Wall clock time and date at job start Fri Apr 10 2020 14:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42096 * 110.54188 * 2 1 4 4 O 1.42098 * 110.54443 * 223.24706 * 2 1 3 5 5 N 1.65601 * 104.44761 * 111.62508 * 2 1 3 6 6 C 1.46498 * 120.00177 * 64.99933 * 5 2 1 7 7 H 1.09003 * 109.50272 * 334.92336 * 6 5 2 8 8 C 1.53114 * 109.50609 * 95.00278 * 6 5 2 9 9 C 1.53113 * 109.16355 * 177.59749 * 8 6 5 10 10 C 1.53041 * 109.27586 * 302.34037 * 9 8 6 11 11 N 1.46846 * 109.52267 * 59.18484 * 10 9 8 12 12 C 1.46899 * 111.00302 * 174.16053 * 11 10 9 13 13 C 1.50698 * 109.46987 * 66.03980 * 12 11 10 14 14 O 1.21293 * 120.00006 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99538 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99773 * 179.72591 * 15 13 12 17 17 H 1.08002 * 119.99671 * 0.27660 * 16 15 13 18 18 C 1.38950 * 120.00030 * 180.27703 * 16 15 13 19 19 N 1.31414 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99969 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47234 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47403 * 120.00325 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00122 * 20 18 16 24 24 C 1.46854 * 111.19543 * 298.25724 * 11 10 9 25 25 H 1.08992 * 109.47473 * 308.37878 * 1 2 3 26 26 H 1.09001 * 109.46455 * 68.37685 * 1 2 3 27 27 H 1.09001 * 109.46788 * 188.37170 * 1 2 3 28 28 H 0.97003 * 120.00076 * 245.00372 * 5 2 1 29 29 H 1.08998 * 109.52214 * 57.68447 * 8 6 5 30 30 H 1.09001 * 109.57014 * 297.53595 * 8 6 5 31 31 H 1.09007 * 109.50157 * 182.40520 * 9 8 6 32 32 H 1.08998 * 109.50916 * 62.28349 * 9 8 6 33 33 H 1.09000 * 109.46464 * 299.16575 * 10 9 8 34 34 H 1.09003 * 109.44833 * 179.19155 * 10 9 8 35 35 H 1.09003 * 109.46477 * 306.04469 * 12 11 10 36 36 H 1.08993 * 109.47002 * 186.04796 * 12 11 10 37 37 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 38 38 H 0.96999 * 119.99863 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.45967 * 181.76139 * 24 11 10 40 40 H 1.09007 * 109.45768 * 301.72741 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4908 6 6 1.8908 -1.9706 1.8508 7 1 1.0335 -2.3010 1.2643 8 6 3.0881 -2.8806 1.5633 9 6 2.7496 -4.3091 1.9979 10 6 2.3831 -4.3117 3.4838 11 7 1.2322 -3.4274 3.7069 12 6 0.7654 -3.5113 5.0972 13 6 1.8246 -2.9602 6.0168 14 8 2.8656 -2.5387 5.5589 15 7 1.6145 -2.9350 7.3478 16 6 2.5804 -2.4389 8.1849 17 1 3.5077 -2.0642 7.7773 18 6 2.3662 -2.4182 9.5577 19 7 1.2381 -2.8745 10.0536 20 14 3.6818 -1.7416 10.6981 21 1 4.8488 -1.2930 9.8966 22 1 3.1331 -0.5907 11.4593 23 1 4.1095 -2.8026 11.6450 24 6 1.5491 -2.0409 3.3409 25 1 -0.3634 0.6380 0.8055 26 1 -0.3632 0.3787 -0.9554 27 1 -0.3633 -1.0167 0.1496 28 1 2.6920 -0.0237 2.1257 29 1 3.9564 -2.5267 2.1192 30 1 3.3089 -2.8672 0.4959 31 1 3.6136 -4.9534 1.8352 32 1 1.9056 -4.6768 1.4143 33 1 3.2322 -3.9570 4.0680 34 1 2.1276 -5.3253 3.7929 35 1 0.5689 -4.5527 5.3522 36 1 -0.1504 -2.9309 5.2086 37 1 0.7818 -3.2718 7.7140 38 1 1.0884 -2.8597 11.0119 39 1 0.6879 -1.4052 3.5465 40 1 2.4022 -1.6969 3.9258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076668882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:38 Heat of formation + Delta-G solvation = -132.480688 kcal Electronic energy + Delta-G solvation = -23928.542609 eV Core-core repulsion = 20290.174749 eV Total energy + Delta-G solvation = -3638.367860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03594 -39.12874 -38.07578 -36.96477 -36.28261 -35.54031 -33.51938 -33.20171 -30.24252 -30.01660 -28.76792 -26.47946 -23.98282 -23.66200 -21.25743 -20.94550 -20.27972 -19.76773 -18.57190 -17.80531 -17.54422 -17.12624 -16.75285 -16.32164 -16.10146 -15.74397 -15.62662 -15.53799 -14.96609 -14.59570 -14.47967 -13.98104 -13.90295 -13.78096 -13.46802 -13.26062 -13.13809 -13.09796 -13.03110 -12.98078 -12.51545 -12.42555 -12.18785 -12.12214 -12.01585 -11.76540 -11.72080 -11.38677 -11.24576 -10.92108 -10.31673 -9.98193 -8.98544 -8.46633 -5.96045 -0.61556 1.33695 1.40237 1.53014 1.76830 2.03083 2.28046 2.89226 3.10123 3.19847 3.28628 3.33672 3.79169 3.91526 4.04438 4.14063 4.20599 4.26823 4.40625 4.44397 4.57360 4.62071 4.72086 4.73267 4.86630 4.99546 5.02847 5.12874 5.19327 5.30182 5.33912 5.40480 5.55839 5.90636 6.01896 6.09456 6.16945 6.59318 7.12356 7.56484 8.11513 8.68693 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.003404 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.970212 B = 8223.275308 C = 8744.300904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.623 3.377 3 O -1.004 7.004 4 O -0.992 6.992 5 N -1.115 6.115 6 C 0.166 3.834 7 H 0.113 0.887 8 C -0.138 4.138 9 C -0.104 4.104 10 C 0.038 3.962 11 N -0.496 5.496 12 C 0.050 3.950 13 C 0.407 3.593 14 O -0.620 6.620 15 N -0.570 5.570 16 C -0.331 4.331 17 H 0.076 0.924 18 C -0.011 4.011 19 N -0.918 5.918 20 Si 0.988 3.012 21 H -0.276 1.276 22 H -0.271 1.271 23 H -0.272 1.272 24 C 0.027 3.973 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.418 0.582 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.082 0.918 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 0.199 -16.784 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.719 3.281 3 O -0.995 6.995 4 O -0.982 6.982 5 N -0.872 5.872 6 C 0.058 3.942 7 H 0.131 0.869 8 C -0.178 4.178 9 C -0.142 4.142 10 C -0.090 4.090 11 N -0.219 5.219 12 C -0.082 4.082 13 C 0.194 3.806 14 O -0.508 6.508 15 N -0.207 5.207 16 C -0.461 4.461 17 H 0.094 0.906 18 C -0.211 4.211 19 N -0.559 5.559 20 Si 0.812 3.188 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.103 4.103 25 H 0.165 0.835 26 H 0.166 0.834 27 H 0.167 0.833 28 H 0.252 0.748 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.988 0.459 -18.024 18.998 hybrid contribution 0.728 0.605 2.378 2.559 sum -5.260 1.064 -15.647 16.541 Atomic orbital electron populations 1.30333 1.23113 1.13732 1.13437 1.04271 0.79298 0.72187 0.72335 1.93560 1.80179 1.39554 1.86181 1.93564 1.79039 1.62198 1.63423 1.55535 1.74344 1.21085 1.36244 1.20687 0.97656 0.79948 0.95875 0.86947 1.22092 0.98071 0.95779 1.01822 1.21495 1.02293 0.96023 0.94401 1.22294 0.92585 0.96734 0.97433 1.62495 1.33758 1.07632 1.18005 1.22165 0.96284 1.03524 0.86238 1.22237 0.90559 0.84242 0.83568 1.90416 1.30772 1.53999 1.75605 1.42143 1.18078 1.54877 1.05621 1.19652 0.98863 1.39088 0.88484 0.90557 1.25966 0.99404 0.97325 0.98367 1.69666 1.25138 1.46564 1.14526 0.84944 0.77853 0.78184 0.77801 1.20056 1.19672 1.19721 1.22634 1.02147 0.90279 0.95236 0.83545 0.83363 0.83312 0.74797 0.93711 0.90351 0.90638 0.89408 0.95403 0.90464 0.87084 0.86761 0.76999 0.91329 0.89951 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.69 10.78 113.37 1.22 -4.47 16 2 S 2.62 48.58 6.02 -56.49 -0.34 48.24 16 3 O -1.00 -26.50 18.08 -127.65 -2.31 -28.80 16 4 O -0.99 -24.83 17.16 -127.65 -2.19 -27.02 16 5 N -1.11 -22.78 5.37 -169.18 -0.91 -23.69 16 6 C 0.17 3.70 2.72 45.04 0.12 3.82 16 7 H 0.11 1.84 7.15 -2.39 -0.02 1.83 16 8 C -0.14 -3.49 5.61 30.67 0.17 -3.32 16 9 C -0.10 -2.42 6.09 30.65 0.19 -2.23 16 10 C 0.04 1.09 5.09 86.33 0.44 1.53 16 11 N -0.50 -13.87 4.86 -900.90 -4.38 -18.25 16 12 C 0.05 1.52 5.86 85.56 0.50 2.02 16 13 C 0.41 17.62 7.20 87.66 0.63 18.25 16 14 O -0.62 -30.82 11.20 -3.07 -0.03 -30.85 16 15 N -0.57 -27.66 5.29 -306.98 -1.62 -29.28 16 16 C -0.33 -18.14 9.68 84.04 0.81 -17.33 16 17 H 0.08 4.51 7.16 -2.91 -0.02 4.48 16 18 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 19 N -0.92 -48.28 13.05 21.66 0.28 -48.00 16 20 Si 0.99 42.23 29.55 68.60 2.03 44.25 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 C 0.03 0.74 4.50 86.32 0.39 1.13 16 25 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.15 0.86 7.44 -2.39 -0.02 0.84 16 28 H 0.42 8.88 8.80 -96.74 -0.85 8.02 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.94 7.48 -2.39 -0.02 1.92 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 1.06 6.00 -2.39 -0.01 1.04 16 34 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 35 H 0.11 2.99 8.06 -2.39 -0.02 2.97 16 36 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 38 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 39 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 40 H 0.05 2.01 5.36 -2.38 -0.01 1.99 16 Total: -1.00 -74.33 333.63 -5.03 -79.37 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.51 Total: 34.71 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.94 Total: -0.68 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -6.62 Total: -119.22 kcal Atomic # 8 Polarization: -82.14 SS G_CDS: -4.53 Total: -86.67 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 48.58 SS G_CDS: -0.34 Total: 48.24 kcal Total: -74.33 -5.03 -79.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076668882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.114 kcal (2) G-P(sol) polarization free energy of solvation -74.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds