Wall clock time and date at job start Fri Apr 10 2020 14:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54389 * 2 1 4 4 O 1.42105 * 110.54191 * 223.25341 * 2 1 3 5 5 N 1.65593 * 104.45130 * 111.62843 * 2 1 3 6 6 C 1.43470 * 118.93699 * 269.97807 * 5 2 1 7 7 C 1.53793 * 107.96172 * 273.65315 * 6 5 2 8 8 C 1.47144 * 111.84486 * 281.67083 * 7 6 5 9 9 N 1.48213 * 110.33954 * 58.28989 * 8 7 6 10 10 C 1.34783 * 119.96546 * 102.49773 * 9 8 7 11 11 O 1.21581 * 120.00177 * 355.08970 * 10 9 8 12 12 N 1.34779 * 119.99741 * 175.09441 * 10 9 8 13 13 C 1.46494 * 119.99894 * 185.09518 * 12 10 9 14 14 C 1.50701 * 109.47314 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00070 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99859 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99634 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47091 * 90.00075 * 18 16 14 20 20 H 1.48497 * 109.46561 * 209.99612 * 18 16 14 21 21 H 1.48499 * 109.47188 * 330.00007 * 18 16 14 22 22 C 1.43623 * 120.06291 * 282.49392 * 9 8 7 23 23 C 1.48852 * 118.94349 * 89.99823 * 5 2 1 24 24 H 1.09005 * 109.47363 * 308.37284 * 1 2 3 25 25 H 1.09000 * 109.47736 * 68.37219 * 1 2 3 26 26 H 1.09006 * 109.47093 * 188.37595 * 1 2 3 27 27 H 1.08993 * 109.76578 * 33.27131 * 6 5 2 28 28 H 1.08999 * 109.76261 * 153.98800 * 6 5 2 29 29 H 1.09003 * 109.00331 * 42.27503 * 7 6 5 30 30 H 1.08999 * 109.00918 * 161.14122 * 7 6 5 31 31 H 1.08992 * 109.32766 * 178.55788 * 8 7 6 32 32 H 1.09006 * 109.32207 * 298.20710 * 8 7 6 33 33 H 0.97006 * 119.99891 * 5.09316 * 12 10 9 34 34 H 1.08997 * 109.47059 * 299.99783 * 13 12 10 35 35 H 1.09004 * 109.47348 * 59.99680 * 13 12 10 36 36 H 0.97001 * 119.99210 * 180.02562 * 17 16 14 37 37 H 1.08992 * 108.87522 * 329.88569 * 22 9 8 38 38 H 1.08999 * 108.87131 * 211.44508 * 22 9 8 39 39 H 1.08999 * 109.48296 * 260.58066 * 23 5 2 40 40 H 1.09000 * 109.47645 * 20.61670 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4906 6 6 2.4009 0.3284 2.5782 7 6 3.8518 0.8372 2.5420 8 6 4.7915 -0.1477 3.1006 9 7 4.7050 -1.4243 2.3525 10 6 5.6515 -1.7389 1.4460 11 8 6.5260 -0.9380 1.1773 12 7 5.6287 -2.9412 0.8375 13 6 6.7177 -3.3271 -0.0632 14 6 6.4532 -4.7067 -0.6090 15 1 5.5631 -5.2425 -0.3142 16 6 7.3481 -5.2851 -1.4840 17 7 8.4322 -4.6328 -1.8426 18 14 7.0205 -6.9955 -2.1600 19 1 6.2398 -6.8891 -3.4188 20 1 8.3121 -7.6748 -2.4345 21 1 6.2492 -7.7820 -1.1642 22 6 3.6135 -2.3264 2.5926 23 6 2.4070 -2.0591 1.6590 24 1 -0.3634 0.6380 0.8057 25 1 -0.3634 0.3788 -0.9553 26 1 -0.3633 -1.0168 0.1497 27 1 1.7135 1.1667 2.4655 28 1 2.2111 -0.1792 3.5239 29 1 4.1291 1.0459 1.5087 30 1 3.9195 1.7585 3.1205 31 1 5.8067 0.2427 3.0315 32 1 4.5449 -0.3284 4.1469 33 1 4.8911 -3.5510 0.9958 34 1 6.7770 -2.6160 -0.8871 35 1 7.6598 -3.3273 0.4851 36 1 9.0616 -5.0397 -2.4585 37 1 3.2889 -2.2195 3.6276 38 1 3.9599 -3.3481 2.4373 39 1 1.5060 -2.4877 2.0978 40 1 2.5912 -2.5165 0.6869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408364604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:40 Heat of formation + Delta-G solvation = -78.156420 kcal Electronic energy + Delta-G solvation = -24763.676363 eV Core-core repulsion = 21127.664180 eV Total energy + Delta-G solvation = -3636.012183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.99538 -37.61650 -37.16060 -35.90500 -34.39212 -34.22171 -33.03249 -31.89299 -29.71821 -28.17555 -26.98304 -26.04446 -23.20576 -22.05654 -21.40706 -19.14430 -18.89081 -18.11781 -17.53142 -16.74826 -16.32924 -15.86729 -15.75267 -15.20252 -14.77977 -14.60065 -14.32044 -13.93112 -13.56109 -13.50474 -13.31434 -13.16898 -13.01351 -12.77930 -12.33461 -12.12044 -12.02647 -11.87252 -11.70755 -11.50009 -11.32418 -11.20288 -11.00849 -10.88056 -10.80628 -10.62868 -10.21030 -9.34911 -9.27053 -9.06133 -8.63500 -8.35396 -7.63658 -6.06314 -4.12103 0.13728 2.50367 3.25948 3.31118 3.36932 3.39355 3.84584 3.95656 3.99018 4.35191 4.39566 4.60382 4.64349 4.76472 4.88599 4.91689 5.08124 5.19262 5.29816 5.29861 5.37841 5.43038 5.47101 5.61709 5.70393 5.77471 6.02591 6.09984 6.38885 6.58339 6.90355 7.21421 7.61578 7.63408 7.69935 7.96377 8.12302 8.85570 9.00933 9.41658 9.57135 11.04166 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.004618 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.225845 B = 6062.232140 C = 6782.461759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.678 4.678 2 S 2.598 3.402 3 O -0.951 6.951 4 O -0.941 6.941 5 N -0.988 5.988 6 C 0.133 3.867 7 C -0.166 4.166 8 C 0.139 3.861 9 N -0.628 5.628 10 C 0.695 3.305 11 O -0.596 6.596 12 N -0.727 5.727 13 C 0.266 3.734 14 C -0.538 4.538 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.110 3.890 23 C 0.087 3.913 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.385 0.615 34 H 0.025 0.975 35 H 0.023 0.977 36 H 0.265 0.735 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.945 7.840 11.999 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.826 4.826 2 S 2.690 3.310 3 O -0.941 6.941 4 O -0.931 6.931 5 N -0.826 5.826 6 C 0.006 3.994 7 C -0.206 4.206 8 C 0.016 3.984 9 N -0.367 5.367 10 C 0.396 3.604 11 O -0.475 6.475 12 N -0.380 5.380 13 C 0.145 3.855 14 C -0.576 4.576 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.018 4.018 23 C -0.039 4.039 24 H 0.142 0.858 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.219 0.781 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.479 8.640 11.015 23.183 hybrid contribution -1.294 -1.316 -0.083 1.848 sum -19.773 7.324 10.932 23.751 Atomic orbital electron populations 1.30636 1.29758 1.11243 1.11001 1.05398 0.77435 0.74484 0.73661 1.93610 1.76918 1.37881 1.85664 1.93670 1.76722 1.61197 1.61474 1.57149 1.83889 1.13905 1.27622 1.20807 0.96632 0.91361 0.90570 1.21689 0.95431 0.99024 1.04436 1.20417 1.01274 0.83201 0.93522 1.46774 1.24885 1.21513 1.43497 1.16129 0.81780 0.83206 0.79264 1.90857 1.39330 1.50005 1.67274 1.45814 1.27846 1.15392 1.48914 1.18976 0.83947 0.94858 0.87718 1.21207 1.07784 1.00671 1.27979 0.92033 1.24936 0.94820 0.98241 0.96038 1.69985 1.11024 1.37782 1.33553 0.86423 0.77609 0.83546 0.79328 1.20496 1.21115 1.19826 1.21313 0.87093 0.94593 0.98812 1.22903 0.98909 0.78762 1.03306 0.85771 0.85733 0.85526 0.90690 0.90157 0.89951 0.90313 0.89195 0.91778 0.78127 0.95649 0.95901 0.92558 0.90537 0.89742 0.90553 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -4.50 10.99 101.05 1.11 -3.39 16 2 S 2.60 31.18 5.91 -107.50 -0.64 30.55 16 3 O -0.95 -14.30 15.72 -57.54 -0.90 -15.20 16 4 O -0.94 -15.91 16.43 -57.54 -0.95 -16.86 16 5 N -0.99 -10.23 2.71 -113.22 -0.31 -10.53 16 6 C 0.13 1.14 5.23 -5.23 -0.03 1.11 16 7 C -0.17 -1.96 5.47 -29.13 -0.16 -2.11 16 8 C 0.14 1.80 5.67 -5.91 -0.03 1.77 16 9 N -0.63 -9.80 2.46 -182.41 -0.45 -10.25 16 10 C 0.70 15.24 8.26 -86.91 -0.72 14.52 16 11 O -0.60 -15.74 15.82 5.29 0.08 -15.65 16 12 N -0.73 -16.47 5.39 -66.42 -0.36 -16.83 16 13 C 0.27 7.47 5.43 -5.20 -0.03 7.44 16 14 C -0.54 -15.13 9.28 -34.44 -0.32 -15.44 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 18 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.11 1.21 5.08 -4.58 -0.02 1.18 16 23 C 0.09 0.86 6.81 -1.75 -0.01 0.85 16 24 H 0.12 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.12 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 28 H 0.08 0.49 7.59 -51.93 -0.39 0.09 16 29 H 0.08 1.34 6.84 -51.93 -0.36 0.98 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.39 7.18 -51.93 -0.37 1.02 16 32 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.38 7.45 6.04 -40.82 -0.25 7.20 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16 38 H 0.08 0.94 6.22 -51.93 -0.32 0.62 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 1.25 6.71 -51.93 -0.35 0.90 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -40.00 333.33 -8.84 -48.84 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.76 Total: 3.11 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -0.31 Total: 7.64 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -0.38 Total: -63.82 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -1.77 Total: -47.72 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 31.18 SS G_CDS: -0.64 Total: 30.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -40.00 -8.84 -48.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408364604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.319 kcal (2) G-P(sol) polarization free energy of solvation -39.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds