Wall clock time and date at job start Fri Apr 10 2020 14:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99861 * 2 1 4 4 O 1.20831 * 120.00114 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00184 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47417 * 180.02562 * 5 3 2 7 7 C 1.36687 * 119.99699 * 264.52848 * 6 5 3 8 8 H 1.07997 * 119.99848 * 132.27666 * 7 6 5 9 9 C 1.39173 * 119.99807 * 312.27718 * 7 6 5 10 10 N 1.31274 * 120.00326 * 3.06639 * 9 7 6 11 11 Si 1.86799 * 119.99737 * 183.07083 * 9 7 6 12 12 H 1.48502 * 109.47409 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47414 * 119.99768 * 11 9 7 14 14 H 1.48500 * 109.47076 * 239.99805 * 11 9 7 15 15 C 1.34774 * 119.99866 * 84.52497 * 6 5 3 16 16 O 1.21540 * 120.00447 * 4.96403 * 15 6 5 17 17 C 1.48244 * 119.99699 * 184.96025 * 15 6 5 18 18 C 1.39668 * 120.55710 * 174.28930 * 17 15 6 19 19 C 1.38674 * 118.25614 * 180.02562 * 18 17 15 20 20 N 1.32255 * 119.16225 * 359.72968 * 19 18 17 21 21 C 1.31886 * 121.05699 * 0.55245 * 20 19 18 22 22 C 1.50705 * 119.03786 * 179.71589 * 21 20 19 23 23 C 1.52998 * 117.49902 * 59.72666 * 22 21 20 24 24 C 1.53009 * 60.03148 * 252.47586 * 23 22 21 25 25 N 1.31571 * 121.92389 * 359.43125 * 21 20 19 26 26 H 1.08997 * 109.47126 * 59.99647 * 1 2 3 27 27 H 1.08996 * 109.46800 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46699 * 299.99291 * 1 2 3 29 29 H 1.09002 * 109.46896 * 60.00185 * 5 3 2 30 30 H 1.09003 * 109.46798 * 300.00311 * 5 3 2 31 31 H 0.96997 * 119.99670 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.87330 * 0.04586 * 18 17 15 33 33 H 1.08002 * 120.41753 * 180.02562 * 19 18 17 34 34 H 1.08996 * 115.54545 * 205.39774 * 22 21 20 35 35 H 1.09001 * 117.49816 * 359.97438 * 23 22 21 36 36 H 1.09002 * 117.49559 * 144.97834 * 23 22 21 37 37 H 1.08993 * 117.49521 * 107.49886 * 24 23 22 38 38 H 1.08997 * 117.49746 * 252.52312 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9818 2.6798 0.0002 7 6 4.2833 3.3039 -1.1780 8 1 3.8676 4.2766 -1.3955 9 6 5.1259 2.6857 -2.0971 10 7 5.5829 1.4782 -1.8599 11 14 5.6066 3.5745 -3.6682 12 1 4.9637 4.9128 -3.6965 13 1 7.0823 3.7338 -3.7152 14 1 5.1565 2.7837 -4.8418 15 6 4.0665 3.3568 1.1624 16 8 3.8864 2.7794 2.2167 17 6 4.3794 4.8058 1.1550 18 6 4.3536 5.5439 2.3404 19 6 4.6537 6.8964 2.2784 20 7 4.9571 7.4362 1.1097 21 6 4.9672 6.7118 0.0077 22 6 5.3132 7.3751 -1.3006 23 6 6.6889 8.0348 -1.4161 24 6 5.4321 8.9012 -1.3105 25 7 4.6895 5.4258 0.0179 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.9558 0.7810 -0.8909 30 1 3.9565 0.7806 0.8892 31 1 6.1705 1.0476 -2.5004 32 1 4.1066 5.0737 3.2808 33 1 4.6445 7.5002 3.1738 34 1 4.9083 6.8961 -2.1920 35 1 7.3434 7.9894 -0.5457 36 1 7.1891 7.9895 -2.3835 37 1 5.2601 9.4257 -0.3707 38 1 5.1055 9.4255 -2.2085 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348797091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:10 Heat of formation + Delta-G solvation = -34.854715 kcal Electronic energy + Delta-G solvation = -25376.215766 eV Core-core repulsion = 21606.637335 eV Total energy + Delta-G solvation = -3769.578431 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.22636 -41.51512 -40.13486 -37.89502 -37.52208 -36.81205 -34.70825 -33.56351 -32.67728 -30.49722 -28.08339 -27.19506 -25.96994 -25.62305 -23.21846 -23.12765 -21.98136 -21.20830 -19.64845 -18.87739 -18.75947 -18.04738 -17.43747 -17.16673 -16.81750 -16.50653 -16.45013 -16.16648 -16.04124 -15.42576 -15.10146 -14.88282 -14.54794 -14.43379 -14.27932 -13.41512 -13.26679 -13.08369 -12.96155 -12.92141 -12.58653 -12.35756 -12.01295 -11.85900 -11.81386 -11.79988 -11.66857 -11.54299 -11.39670 -11.15723 -11.01209 -10.23375 -10.04605 -9.45293 -8.33418 -6.13958 -0.43514 0.07936 1.20673 1.42808 1.45237 1.53140 1.60296 2.00196 2.32576 2.54055 2.72125 2.86957 3.08875 3.10560 3.34741 3.79605 3.93071 3.95303 4.02419 4.09596 4.19339 4.24108 4.27359 4.30024 4.39605 4.60895 4.62916 4.80021 4.80877 4.91446 4.98665 5.17896 5.29808 5.34105 5.40882 5.63850 5.75226 6.01099 6.46407 6.75989 6.99403 7.13882 7.29871 7.71242 8.70354 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.006045 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.740534 B = 4631.019960 C = 5957.208974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.453 3.547 4 O -0.538 6.538 5 C 0.112 3.888 6 N -0.407 5.407 7 C -0.308 4.308 8 H 0.109 0.891 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.982 3.018 12 H -0.253 1.253 13 H -0.277 1.277 14 H -0.278 1.278 15 C 0.508 3.492 16 O -0.612 6.612 17 C 0.133 3.867 18 C -0.194 4.194 19 C 0.156 3.844 20 N -0.515 5.515 21 C 0.318 3.682 22 C -0.131 4.131 23 C -0.148 4.148 24 C -0.129 4.129 25 N -0.469 5.469 26 H 0.058 0.942 27 H 0.140 0.860 28 H 0.056 0.944 29 H 0.154 0.846 30 H 0.098 0.902 31 H 0.277 0.723 32 H 0.162 0.838 33 H 0.221 0.779 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 7.669 0.535 7.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.297 3.703 4 O -0.428 6.428 5 C -0.013 4.013 6 N -0.123 5.123 7 C -0.437 4.437 8 H 0.126 0.874 9 C -0.198 4.198 10 N -0.542 5.542 11 Si 0.805 3.195 12 H -0.176 1.176 13 H -0.202 1.202 14 H -0.203 1.203 15 C 0.297 3.703 16 O -0.499 6.499 17 C -0.014 4.014 18 C -0.217 4.217 19 C -0.011 4.011 20 N -0.230 5.230 21 C 0.052 3.948 22 C -0.151 4.151 23 C -0.186 4.186 24 C -0.166 4.166 25 N -0.185 5.185 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.075 0.925 29 H 0.171 0.829 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.179 0.821 33 H 0.238 0.762 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.447 7.872 0.076 8.004 hybrid contribution -0.306 -0.767 0.218 0.854 sum -1.754 7.105 0.294 7.325 Atomic orbital electron populations 1.23542 0.75092 1.05787 1.02086 1.86511 1.24987 1.32485 1.84043 1.24971 0.93213 0.81389 0.70776 1.90558 1.67644 1.37590 1.46960 1.21312 0.85142 0.87208 1.07608 1.43162 1.53978 1.08908 1.06217 1.20158 1.26262 1.03466 0.93768 0.87384 1.26333 0.94527 0.96259 1.02680 1.69579 1.32760 1.13816 1.38041 0.85028 0.78215 0.79437 0.76813 1.17592 1.20213 1.20332 1.18550 0.81202 0.86658 0.83869 1.90583 1.57835 1.69677 1.31761 1.21559 0.94770 0.94545 0.90538 1.23077 1.01850 0.97011 0.99748 1.23877 0.89032 0.91353 0.96799 1.68063 1.15253 1.40353 0.99334 1.22850 0.91344 0.86405 0.94217 1.20732 1.05115 0.97117 0.92101 1.23046 0.89575 1.01868 1.04112 1.23092 0.99469 0.89127 1.04952 1.69109 1.10607 1.10172 1.28569 0.92342 0.84192 0.92542 0.82902 0.88400 0.91286 0.82072 0.76238 0.86479 0.89146 0.86348 0.87363 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 1.99 16 2 O -0.36 -14.06 10.57 -51.38 -0.54 -14.61 16 3 C 0.45 21.25 7.99 71.24 0.57 21.82 16 4 O -0.54 -27.88 16.06 21.95 0.35 -27.53 16 5 C 0.11 5.55 5.48 85.64 0.47 6.02 16 6 N -0.41 -21.74 2.04 -642.49 -1.31 -23.05 16 7 C -0.31 -16.31 7.52 84.16 0.63 -15.68 16 8 H 0.11 5.86 5.96 -2.91 -0.02 5.85 16 9 C 0.00 0.18 5.35 85.00 0.45 0.63 16 10 N -0.90 -46.74 10.97 21.70 0.24 -46.51 16 11 Si 0.98 40.46 29.55 68.60 2.03 42.49 16 12 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 13 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 14 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 15 C 0.51 26.83 7.43 86.90 0.65 27.48 16 16 O -0.61 -33.39 16.08 -3.84 -0.06 -33.45 16 17 C 0.13 6.13 6.69 41.95 0.28 6.41 16 18 C -0.19 -7.02 9.72 22.72 0.22 -6.80 16 19 C 0.16 4.48 11.30 84.73 0.96 5.44 16 20 N -0.52 -16.70 9.33 -187.92 -1.75 -18.46 16 21 C 0.32 11.97 7.31 138.79 1.01 12.99 16 22 C -0.13 -4.09 6.23 -11.51 -0.07 -4.16 16 23 C -0.15 -3.62 10.23 30.60 0.31 -3.31 16 24 C -0.13 -2.90 10.01 30.62 0.31 -2.59 16 25 N -0.47 -21.16 6.45 -177.11 -1.14 -22.30 16 26 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 27 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.06 1.62 8.13 -2.38 -0.02 1.60 16 29 H 0.15 7.77 5.50 -2.39 -0.01 7.75 16 30 H 0.10 4.78 7.52 -2.39 -0.02 4.77 16 31 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 32 H 0.16 5.38 7.75 -2.91 -0.02 5.35 16 33 H 0.22 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.11 2.45 7.54 -2.39 -0.02 2.43 16 38 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -70.09 335.81 5.90 -64.19 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 1.10 Total: 28.98 kcal Atomic # 6 Polarization: 43.26 SS G_CDS: 6.99 Total: 50.25 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -3.97 Total: -110.32 kcal Atomic # 8 Polarization: -75.33 SS G_CDS: -0.25 Total: -75.58 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -70.09 5.90 -64.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348797091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.339 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds