Wall clock time and date at job start Fri Apr 10 2020 14:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 110.54440 * 2 1 4 4 O 1.42094 * 110.54472 * 223.24815 * 2 1 3 5 5 N 1.65603 * 104.44999 * 111.62339 * 2 1 3 6 6 C 1.46497 * 120.00011 * 65.00152 * 5 2 1 7 7 C 1.52994 * 109.47220 * 165.00379 * 6 5 2 8 8 N 1.46904 * 109.47290 * 179.97438 * 7 6 5 9 9 C 1.46895 * 111.00332 * 189.99380 * 8 7 6 10 10 C 1.50697 * 109.47377 * 162.30919 * 9 8 7 11 11 O 1.21298 * 119.99860 * 1.33611 * 10 9 8 12 12 N 1.34777 * 120.00311 * 181.33105 * 10 9 8 13 13 C 1.37097 * 119.99857 * 180.02562 * 12 10 9 14 14 H 1.07991 * 120.00604 * 0.02562 * 13 12 10 15 15 C 1.38956 * 119.99726 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00102 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46950 * 90.00504 * 17 15 13 19 19 H 1.48496 * 109.47228 * 210.00226 * 17 15 13 20 20 H 1.48501 * 109.47389 * 330.00618 * 17 15 13 21 21 C 1.46901 * 110.99918 * 66.04088 * 8 7 6 22 22 C 1.53001 * 117.49712 * 127.74317 * 21 8 7 23 23 C 1.53001 * 117.49993 * 59.08200 * 21 8 7 24 24 H 1.08995 * 109.47217 * 308.37498 * 1 2 3 25 25 H 1.09001 * 109.47388 * 68.37699 * 1 2 3 26 26 H 1.09002 * 109.46912 * 188.37403 * 1 2 3 27 27 H 0.97001 * 119.99659 * 245.00412 * 5 2 1 28 28 H 1.08996 * 109.47184 * 44.99523 * 6 5 2 29 29 H 1.09006 * 109.47163 * 285.00118 * 6 5 2 30 30 H 1.09003 * 109.46643 * 299.99456 * 7 6 5 31 31 H 1.08996 * 109.47741 * 59.99485 * 7 6 5 32 32 H 1.09000 * 109.47679 * 282.31492 * 9 8 7 33 33 H 1.09009 * 109.46837 * 42.31662 * 9 8 7 34 34 H 0.96994 * 120.00030 * 0.02562 * 12 10 9 35 35 H 0.96994 * 120.00573 * 179.97438 * 16 15 13 36 36 H 1.09004 * 115.55178 * 273.41276 * 21 8 7 37 37 H 1.08999 * 117.49898 * 0.02562 * 22 21 8 38 38 H 1.09005 * 117.49722 * 145.02363 * 22 21 8 39 39 H 1.08998 * 117.49999 * 214.97741 * 23 21 8 40 40 H 1.09000 * 117.49528 * 359.97438 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 1.8908 -1.9706 1.8508 7 6 2.6875 -2.3829 3.0902 8 7 2.3497 -3.7662 3.4516 9 6 2.9085 -4.1190 4.7635 10 6 2.2070 -5.3418 5.2960 11 8 1.3446 -5.8820 4.6357 12 7 2.5378 -5.8354 6.5057 13 6 1.8999 -6.9481 6.9898 14 1 1.1326 -7.4295 6.4017 15 6 2.2413 -7.4573 8.2369 16 7 3.1752 -6.8719 8.9523 17 14 1.3717 -8.9730 8.8968 18 1 2.1093 -10.1905 8.4737 19 1 1.3271 -8.9118 10.3798 20 1 -0.0126 -9.0220 8.3615 21 6 2.8016 -4.7059 2.4169 22 6 3.6595 -5.8909 2.8650 23 6 4.2964 -4.7334 2.0917 24 1 -0.3633 0.6379 0.8056 25 1 -0.3634 0.3787 -0.9553 26 1 -0.3633 -1.0167 0.1497 27 1 2.6920 -0.0235 2.1256 28 1 2.1393 -2.6333 1.0219 29 1 0.8242 -2.0405 2.0647 30 1 3.7540 -2.3130 2.8763 31 1 2.4389 -1.7202 3.9191 32 1 3.9736 -4.3270 4.6608 33 1 2.7655 -3.2883 5.4547 34 1 3.2271 -5.4033 7.0338 35 1 3.4134 -7.2270 9.8229 36 1 2.1046 -4.8713 1.5953 37 1 3.8882 -5.9734 3.9275 38 1 3.5273 -6.8358 2.3378 39 1 4.5828 -4.9173 1.0563 40 1 4.9444 -4.0539 2.6452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361381012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:07 Heat of formation + Delta-G solvation = -60.659953 kcal Electronic energy + Delta-G solvation = -23266.564393 eV Core-core repulsion = 19631.310914 eV Total energy + Delta-G solvation = -3635.253479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.59402 -37.46571 -37.29444 -36.22572 -35.74264 -33.87542 -33.05210 -31.21159 -29.79858 -29.07587 -26.18243 -24.22922 -23.26855 -21.88636 -20.16353 -19.68460 -18.82285 -17.87855 -17.75952 -16.93598 -16.68928 -16.41042 -15.89494 -15.34582 -14.94431 -14.55714 -14.28689 -14.00929 -13.68817 -13.53978 -13.51247 -13.40775 -12.81425 -12.54136 -12.36783 -12.35515 -12.23846 -11.87679 -11.56451 -11.47807 -11.35774 -11.17401 -11.01768 -10.96018 -10.43998 -10.39515 -10.21209 -9.88551 -9.68967 -9.46394 -8.49437 -7.95553 -7.90650 -6.40839 -3.81391 -0.01239 2.41367 3.17768 3.26494 3.32020 3.51329 3.80021 3.91669 3.97439 4.09016 4.23024 4.42871 4.63383 4.70399 4.88611 5.07165 5.10941 5.14087 5.19637 5.26682 5.32845 5.38875 5.41910 5.65803 5.77758 5.82186 5.84119 5.91745 6.19957 6.26250 6.32114 6.47035 6.68904 7.11666 7.24521 7.55950 8.06995 8.63369 9.19785 9.55743 10.08236 10.77118 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002734 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.070128 B =10237.969748 C =10449.810231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.619 3.381 3 O -0.964 6.964 4 O -0.956 6.956 5 N -1.119 6.119 6 C 0.118 3.882 7 C 0.050 3.950 8 N -0.482 5.482 9 C 0.038 3.962 10 C 0.448 3.552 11 O -0.568 6.568 12 N -0.569 5.569 13 C -0.296 4.296 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.904 5.904 17 Si 0.928 3.072 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.039 3.961 22 C -0.166 4.166 23 C -0.227 4.227 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.417 0.583 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.391 0.609 35 H 0.271 0.729 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 13.265 -13.382 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.710 3.290 3 O -0.954 6.954 4 O -0.946 6.946 5 N -0.879 5.879 6 C -0.008 4.008 7 C -0.079 4.079 8 N -0.205 5.205 9 C -0.093 4.093 10 C 0.233 3.767 11 O -0.450 6.450 12 N -0.207 5.207 13 C -0.425 4.425 14 H 0.120 0.880 15 C -0.180 4.180 16 N -0.545 5.545 17 Si 0.756 3.244 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.070 4.070 22 C -0.204 4.204 23 C -0.266 4.266 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.149 0.851 27 H 0.251 0.749 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.224 0.776 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.432 12.958 -14.411 19.433 hybrid contribution 0.467 -0.358 1.422 1.539 sum -0.965 12.600 -12.989 18.122 Atomic orbital electron populations 1.30523 1.28409 1.11955 1.11453 1.04565 0.77548 0.73678 0.73209 1.93616 1.78109 1.37869 1.85837 1.93623 1.76975 1.61734 1.62298 1.55493 1.74349 1.21606 1.36489 1.21259 1.00032 0.80669 0.98887 1.22236 0.98051 0.90457 0.97140 1.61520 1.58091 1.00155 1.00710 1.22013 0.97346 0.99214 0.90760 1.19597 0.87006 0.86815 0.83311 1.90535 1.34317 1.61610 1.58583 1.41861 1.36166 1.27016 1.15615 1.19669 1.18240 1.03800 1.00833 0.87959 1.25235 0.96988 0.99439 0.96326 1.69604 1.30767 1.41117 1.13041 0.85882 0.79739 0.81093 0.77713 1.20486 1.20998 1.19445 1.22630 0.90332 0.97136 0.96880 1.23258 1.02311 0.93416 1.01381 1.23492 0.98022 1.03574 1.01508 0.85209 0.85474 0.85110 0.74877 0.89841 0.90666 0.93705 0.90074 0.92717 0.89442 0.77646 0.91944 0.86011 0.87876 0.88618 0.88737 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.32 10.89 101.05 1.10 -2.21 16 2 S 2.62 21.11 6.10 -107.50 -0.66 20.46 16 3 O -0.96 -10.82 18.08 -57.54 -1.04 -11.86 16 4 O -0.96 -11.48 17.50 -57.54 -1.01 -12.49 16 5 N -1.12 -8.44 5.89 -10.62 -0.06 -8.50 16 6 C 0.12 1.10 6.13 -4.05 -0.02 1.08 16 7 C 0.05 0.56 4.99 -3.83 -0.02 0.54 16 8 N -0.48 -7.25 4.34 -228.08 -0.99 -8.24 16 9 C 0.04 0.64 5.00 -4.98 -0.02 0.61 16 10 C 0.45 10.04 5.84 -10.99 -0.06 9.98 16 11 O -0.57 -14.63 14.79 5.54 0.08 -14.55 16 12 N -0.57 -13.92 5.29 -10.96 -0.06 -13.98 16 13 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 16 14 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 15 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 16 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 17 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.04 0.59 4.55 -67.71 -0.31 0.28 16 22 C -0.17 -2.69 8.48 -26.69 -0.23 -2.92 16 23 C -0.23 -2.98 9.27 -26.69 -0.25 -3.23 16 24 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.42 2.56 8.62 -34.47 -0.30 2.27 16 28 H 0.08 0.85 6.86 -51.93 -0.36 0.49 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.48 6.87 -51.93 -0.36 0.12 16 31 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 32 H 0.05 0.86 5.99 -51.93 -0.31 0.55 16 33 H 0.09 1.30 7.77 -51.92 -0.40 0.90 16 34 H 0.39 9.20 7.90 -40.82 -0.32 8.87 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.12 1.74 8.03 -51.93 -0.42 1.33 16 37 H 0.10 1.91 4.91 -51.93 -0.26 1.65 16 38 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.11 7.15 -51.93 -0.37 0.74 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -35.53 342.49 -8.47 -43.99 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.54 Total: 11.35 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.06 Total: -3.61 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.39 Total: -54.25 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.96 Total: -38.90 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 21.11 SS G_CDS: -0.66 Total: 20.46 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.53 -8.47 -43.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361381012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.665 kcal (2) G-P(sol) polarization free energy of solvation -35.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds