Wall clock time and date at job start Fri Apr 10 2020 14:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42096 * 110.54188 * 2 1 4 4 O 1.42098 * 110.54443 * 223.24706 * 2 1 3 5 5 N 1.65601 * 104.44761 * 111.62508 * 2 1 3 6 6 C 1.46498 * 120.00177 * 64.99933 * 5 2 1 7 7 H 1.09003 * 109.50272 * 334.92336 * 6 5 2 8 8 C 1.53114 * 109.50609 * 95.00278 * 6 5 2 9 9 C 1.53113 * 109.16355 * 177.59749 * 8 6 5 10 10 C 1.53041 * 109.27586 * 302.34037 * 9 8 6 11 11 N 1.46846 * 109.52267 * 59.18484 * 10 9 8 12 12 C 1.46899 * 111.00302 * 174.16053 * 11 10 9 13 13 C 1.50698 * 109.46987 * 66.03980 * 12 11 10 14 14 O 1.21293 * 120.00006 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99538 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99773 * 179.72591 * 15 13 12 17 17 H 1.08002 * 119.99671 * 0.27660 * 16 15 13 18 18 C 1.38950 * 120.00030 * 180.27703 * 16 15 13 19 19 N 1.31414 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99969 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47234 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47403 * 120.00325 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00122 * 20 18 16 24 24 C 1.46854 * 111.19543 * 298.25724 * 11 10 9 25 25 H 1.08992 * 109.47473 * 308.37878 * 1 2 3 26 26 H 1.09001 * 109.46455 * 68.37685 * 1 2 3 27 27 H 1.09001 * 109.46788 * 188.37170 * 1 2 3 28 28 H 0.97003 * 120.00076 * 245.00372 * 5 2 1 29 29 H 1.08998 * 109.52214 * 57.68447 * 8 6 5 30 30 H 1.09001 * 109.57014 * 297.53595 * 8 6 5 31 31 H 1.09007 * 109.50157 * 182.40520 * 9 8 6 32 32 H 1.08998 * 109.50916 * 62.28349 * 9 8 6 33 33 H 1.09000 * 109.46464 * 299.16575 * 10 9 8 34 34 H 1.09003 * 109.44833 * 179.19155 * 10 9 8 35 35 H 1.09003 * 109.46477 * 306.04469 * 12 11 10 36 36 H 1.08993 * 109.47002 * 186.04796 * 12 11 10 37 37 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 38 38 H 0.96999 * 119.99863 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.45967 * 181.76139 * 24 11 10 40 40 H 1.09007 * 109.45768 * 301.72741 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4908 6 6 1.8908 -1.9706 1.8508 7 1 1.0335 -2.3010 1.2643 8 6 3.0881 -2.8806 1.5633 9 6 2.7496 -4.3091 1.9979 10 6 2.3831 -4.3117 3.4838 11 7 1.2322 -3.4274 3.7069 12 6 0.7654 -3.5113 5.0972 13 6 1.8246 -2.9602 6.0168 14 8 2.8656 -2.5387 5.5589 15 7 1.6145 -2.9350 7.3478 16 6 2.5804 -2.4389 8.1849 17 1 3.5077 -2.0642 7.7773 18 6 2.3662 -2.4182 9.5577 19 7 1.2381 -2.8745 10.0536 20 14 3.6818 -1.7416 10.6981 21 1 4.8488 -1.2930 9.8966 22 1 3.1331 -0.5907 11.4593 23 1 4.1095 -2.8026 11.6450 24 6 1.5491 -2.0409 3.3409 25 1 -0.3634 0.6380 0.8055 26 1 -0.3632 0.3787 -0.9554 27 1 -0.3633 -1.0167 0.1496 28 1 2.6920 -0.0237 2.1257 29 1 3.9564 -2.5267 2.1192 30 1 3.3089 -2.8672 0.4959 31 1 3.6136 -4.9534 1.8352 32 1 1.9056 -4.6768 1.4143 33 1 3.2322 -3.9570 4.0680 34 1 2.1276 -5.3253 3.7929 35 1 0.5689 -4.5527 5.3522 36 1 -0.1504 -2.9309 5.2086 37 1 0.7818 -3.2718 7.7140 38 1 1.0884 -2.8597 11.0119 39 1 0.6879 -1.4052 3.5465 40 1 2.4022 -1.6969 3.9258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076668882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:39 Heat of formation + Delta-G solvation = -103.263824 kcal Electronic energy + Delta-G solvation = -23927.275671 eV Core-core repulsion = 20290.174749 eV Total energy + Delta-G solvation = -3637.100922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62751 -37.70600 -37.12939 -36.05271 -34.94744 -33.90499 -32.31306 -31.35403 -29.68648 -28.93293 -27.32788 -24.72285 -22.76784 -22.53496 -20.04451 -19.59602 -19.14004 -17.97591 -17.64171 -16.65959 -16.31221 -16.06056 -15.44548 -14.90171 -14.75162 -14.45858 -14.25466 -14.00648 -13.63340 -13.50920 -13.39161 -13.28750 -13.11154 -12.54937 -12.21972 -12.11427 -12.02804 -11.90753 -11.60792 -11.45059 -11.26580 -11.16940 -10.86931 -10.73634 -10.56026 -10.42085 -10.32771 -10.20983 -9.54921 -9.40152 -9.27921 -8.07035 -7.49121 -6.52202 -3.93710 0.14364 2.58620 3.08242 3.20632 3.27150 3.65917 3.74838 4.05383 4.09184 4.29401 4.53392 4.72683 4.84733 4.90758 5.00763 5.11141 5.16254 5.37560 5.40761 5.45504 5.70950 5.76938 5.81937 5.91692 5.96947 6.11536 6.12445 6.18924 6.37207 6.40534 6.55729 6.70376 6.93344 7.28112 7.38682 7.45038 7.94356 8.48355 9.06293 9.41944 9.91952 10.64238 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.003404 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.970212 B = 8223.275308 C = 8744.300904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.616 3.384 3 O -0.965 6.965 4 O -0.957 6.957 5 N -1.112 6.112 6 C 0.161 3.839 7 H 0.082 0.918 8 C -0.136 4.136 9 C -0.110 4.110 10 C 0.038 3.962 11 N -0.512 5.512 12 C 0.042 3.958 13 C 0.404 3.596 14 O -0.594 6.594 15 N -0.555 5.555 16 C -0.303 4.303 17 H 0.103 0.897 18 C 0.025 3.975 19 N -0.897 5.897 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.025 3.975 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.420 0.580 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.393 0.607 38 H 0.272 0.728 39 H 0.067 0.933 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 0.605 -15.770 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.707 3.293 3 O -0.955 6.955 4 O -0.947 6.947 5 N -0.871 5.871 6 C 0.054 3.946 7 H 0.100 0.900 8 C -0.175 4.175 9 C -0.149 4.149 10 C -0.090 4.090 11 N -0.235 5.235 12 C -0.090 4.090 13 C 0.190 3.810 14 O -0.481 6.481 15 N -0.190 5.190 16 C -0.433 4.433 17 H 0.121 0.879 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.104 4.104 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.254 0.746 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.907 0.872 -16.993 17.458 hybrid contribution 0.097 0.477 2.170 2.224 sum -3.811 1.349 -14.823 15.364 Atomic orbital electron populations 1.30548 1.28807 1.11779 1.11332 1.04648 0.77491 0.73720 0.73403 1.93611 1.78032 1.37935 1.85917 1.93613 1.76846 1.61665 1.62543 1.55592 1.73711 1.21496 1.36300 1.20727 0.97151 0.79482 0.97287 0.90018 1.22073 0.98304 0.95040 1.02100 1.21513 1.01067 0.96152 0.96157 1.22293 0.94106 0.96452 0.96168 1.62386 1.34239 1.07481 1.19405 1.22038 0.97488 1.02304 0.87153 1.21093 0.89957 0.86192 0.83769 1.90388 1.29056 1.53559 1.75114 1.42073 1.18283 1.53677 1.04945 1.19765 0.98725 1.37456 0.87332 0.87884 1.25293 0.97529 0.97303 0.97633 1.69615 1.24137 1.46013 1.14026 0.85808 0.80439 0.78441 0.79709 1.19222 1.20668 1.20658 1.22673 1.03234 0.90488 0.93981 0.85188 0.85622 0.85279 0.74551 0.91246 0.90710 0.91491 0.91625 0.91199 0.91584 0.89187 0.89299 0.77367 0.91761 0.91450 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -4.34 10.78 101.05 1.09 -3.25 16 2 S 2.62 25.99 6.02 -107.50 -0.65 25.34 16 3 O -0.96 -12.84 18.08 -57.54 -1.04 -13.88 16 4 O -0.96 -12.48 17.16 -57.54 -0.99 -13.46 16 5 N -1.11 -11.79 5.37 -4.82 -0.03 -11.81 16 6 C 0.16 1.93 2.72 -67.85 -0.18 1.74 16 7 H 0.08 0.83 7.15 -51.93 -0.37 0.46 16 8 C -0.14 -1.76 5.61 -26.61 -0.15 -1.91 16 9 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 10 C 0.04 0.56 5.09 -3.83 -0.02 0.55 16 11 N -0.51 -7.65 4.86 -236.10 -1.15 -8.79 16 12 C 0.04 0.68 5.86 -4.98 -0.03 0.65 16 13 C 0.40 8.67 7.20 -10.99 -0.08 8.60 16 14 O -0.59 -14.23 11.20 5.55 0.06 -14.17 16 15 N -0.55 -13.23 5.29 -10.96 -0.06 -13.29 16 16 C -0.30 -8.07 9.68 -14.93 -0.14 -8.22 16 17 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 18 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 19 N -0.90 -23.60 13.05 55.50 0.72 -22.88 16 20 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.03 0.37 4.50 -3.83 -0.02 0.35 16 25 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.13 0.62 8.14 -51.92 -0.42 0.19 16 27 H 0.13 0.72 7.44 -51.92 -0.39 0.33 16 28 H 0.42 4.35 8.80 -34.47 -0.30 4.05 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.29 6.00 -51.93 -0.31 0.98 16 34 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 35 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.39 9.03 7.90 -40.82 -0.32 8.70 16 38 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 40 H 0.09 1.71 5.36 -51.93 -0.28 1.43 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -33.32 333.63 -8.58 -41.89 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.67 Total: 13.10 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 0.21 Total: -2.48 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.51 Total: -56.77 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.97 Total: -41.51 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 25.99 SS G_CDS: -0.65 Total: 25.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.32 -8.58 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076668882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.369 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds