Wall clock time and date at job start Fri Apr 10 2020 14:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65597 * 120.00422 * 2 1 4 4 O 1.42101 * 104.27731 * 308.92460 * 3 2 1 5 5 O 1.42101 * 104.27875 * 181.07051 * 3 2 1 6 6 C 1.81399 * 104.45063 * 64.99762 * 3 2 1 7 7 C 1.50694 * 109.46995 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00666 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99858 * 179.97438 * 7 6 3 10 10 C 1.46500 * 119.99869 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47194 * 35.00352 * 10 9 7 12 12 C 1.52999 * 109.47087 * 274.99848 * 10 9 7 13 13 C 1.53003 * 109.47163 * 155.00347 * 10 9 7 14 14 C 1.53486 * 114.20850 * 180.02562 * 13 10 9 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 10 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 H 1.09005 * 109.46923 * 60.00067 * 1 2 3 26 26 H 1.08994 * 109.47495 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47083 * 300.00762 * 1 2 3 28 28 H 0.97008 * 120.00034 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46748 * 60.00241 * 6 3 2 30 30 H 1.08998 * 109.47168 * 300.00169 * 6 3 2 31 31 H 0.96997 * 119.99750 * 0.02562 * 9 7 6 32 32 H 1.09004 * 109.47074 * 180.02562 * 12 10 9 33 33 H 1.08994 * 109.47561 * 300.00057 * 12 10 9 34 34 H 1.09000 * 109.46986 * 60.00526 * 12 10 9 35 35 H 1.08998 * 113.41116 * 46.79441 * 13 10 9 36 36 H 1.09003 * 113.46770 * 332.73878 * 14 13 10 37 37 H 1.09004 * 113.52153 * 202.31032 * 14 13 10 38 38 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 39 39 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 40 40 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7190 2.1702 -1.0714 5 8 3.6607 1.0490 -0.0257 6 6 1.8765 2.1973 1.5920 7 6 2.5794 3.5249 1.7118 8 8 3.2909 3.9178 0.8116 9 7 2.4165 4.2762 2.8188 10 6 3.0994 5.5671 2.9350 11 1 3.1502 6.0408 1.9546 12 6 4.5161 5.3483 3.4699 13 6 2.3246 6.4692 3.8978 14 6 2.9483 7.8570 4.0997 15 7 2.1831 8.3139 2.9298 16 6 2.3277 9.2846 1.9748 17 1 3.2431 9.8550 1.9190 18 6 1.2979 9.5355 1.0786 19 7 1.3910 10.5400 0.2333 20 14 -0.2205 8.4472 1.0722 21 1 -1.2168 8.9933 0.1160 22 1 0.1582 7.0716 0.6608 23 1 -0.8098 8.4118 2.4348 24 6 1.1910 7.2738 3.2408 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.9500 -0.8401 0.0004 29 1 2.1958 1.5430 2.4032 30 1 0.7988 2.3497 1.6509 31 1 1.8471 3.9622 3.5386 32 1 5.0240 6.3088 3.5567 33 1 4.4653 4.8746 4.4502 34 1 5.0681 4.7057 2.7840 35 1 2.0367 5.9693 4.8226 36 1 4.0274 7.8744 3.9463 37 1 2.6472 8.3381 5.0303 38 1 2.1433 11.1501 0.2860 39 1 0.4259 7.6004 3.9450 40 1 0.7729 6.7943 2.3556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675364569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:14 Heat of formation + Delta-G solvation = -78.981963 kcal Electronic energy + Delta-G solvation = -23913.926984 eV Core-core repulsion = 20277.879003 eV Total energy + Delta-G solvation = -3636.047981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41466 -40.16930 -38.27457 -37.09568 -36.41342 -35.86852 -34.57169 -32.77323 -30.61939 -29.58248 -26.99968 -26.79063 -25.37859 -23.45142 -21.97451 -20.95693 -20.34232 -19.49444 -19.07380 -18.14970 -17.99821 -17.50009 -17.08273 -16.96731 -16.61945 -15.92798 -15.75412 -15.58797 -15.19977 -14.86905 -14.68841 -14.55858 -13.98498 -13.75720 -13.56450 -13.42828 -13.25923 -13.18403 -13.16802 -12.84429 -12.71267 -12.51335 -12.26869 -12.19576 -12.05840 -11.72604 -11.47730 -11.25212 -11.06099 -10.88534 -10.50870 -10.28587 -9.20053 -8.62240 -5.46661 -0.93574 1.28084 1.30090 1.44405 1.62006 1.65827 2.01689 2.52342 2.80107 3.03309 3.16492 3.20203 3.29263 3.50843 3.74655 3.93437 4.19221 4.25769 4.31300 4.35567 4.52488 4.60096 4.67167 4.70078 4.72166 4.76531 4.85268 4.92081 5.05260 5.06513 5.18524 5.25484 5.31907 5.52660 5.95642 6.11788 6.27472 6.70389 7.03554 7.33614 8.28368 8.89789 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.004358 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.190461 B = 6423.229848 C = 7185.293374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -1.109 6.109 3 S 2.641 3.359 4 O -0.995 6.995 5 O -0.989 6.989 6 C -0.650 4.650 7 C 0.523 3.477 8 O -0.594 6.594 9 N -0.689 5.689 10 C 0.159 3.841 11 H 0.043 0.957 12 C -0.151 4.151 13 C -0.105 4.105 14 C 0.125 3.875 15 N -0.665 5.665 16 C -0.285 4.285 17 H 0.047 0.953 18 C -0.091 4.091 19 N -0.976 5.976 20 Si 1.108 2.892 21 H -0.307 1.307 22 H -0.287 1.287 23 H -0.244 1.244 24 C 0.086 3.914 25 H 0.052 0.948 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.429 0.571 29 H 0.216 0.784 30 H 0.204 0.796 31 H 0.427 0.573 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.144 0.856 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.245 0.755 39 H 0.070 0.930 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 -28.348 13.664 31.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.873 5.873 3 S 2.731 3.269 4 O -0.985 6.985 5 O -0.979 6.979 6 C -0.781 4.781 7 C 0.308 3.692 8 O -0.476 6.476 9 N -0.341 5.341 10 C 0.054 3.946 11 H 0.062 0.938 12 C -0.209 4.209 13 C -0.124 4.124 14 C 0.000 4.000 15 N -0.395 5.395 16 C -0.413 4.413 17 H 0.064 0.936 18 C -0.282 4.282 19 N -0.622 5.622 20 Si 0.934 3.066 21 H -0.235 1.235 22 H -0.215 1.215 23 H -0.168 1.168 24 C -0.039 4.039 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.265 0.735 29 H 0.233 0.767 30 H 0.221 0.779 31 H 0.267 0.733 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.162 0.838 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.198 -27.681 11.444 30.401 hybrid contribution 1.534 0.888 0.839 1.961 sum -3.664 -26.793 12.284 29.702 Atomic orbital electron populations 1.21916 0.76930 1.06539 1.02898 1.55112 1.16984 1.23368 1.91820 1.03794 0.72808 0.73710 0.76571 1.93555 1.79421 1.73774 1.51715 1.93531 1.35050 1.81943 1.87403 1.30902 1.14735 1.04654 1.27771 1.20000 0.80781 0.85902 0.82469 1.90893 1.41909 1.73839 1.40948 1.45699 1.49398 1.19345 1.19628 1.20561 0.92770 0.82415 0.98872 0.93821 1.22052 0.94292 1.02359 1.02215 1.23004 0.95768 0.94453 0.99185 1.22671 0.96557 0.90843 0.89966 1.46144 1.26199 1.38646 1.28499 1.19996 1.00393 1.11693 1.09240 0.93556 1.27035 1.04343 1.01244 0.95578 1.71007 1.33382 1.16964 1.40865 0.83309 0.72957 0.73095 0.77227 1.23523 1.21518 1.16831 1.23157 0.94233 0.88710 0.97751 0.92950 0.86905 0.89098 0.73459 0.76696 0.77915 0.73315 0.91769 0.88529 0.93909 0.83800 0.93311 0.91429 0.94614 0.91243 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 11.03 127.77 1.41 1.79 16 2 N -1.11 -12.23 6.07 -206.54 -1.25 -13.49 16 3 S 2.64 60.33 4.60 -56.49 -0.26 60.07 16 4 O -1.00 -33.98 17.73 -127.64 -2.26 -36.24 16 5 O -0.99 -30.44 18.08 -127.64 -2.31 -32.75 16 6 C -0.65 -8.61 6.51 71.23 0.46 -8.14 16 7 C 0.52 14.14 7.81 87.65 0.68 14.83 16 8 O -0.59 -24.22 15.53 -3.04 -0.05 -24.26 16 9 N -0.69 -15.01 5.08 -442.52 -2.25 -17.26 16 10 C 0.16 4.74 2.43 44.99 0.11 4.85 16 11 H 0.04 1.90 7.36 -2.39 -0.02 1.89 16 12 C -0.15 -3.83 9.29 71.98 0.67 -3.16 16 13 C -0.10 -2.80 3.73 -10.37 -0.04 -2.83 16 14 C 0.12 4.27 8.08 83.17 0.67 4.94 16 15 N -0.67 -31.82 3.49 -738.03 -2.58 -34.40 16 16 C -0.29 -17.28 11.08 84.03 0.93 -16.35 16 17 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 18 C -0.09 -5.73 5.50 84.86 0.47 -5.26 16 19 N -0.98 -66.61 13.70 21.65 0.30 -66.32 16 20 Si 1.11 56.20 25.16 68.60 1.73 57.92 16 21 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 22 H -0.29 -14.16 6.51 99.48 0.65 -13.52 16 23 H -0.24 -10.46 6.20 99.48 0.62 -9.84 16 24 C 0.09 3.19 5.24 83.26 0.44 3.63 16 25 H 0.05 0.55 8.04 -2.38 -0.02 0.53 16 26 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.09 -0.01 7.73 -2.38 -0.02 -0.03 16 28 H 0.43 3.08 8.92 -96.74 -0.86 2.22 16 29 H 0.22 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.20 0.92 7.77 -2.39 -0.02 0.90 16 31 H 0.43 4.48 8.60 -92.71 -0.80 3.68 16 32 H 0.06 1.73 6.50 -2.39 -0.02 1.72 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 1.68 6.43 -2.39 -0.02 1.66 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.24 16.76 8.73 -92.71 -0.81 15.95 16 39 H 0.07 2.32 7.66 -2.39 -0.02 2.30 16 40 H 0.04 1.53 4.71 -2.39 -0.01 1.52 16 Total: -1.00 -104.43 339.32 -3.90 -108.33 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -0.77 Total: 4.10 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 5.80 Total: -5.71 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -5.78 Total: -131.47 kcal Atomic # 8 Polarization: -88.64 SS G_CDS: -4.62 Total: -93.25 kcal Atomic # 14 Polarization: 56.20 SS G_CDS: 1.73 Total: 57.92 kcal Atomic # 16 Polarization: 60.33 SS G_CDS: -0.26 Total: 60.07 kcal Total: -104.43 -3.90 -108.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675364569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.351 kcal (2) G-P(sol) polarization free energy of solvation -104.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds