Wall clock time and date at job start Fri Apr 10 2020 14:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99861 * 2 1 4 4 O 1.20831 * 120.00114 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00184 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47417 * 180.02562 * 5 3 2 7 7 C 1.36687 * 119.99699 * 264.52848 * 6 5 3 8 8 H 1.07997 * 119.99848 * 132.27666 * 7 6 5 9 9 C 1.39173 * 119.99807 * 312.27718 * 7 6 5 10 10 N 1.31274 * 120.00326 * 3.06639 * 9 7 6 11 11 Si 1.86799 * 119.99737 * 183.07083 * 9 7 6 12 12 H 1.48502 * 109.47409 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47414 * 119.99768 * 11 9 7 14 14 H 1.48500 * 109.47076 * 239.99805 * 11 9 7 15 15 C 1.34774 * 119.99866 * 84.52497 * 6 5 3 16 16 O 1.21540 * 120.00447 * 4.96403 * 15 6 5 17 17 C 1.48244 * 119.99699 * 184.96025 * 15 6 5 18 18 C 1.39668 * 120.55710 * 174.28930 * 17 15 6 19 19 C 1.38674 * 118.25614 * 180.02562 * 18 17 15 20 20 N 1.32255 * 119.16225 * 359.72968 * 19 18 17 21 21 C 1.31886 * 121.05699 * 0.55245 * 20 19 18 22 22 C 1.50705 * 119.03786 * 179.71589 * 21 20 19 23 23 C 1.52998 * 117.49902 * 59.72666 * 22 21 20 24 24 C 1.53009 * 60.03148 * 252.47586 * 23 22 21 25 25 N 1.31571 * 121.92389 * 359.43125 * 21 20 19 26 26 H 1.08997 * 109.47126 * 59.99647 * 1 2 3 27 27 H 1.08996 * 109.46800 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46699 * 299.99291 * 1 2 3 29 29 H 1.09002 * 109.46896 * 60.00185 * 5 3 2 30 30 H 1.09003 * 109.46798 * 300.00311 * 5 3 2 31 31 H 0.96997 * 119.99670 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.87330 * 0.04586 * 18 17 15 33 33 H 1.08002 * 120.41753 * 180.02562 * 19 18 17 34 34 H 1.08996 * 115.54545 * 205.39774 * 22 21 20 35 35 H 1.09001 * 117.49816 * 359.97438 * 23 22 21 36 36 H 1.09002 * 117.49559 * 144.97834 * 23 22 21 37 37 H 1.08993 * 117.49521 * 107.49886 * 24 23 22 38 38 H 1.08997 * 117.49746 * 252.52312 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9818 2.6798 0.0002 7 6 4.2833 3.3039 -1.1780 8 1 3.8676 4.2766 -1.3955 9 6 5.1259 2.6857 -2.0971 10 7 5.5829 1.4782 -1.8599 11 14 5.6066 3.5745 -3.6682 12 1 4.9637 4.9128 -3.6965 13 1 7.0823 3.7338 -3.7152 14 1 5.1565 2.7837 -4.8418 15 6 4.0665 3.3568 1.1624 16 8 3.8864 2.7794 2.2167 17 6 4.3794 4.8058 1.1550 18 6 4.3536 5.5439 2.3404 19 6 4.6537 6.8964 2.2784 20 7 4.9571 7.4362 1.1097 21 6 4.9672 6.7118 0.0077 22 6 5.3132 7.3751 -1.3006 23 6 6.6889 8.0348 -1.4161 24 6 5.4321 8.9012 -1.3105 25 7 4.6895 5.4258 0.0179 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.9558 0.7810 -0.8909 30 1 3.9565 0.7806 0.8892 31 1 6.1705 1.0476 -2.5004 32 1 4.1066 5.0737 3.2808 33 1 4.6445 7.5002 3.1738 34 1 4.9083 6.8961 -2.1920 35 1 7.3434 7.9894 -0.5457 36 1 7.1891 7.9895 -2.3835 37 1 5.2601 9.4257 -0.3707 38 1 5.1055 9.4255 -2.2085 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348797091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:10 Heat of formation + Delta-G solvation = -17.128277 kcal Electronic energy + Delta-G solvation = -25375.447090 eV Core-core repulsion = 21606.637335 eV Total energy + Delta-G solvation = -3768.809755 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71054 -39.78554 -38.35532 -36.70038 -35.79360 -34.92529 -33.20094 -31.66604 -31.23418 -28.79356 -26.63369 -25.40742 -24.58279 -23.99942 -22.18064 -21.64455 -20.38688 -19.42697 -17.96239 -17.33557 -16.99844 -16.44750 -15.80845 -15.55916 -15.18934 -15.09603 -14.73227 -14.59266 -14.39751 -14.04941 -13.54437 -13.45211 -12.93430 -12.78557 -12.62182 -11.94498 -11.73408 -11.43081 -11.37286 -11.28169 -11.18845 -10.83115 -10.62569 -10.44972 -10.30925 -10.26868 -10.19279 -10.11670 -9.74573 -9.27985 -9.22985 -8.85677 -8.37577 -7.60291 -6.46398 -4.19699 1.12512 1.46499 3.02727 3.11599 3.16101 3.21322 3.25904 3.61898 4.01140 4.05180 4.16021 4.34432 4.51579 4.64433 4.97697 5.09484 5.22362 5.26475 5.39699 5.43321 5.49432 5.49672 5.60190 5.62201 5.78611 5.88106 5.89117 6.03052 6.17198 6.28571 6.33788 6.44714 6.79672 6.81272 6.98932 7.44756 7.53540 7.65795 8.37543 8.51589 8.60792 8.95234 9.16891 9.61664 10.56847 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.006045 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.740534 B = 4631.019960 C = 5957.208974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.447 3.553 4 O -0.509 6.509 5 C 0.114 3.886 6 N -0.394 5.394 7 C -0.295 4.295 8 H 0.119 0.881 9 C 0.040 3.960 10 N -0.879 5.879 11 Si 0.928 3.072 12 H -0.262 1.262 13 H -0.279 1.279 14 H -0.283 1.283 15 C 0.522 3.478 16 O -0.589 6.589 17 C 0.169 3.831 18 C -0.194 4.194 19 C 0.135 3.865 20 N -0.523 5.523 21 C 0.327 3.673 22 C -0.094 4.094 23 C -0.158 4.158 24 C -0.157 4.157 25 N -0.437 5.437 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.161 0.839 30 H 0.101 0.899 31 H 0.274 0.726 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 5.662 0.728 5.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.289 3.711 4 O -0.396 6.396 5 C -0.011 4.011 6 N -0.110 5.110 7 C -0.424 4.424 8 H 0.136 0.864 9 C -0.164 4.164 10 N -0.517 5.517 11 Si 0.754 3.246 12 H -0.185 1.185 13 H -0.204 1.204 14 H -0.209 1.209 15 C 0.310 3.690 16 O -0.473 6.473 17 C 0.021 3.979 18 C -0.217 4.217 19 C -0.031 4.031 20 N -0.239 5.239 21 C 0.060 3.940 22 C -0.114 4.114 23 C -0.196 4.196 24 C -0.195 4.195 25 N -0.152 5.152 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.178 0.822 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.168 0.832 33 H 0.183 0.817 34 H 0.147 0.853 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.522 5.896 0.288 6.096 hybrid contribution -0.217 -0.154 0.054 0.272 sum -1.739 5.741 0.342 6.009 Atomic orbital electron populations 1.23098 0.78072 1.02654 1.01976 1.86549 1.22209 1.34676 1.84881 1.25292 0.93551 0.80869 0.71368 1.90583 1.67137 1.36455 1.45412 1.21393 0.84020 0.87544 1.08160 1.42977 1.53640 1.08446 1.05959 1.20169 1.25335 1.03514 0.93409 0.86429 1.25628 0.94902 0.95705 1.00185 1.69500 1.32291 1.12954 1.37000 0.85836 0.78598 0.79978 0.80173 1.18548 1.20450 1.20900 1.17962 0.81709 0.85092 0.84192 1.90643 1.56773 1.68666 1.31258 1.21696 0.92166 0.95498 0.88574 1.22861 1.02148 0.95893 1.00776 1.23014 0.92186 0.92238 0.95654 1.67907 1.15704 1.41039 0.99228 1.22335 0.91962 0.87203 0.92518 1.20633 1.02271 0.94734 0.93754 1.22935 0.90316 1.03111 1.03253 1.22988 1.01123 0.91649 1.03739 1.69272 1.09277 1.08478 1.28213 0.92464 0.88851 0.92553 0.82221 0.88124 0.91572 0.83155 0.81726 0.85269 0.88709 0.88266 0.87428 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.08 10.57 -39.25 -0.41 -7.49 16 3 C 0.45 10.18 7.99 36.01 0.29 10.47 16 4 O -0.51 -12.80 16.06 -18.75 -0.30 -13.10 16 5 C 0.11 2.69 5.48 -5.19 -0.03 2.66 16 6 N -0.39 -10.09 2.04 -117.04 -0.24 -10.33 16 7 C -0.29 -7.54 7.52 -15.04 -0.11 -7.65 16 8 H 0.12 3.06 5.96 -52.49 -0.31 2.75 16 9 C 0.04 0.99 5.35 -17.44 -0.09 0.90 16 10 N -0.88 -22.16 10.97 55.51 0.61 -21.55 16 11 Si 0.93 19.60 29.55 -169.99 -5.02 14.58 16 12 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 13 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 15 C 0.52 13.24 7.43 -12.15 -0.09 13.15 16 16 O -0.59 -15.45 16.08 5.33 0.09 -15.37 16 17 C 0.17 3.82 6.69 -82.64 -0.55 3.26 16 18 C -0.19 -3.58 9.72 -38.89 -0.38 -3.96 16 19 C 0.13 2.13 11.30 -17.21 -0.19 1.93 16 20 N -0.52 -9.08 9.33 -10.75 -0.10 -9.18 16 21 C 0.33 6.26 7.31 -157.30 -1.15 5.11 16 22 C -0.09 -1.53 6.23 -91.73 -0.57 -2.10 16 23 C -0.16 -2.13 10.23 -26.73 -0.27 -2.40 16 24 C -0.16 -2.01 10.01 -26.69 -0.27 -2.28 16 25 N -0.44 -9.69 6.45 -7.33 -0.05 -9.73 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.16 3.87 5.50 -51.93 -0.29 3.59 16 30 H 0.10 2.33 7.52 -51.93 -0.39 1.94 16 31 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.15 2.56 7.75 -52.49 -0.41 2.16 16 33 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 34 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.11 1.40 7.54 -51.93 -0.39 1.01 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -30.90 335.81 -7.03 -37.93 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -4.30 Total: 8.48 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: -2.36 Total: 20.70 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.22 Total: -50.79 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.63 Total: -35.96 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.90 -7.03 -37.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348797091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.802 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds