.1160 22 1 0.1582 7.0716 0.6608 23 1 -0.8098 8.4118 2.4348 24 6 1.1910 7.2738 3.2408 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.9500 -0.8401 0.0004 29 1 2.1958 1.5430 2.4032 30 1 0.7988 2.3497 1.6509 31 1 1.8471 3.9622 3.5386 32 1 5.0240 6.3088 3.5567 33 1 4.4653 4.8746 4.4502 34 1 5.0681 4.7057 2.7840 35 1 2.0367 5.9693 4.8226 36 1 4.0274 7.8744 3.9463 37 1 2.6472 8.3381 5.0303 38 1 2.1433 11.1501 0.2860 39 1 0.4259 7.6004 3.9450 40 1 0.7729 6.7943 2.3556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675364569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:15 Heat of formation + Delta-G solvation = -39.101055 kcal Electronic energy + Delta-G solvation = -23912.197618 eV Core-core repulsion = 20277.879003 eV Total energy + Delta-G solvation = -3634.318615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.16530 -38.71255 -37.24893 -36.07891 -35.38968 -35.00878 -32.47762 -31.55787 -29.51930 -27.83746 -26.37262 -25.43916 -23.86608 -21.78895 -20.79406 -19.82054 -19.05022 -18.19504 -17.50157 -17.10258 -16.99015 -16.53833 -15.97903 -15.76043 -15.18402 -14.75533 -14.47868 -14.22228 -13.89666 -13.59203 -13.32166 -13.23300 -13.17263 -12.94859 -12.27496 -12.18540 -12.11268 -12.09442 -11.89019 -11.52512 -11.37492 -11.26087 -11.01049 -10.65810 -10.41685 -10.29752 -10.12722 -9.97132 -9.27651 -9.12268 -9.04453 -8.86292 -7.14691 -6.25407 -3.20062 -0.07613 2.34168 2.47725 2.93492 3.40195 3.47391 3.65225 3.66333 3.94102 4.23071 4.57875 4.59989 4.62960 4.72707 4.75609 4.87774 5.00069 5.00894 5.33942 5.34500 5.45366 5.54952 5.60990 5.79587 5.86412 6.01276 6.16466 6.22038 6.25835 6.33744 6.44402 6.50877 6.53411 6.83694 7.12922 7.30072 7.98029 8.27749 9.01114 9.53375 10.38376 11.24546 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.004358 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.190461 B = 6423.229848 C = 7185.293374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -1.127 6.127 3 S 2.646 3.354 4 O -0.932 6.932 5 O -0.942 6.942 6 C -0.676 4.676 7 C 0.539 3.461 8 O -0.529 6.529 9 N -0.707 5.707 10 C 0.160 3.840 11 H 0.108 0.892 12 C -0.159 4.159 13 C -0.143 4.143 14 C 0.131 3.869 15 N -0.626 5.626 16 C -0.305 4.305 17 H 0.083 0.917 18 C -0.023 4.023 19 N -0.933 5.933 20 Si 1.067 2.933 21 H -0.294 1.294 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.098 3.902 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.418 0.582 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.400 0.600 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.046 0.954 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -24.690 9.144 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.887 5.887 3 S 2.731 3.269 4 O -0.922 6.922 5 O -0.932 6.932 6 C -0.803 4.803 7 C 0.322 3.678 8 O -0.406 6.406 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.126 0.874 12 C -0.217 4.217 13 C -0.163 4.163 14 C 0.004 3.996 15 N -0.355 5.355 16 C -0.431 4.431 17 H 0.101 0.899 18 C -0.222 4.222 19 N -0.575 5.575 20 Si 0.899 3.101 21 H -0.222 1.222 22 H -0.220 1.220 23 H -0.216 1.216 24 C -0.027 4.027 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.252 0.748 29 H 0.178 0.822 30 H 0.177 0.823 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.030 -23.944 6.848 25.088 hybrid contribution 0.761 -0.210 2.140 2.281 sum -2.269 -24.155 8.988 25.872 Atomic orbital electron populations 1.21550 0.78740 1.04357 1.02204 1.55626 1.16113 1.24912 1.92061 1.04241 0.73659 0.73172 0.75785 1.93623 1.78794 1.71942 1.47837 1.93598 1.32126 1.81147 1.86325 1.31111 1.12660 1.07665 1.28898 1.19073 0.81326 0.84184 0.83181 1.90898 1.39004 1.72004 1.38686 1.45951 1.49701 1.20911 1.19143 1.20819 0.90750 0.81006 1.01726 0.87416 1.22129 0.96196 1.02765 1.00607 1.23211 0.99347 0.95964 0.97733 1.22352 0.96768 0.89187 0.91285 1.46024 1.23197 1.38950 1.27304 1.20144 1.02307 1.12310 1.08326 0.89885 1.25662 1.00931 1.00223 0.95338 1.70906 1.33084 1.15058 1.38500 0.83772 0.76225 0.74815 0.75247 1.22152 1.21967 1.21581 1.22841 0.93033 0.89345 0.97521 0.90989 0.89833 0.92255 0.74806 0.82237 0.82332 0.76535 0.90801 0.92778 0.92214 0.90362 0.93154 0.94166 0.92896 0.93623 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 11.03 59.84 0.66 1.03 16 2 N -1.13 -7.60 6.07 -16.63 -0.10 -7.70 16 3 S 2.65 31.35 4.60 -107.50 -0.49 30.85 16 4 O -0.93 -15.39 17.73 -57.55 -1.02 -16.41 16 5 O -0.94 -14.27 18.08 -57.55 -1.04 -15.31 16 6 C -0.68 -5.94 6.51 36.00 0.23 -5.70 16 7 C 0.54 7.90 7.81 -10.99 -0.09 7.82 16 8 O -0.53 -10.50 15.53 5.56 0.09 -10.41 16 9 N -0.71 -9.16 5.08 -53.80 -0.27 -9.43 16 10 C 0.16 2.59 2.43 -67.93 -0.16 2.43 16 11 H 0.11 2.30 7.36 -51.93 -0.38 1.92 16 12 C -0.16 -2.21 9.29 37.16 0.35 -1.86 16 13 C -0.14 -2.25 3.73 -89.97 -0.34 -2.59 16 14 C 0.13 2.44 8.08 -8.52 -0.07 2.38 16 15 N -0.63 -15.27 3.49 -184.63 -0.64 -15.91 16 16 C -0.30 -8.93 11.08 -15.06 -0.17 -9.10 16 17 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 18 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 19 N -0.93 -30.29 13.70 55.49 0.76 -29.53 16 20 Si 1.07 27.62 25.16 -169.99 -4.28 23.35 16 21 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.29 -7.33 6.51 56.52 0.37 -6.96 16 23 H -0.29 -6.81 6.20 56.52 0.35 -6.46 16 24 C 0.10 2.01 5.24 -8.38 -0.04 1.97 16 25 H 0.07 0.43 8.04 -51.93 -0.42 0.01 16 26 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.16 7.73 -51.93 -0.40 -0.25 16 28 H 0.42 2.00 8.92 -34.47 -0.31 1.69 16 29 H 0.16 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.16 0.86 7.77 -51.92 -0.40 0.46 16 31 H 0.40 3.47 8.60 -40.82 -0.35 3.12 16 32 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.91 6.43 -51.93 -0.33 0.57 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.26 8.35 8.73 -40.82 -0.36 7.99 16 39 H 0.05 0.90 7.66 -51.93 -0.40 0.50 16 40 H 0.05 1.16 4.71 -51.93 -0.24 0.91 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -41.92 339.32 -7.39 -49.31 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.77 Total: 0.51 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 0.28 Total: -4.42 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.26 Total: -62.58 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -1.97 Total: -42.13 kcal Atomic # 14 Polarization: 27.62 SS G_CDS: -4.28 Total: 23.35 kcal Atomic # 16 Polarization: 31.35 SS G_CDS: -0.49 Total: 30.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -41.92 -7.39 -49.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675364569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.205 kcal (2) G-P(sol) polarization free energy of solvation -41.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds