Wall clock time and date at job start Fri Apr 10 2020 14:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 110.54440 * 2 1 4 4 O 1.42094 * 110.54472 * 223.24815 * 2 1 3 5 5 N 1.65603 * 104.44999 * 111.62339 * 2 1 3 6 6 C 1.46497 * 120.00011 * 65.00152 * 5 2 1 7 7 C 1.52994 * 109.47220 * 165.00379 * 6 5 2 8 8 N 1.46904 * 109.47290 * 179.97438 * 7 6 5 9 9 C 1.46895 * 111.00332 * 189.99380 * 8 7 6 10 10 C 1.50697 * 109.47377 * 162.30919 * 9 8 7 11 11 O 1.21298 * 119.99860 * 1.33611 * 10 9 8 12 12 N 1.34777 * 120.00311 * 181.33105 * 10 9 8 13 13 C 1.37097 * 119.99857 * 180.02562 * 12 10 9 14 14 H 1.07991 * 120.00604 * 0.02562 * 13 12 10 15 15 C 1.38956 * 119.99726 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00102 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46950 * 90.00504 * 17 15 13 19 19 H 1.48496 * 109.47228 * 210.00226 * 17 15 13 20 20 H 1.48501 * 109.47389 * 330.00618 * 17 15 13 21 21 C 1.46901 * 110.99918 * 66.04088 * 8 7 6 22 22 C 1.53001 * 117.49712 * 127.74317 * 21 8 7 23 23 C 1.53001 * 117.49993 * 59.08200 * 21 8 7 24 24 H 1.08995 * 109.47217 * 308.37498 * 1 2 3 25 25 H 1.09001 * 109.47388 * 68.37699 * 1 2 3 26 26 H 1.09002 * 109.46912 * 188.37403 * 1 2 3 27 27 H 0.97001 * 119.99659 * 245.00412 * 5 2 1 28 28 H 1.08996 * 109.47184 * 44.99523 * 6 5 2 29 29 H 1.09006 * 109.47163 * 285.00118 * 6 5 2 30 30 H 1.09003 * 109.46643 * 299.99456 * 7 6 5 31 31 H 1.08996 * 109.47741 * 59.99485 * 7 6 5 32 32 H 1.09000 * 109.47679 * 282.31492 * 9 8 7 33 33 H 1.09009 * 109.46837 * 42.31662 * 9 8 7 34 34 H 0.96994 * 120.00030 * 0.02562 * 12 10 9 35 35 H 0.96994 * 120.00573 * 179.97438 * 16 15 13 36 36 H 1.09004 * 115.55178 * 273.41276 * 21 8 7 37 37 H 1.08999 * 117.49898 * 0.02562 * 22 21 8 38 38 H 1.09005 * 117.49722 * 145.02363 * 22 21 8 39 39 H 1.08998 * 117.49999 * 214.97741 * 23 21 8 40 40 H 1.09000 * 117.49528 * 359.97438 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 1.8908 -1.9706 1.8508 7 6 2.6875 -2.3829 3.0902 8 7 2.3497 -3.7662 3.4516 9 6 2.9085 -4.1190 4.7635 10 6 2.2070 -5.3418 5.2960 11 8 1.3446 -5.8820 4.6357 12 7 2.5378 -5.8354 6.5057 13 6 1.8999 -6.9481 6.9898 14 1 1.1326 -7.4295 6.4017 15 6 2.2413 -7.4573 8.2369 16 7 3.1752 -6.8719 8.9523 17 14 1.3717 -8.9730 8.8968 18 1 2.1093 -10.1905 8.4737 19 1 1.3271 -8.9118 10.3798 20 1 -0.0126 -9.0220 8.3615 21 6 2.8016 -4.7059 2.4169 22 6 3.6595 -5.8909 2.8650 23 6 4.2964 -4.7334 2.0917 24 1 -0.3633 0.6379 0.8056 25 1 -0.3634 0.3787 -0.9553 26 1 -0.3633 -1.0167 0.1497 27 1 2.6920 -0.0235 2.1256 28 1 2.1393 -2.6333 1.0219 29 1 0.8242 -2.0405 2.0647 30 1 3.7540 -2.3130 2.8763 31 1 2.4389 -1.7202 3.9191 32 1 3.9736 -4.3270 4.6608 33 1 2.7655 -3.2883 5.4547 34 1 3.2271 -5.4033 7.0338 35 1 3.4134 -7.2270 9.8229 36 1 2.1046 -4.8713 1.5953 37 1 3.8882 -5.9734 3.9275 38 1 3.5273 -6.8358 2.3378 39 1 4.5828 -4.9173 1.0563 40 1 4.9444 -4.0539 2.6452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361381012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:06 Heat of formation + Delta-G solvation = -91.379163 kcal Electronic energy + Delta-G solvation = -23267.896478 eV Core-core repulsion = 19631.310914 eV Total energy + Delta-G solvation = -3636.585564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95573 -39.00517 -38.12197 -36.99320 -36.55053 -35.82177 -34.16071 -33.17445 -30.29528 -30.17016 -27.57193 -25.92289 -24.19224 -23.05222 -21.50705 -20.54392 -20.25717 -19.65681 -18.57508 -18.06147 -17.64366 -17.36872 -17.13102 -16.51185 -16.27763 -15.74705 -15.64624 -15.40101 -14.98381 -14.83284 -14.21789 -13.98572 -13.92767 -13.58983 -13.51334 -13.43249 -13.16963 -13.07067 -13.01648 -12.81236 -12.66835 -12.37152 -12.25228 -12.15350 -12.09082 -11.84636 -11.57355 -11.44092 -11.02586 -10.34517 -10.22935 -9.93381 -9.16259 -8.41724 -5.89143 -0.61752 1.39730 1.43137 1.55275 1.77069 2.14328 2.31202 2.74290 2.92172 2.94791 3.25089 3.34041 3.44386 3.79902 3.95759 3.99494 4.03909 4.12318 4.22268 4.24373 4.35140 4.39484 4.55726 4.62380 4.68054 4.75624 4.96689 4.99479 5.02156 5.14092 5.17741 5.23256 5.45769 5.87201 6.09579 6.10974 6.21962 6.67390 7.19948 7.64533 8.21361 8.75958 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002734 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.070128 B =10237.969748 C =10449.810231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.629 3.371 3 O -0.999 6.999 4 O -1.001 7.001 5 N -1.113 6.113 6 C 0.120 3.880 7 C 0.049 3.951 8 N -0.496 5.496 9 C 0.050 3.950 10 C 0.451 3.549 11 O -0.604 6.604 12 N -0.581 5.581 13 C -0.324 4.324 14 H 0.078 0.922 15 C -0.015 4.015 16 N -0.924 5.924 17 Si 0.989 3.011 18 H -0.274 1.274 19 H -0.273 1.273 20 H -0.273 1.273 21 C 0.033 3.967 22 C -0.195 4.195 23 C -0.194 4.194 24 H 0.149 0.851 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.424 0.576 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.394 0.606 35 H 0.275 0.725 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 14.466 -13.599 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.725 3.275 3 O -0.990 6.990 4 O -0.991 6.991 5 N -0.874 5.874 6 C -0.007 4.007 7 C -0.079 4.079 8 N -0.219 5.219 9 C -0.081 4.081 10 C 0.238 3.762 11 O -0.488 6.488 12 N -0.220 5.220 13 C -0.454 4.454 14 H 0.096 0.904 15 C -0.214 4.214 16 N -0.566 5.566 17 Si 0.813 3.187 18 H -0.199 1.199 19 H -0.198 1.198 20 H -0.197 1.197 21 C -0.076 4.076 22 C -0.233 4.233 23 C -0.233 4.233 24 H 0.168 0.832 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.260 0.740 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.227 0.773 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.842 14.190 -14.631 20.465 hybrid contribution 0.553 -0.694 1.424 1.678 sum -1.290 13.495 -13.207 18.926 Atomic orbital electron populations 1.30351 1.23734 1.13443 1.13393 1.04019 0.78934 0.72128 0.72441 1.93568 1.79939 1.39256 1.86190 1.93566 1.79105 1.62665 1.63805 1.55251 1.74934 1.21019 1.36199 1.21182 1.00519 0.81169 0.97803 1.22356 0.98865 0.88203 0.98515 1.61445 1.58590 1.02058 0.99847 1.21839 0.97158 0.96930 0.92167 1.20591 0.85996 0.87578 0.82047 1.90503 1.35965 1.63087 1.59294 1.41926 1.36517 1.26893 1.16622 1.19606 1.18872 1.05408 1.01534 0.90363 1.25961 0.97494 1.01859 0.96088 1.69667 1.31393 1.42149 1.13345 0.84987 0.78421 0.77850 0.77461 1.19918 1.19782 1.19747 1.22722 0.91563 0.96404 0.96892 1.23168 1.05397 0.94469 1.00217 1.23504 0.96845 1.00987 1.01926 0.83217 0.83748 0.83919 0.74016 0.90721 0.89452 0.92927 0.88348 0.91400 0.87022 0.77304 0.91531 0.85664 0.90536 0.89201 0.86995 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.36 10.89 113.37 1.23 -3.12 16 2 S 2.63 38.51 6.10 -56.49 -0.34 38.17 16 3 O -1.00 -21.47 18.08 -127.65 -2.31 -23.78 16 4 O -1.00 -23.35 17.50 -127.65 -2.23 -25.58 16 5 N -1.11 -14.43 5.89 -187.50 -1.10 -15.53 16 6 C 0.12 1.96 6.13 86.38 0.53 2.49 16 7 C 0.05 0.95 4.99 86.30 0.43 1.38 16 8 N -0.50 -14.11 4.34 -875.52 -3.80 -17.91 16 9 C 0.05 1.62 5.00 85.56 0.43 2.05 16 10 C 0.45 20.43 5.84 87.66 0.51 20.94 16 11 O -0.60 -31.81 14.79 -3.08 -0.05 -31.85 16 12 N -0.58 -29.00 5.29 -306.98 -1.62 -30.62 16 13 C -0.32 -18.10 9.68 84.04 0.81 -17.29 16 14 H 0.08 4.66 7.16 -2.92 -0.02 4.64 16 15 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 16 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 17 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C 0.03 0.95 4.55 44.92 0.20 1.16 16 22 C -0.20 -6.34 8.48 30.62 0.26 -6.08 16 23 C -0.19 -4.74 9.27 30.62 0.28 -4.46 16 24 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.14 0.57 8.14 -2.39 -0.02 0.56 16 26 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.42 4.28 8.62 -96.75 -0.83 3.45 16 28 H 0.07 1.38 6.86 -2.39 -0.02 1.36 16 29 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.05 0.96 6.87 -2.39 -0.02 0.94 16 31 H 0.10 1.58 7.84 -2.39 -0.02 1.56 16 32 H 0.07 2.04 5.99 -2.39 -0.01 2.02 16 33 H 0.11 3.06 7.77 -2.38 -0.02 3.05 16 34 H 0.39 18.80 7.90 -92.71 -0.73 18.07 16 35 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 36 H 0.13 3.49 8.03 -2.38 -0.02 3.47 16 37 H 0.08 2.90 4.91 -2.39 -0.01 2.88 16 38 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 39 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.10 2.21 7.15 -2.39 -0.02 2.20 16 Total: -1.00 -77.87 342.49 -4.47 -82.34 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.49 Total: 32.53 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.16 Total: -3.25 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -6.24 Total: -113.37 kcal Atomic # 8 Polarization: -76.63 SS G_CDS: -4.59 Total: -81.22 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 38.51 SS G_CDS: -0.34 Total: 38.17 kcal Total: -77.87 -4.47 -82.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361381012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.040 kcal (2) G-P(sol) polarization free energy of solvation -77.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds