Wall clock time and date at job start Fri Apr 10 2020 14:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54389 * 2 1 4 4 O 1.42105 * 110.54191 * 223.25341 * 2 1 3 5 5 N 1.65593 * 104.45130 * 111.62843 * 2 1 3 6 6 C 1.43470 * 118.93699 * 269.97807 * 5 2 1 7 7 C 1.53793 * 107.96172 * 273.65315 * 6 5 2 8 8 C 1.47144 * 111.84486 * 281.67083 * 7 6 5 9 9 N 1.48213 * 110.33954 * 58.28989 * 8 7 6 10 10 C 1.34783 * 119.96546 * 102.49773 * 9 8 7 11 11 O 1.21581 * 120.00177 * 355.08970 * 10 9 8 12 12 N 1.34779 * 119.99741 * 175.09441 * 10 9 8 13 13 C 1.46494 * 119.99894 * 185.09518 * 12 10 9 14 14 C 1.50701 * 109.47314 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00070 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99859 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99634 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47091 * 90.00075 * 18 16 14 20 20 H 1.48497 * 109.46561 * 209.99612 * 18 16 14 21 21 H 1.48499 * 109.47188 * 330.00007 * 18 16 14 22 22 C 1.43623 * 120.06291 * 282.49392 * 9 8 7 23 23 C 1.48852 * 118.94349 * 89.99823 * 5 2 1 24 24 H 1.09005 * 109.47363 * 308.37284 * 1 2 3 25 25 H 1.09000 * 109.47736 * 68.37219 * 1 2 3 26 26 H 1.09006 * 109.47093 * 188.37595 * 1 2 3 27 27 H 1.08993 * 109.76578 * 33.27131 * 6 5 2 28 28 H 1.08999 * 109.76261 * 153.98800 * 6 5 2 29 29 H 1.09003 * 109.00331 * 42.27503 * 7 6 5 30 30 H 1.08999 * 109.00918 * 161.14122 * 7 6 5 31 31 H 1.08992 * 109.32766 * 178.55788 * 8 7 6 32 32 H 1.09006 * 109.32207 * 298.20710 * 8 7 6 33 33 H 0.97006 * 119.99891 * 5.09316 * 12 10 9 34 34 H 1.08997 * 109.47059 * 299.99783 * 13 12 10 35 35 H 1.09004 * 109.47348 * 59.99680 * 13 12 10 36 36 H 0.97001 * 119.99210 * 180.02562 * 17 16 14 37 37 H 1.08992 * 108.87522 * 329.88569 * 22 9 8 38 38 H 1.08999 * 108.87131 * 211.44508 * 22 9 8 39 39 H 1.08999 * 109.48296 * 260.58066 * 23 5 2 40 40 H 1.09000 * 109.47645 * 20.61670 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4906 6 6 2.4009 0.3284 2.5782 7 6 3.8518 0.8372 2.5420 8 6 4.7915 -0.1477 3.1006 9 7 4.7050 -1.4243 2.3525 10 6 5.6515 -1.7389 1.4460 11 8 6.5260 -0.9380 1.1773 12 7 5.6287 -2.9412 0.8375 13 6 6.7177 -3.3271 -0.0632 14 6 6.4532 -4.7067 -0.6090 15 1 5.5631 -5.2425 -0.3142 16 6 7.3481 -5.2851 -1.4840 17 7 8.4322 -4.6328 -1.8426 18 14 7.0205 -6.9955 -2.1600 19 1 6.2398 -6.8891 -3.4188 20 1 8.3121 -7.6748 -2.4345 21 1 6.2492 -7.7820 -1.1642 22 6 3.6135 -2.3264 2.5926 23 6 2.4070 -2.0591 1.6590 24 1 -0.3634 0.6380 0.8057 25 1 -0.3634 0.3788 -0.9553 26 1 -0.3633 -1.0168 0.1497 27 1 1.7135 1.1667 2.4655 28 1 2.2111 -0.1792 3.5239 29 1 4.1291 1.0459 1.5087 30 1 3.9195 1.7585 3.1205 31 1 5.8067 0.2427 3.0315 32 1 4.5449 -0.3284 4.1469 33 1 4.8911 -3.5510 0.9958 34 1 6.7770 -2.6160 -0.8871 35 1 7.6598 -3.3273 0.4851 36 1 9.0616 -5.0397 -2.4585 37 1 3.2889 -2.2195 3.6276 38 1 3.9599 -3.3481 2.4373 39 1 1.5060 -2.4877 2.0978 40 1 2.5912 -2.5165 0.6869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408364604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:39 Heat of formation + Delta-G solvation = -112.686112 kcal Electronic energy + Delta-G solvation = -24765.173683 eV Core-core repulsion = 21127.664180 eV Total energy + Delta-G solvation = -3637.509503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41912 -38.86138 -38.21924 -36.94800 -36.26039 -35.52342 -34.56381 -33.51404 -30.32393 -29.64550 -28.57948 -27.02696 -24.98904 -23.44252 -22.49217 -20.85380 -19.89116 -19.33249 -18.58575 -18.05505 -17.74606 -17.25824 -17.00723 -16.58507 -16.43382 -15.96110 -15.43360 -15.14571 -14.82689 -14.48790 -14.39712 -14.10008 -14.01063 -13.93250 -13.82565 -13.70993 -13.24819 -13.15512 -13.07111 -12.87095 -12.70841 -12.57926 -12.22933 -12.11776 -12.05907 -11.92693 -11.49711 -11.46337 -11.11773 -10.79833 -10.09178 -9.81756 -9.35373 -8.27528 -6.44599 -0.69194 1.42454 1.47216 1.57644 1.66550 1.90147 2.23660 2.40077 3.05603 3.07159 3.17679 3.27901 3.69474 4.00792 4.03048 4.07296 4.10176 4.21037 4.43157 4.47816 4.63242 4.73335 4.80823 4.84457 4.89899 4.94009 5.01261 5.08338 5.24903 5.27692 5.44940 5.49641 5.65699 5.77702 5.85224 5.88918 6.19373 6.66637 7.23381 7.26736 7.72938 8.85478 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.004618 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.225845 B = 6062.232140 C = 6782.461759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.580 3.420 3 O -0.999 6.999 4 O -1.010 7.010 5 N -0.989 5.989 6 C 0.132 3.868 7 C -0.169 4.169 8 C 0.134 3.866 9 N -0.615 5.615 10 C 0.685 3.315 11 O -0.655 6.655 12 N -0.722 5.722 13 C 0.286 3.714 14 C -0.552 4.552 15 H 0.085 0.915 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.990 3.010 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.250 1.250 22 C 0.093 3.907 23 C 0.087 3.913 24 H 0.158 0.842 25 H 0.136 0.864 26 H 0.153 0.847 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.024 0.976 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.119 0.881 33 H 0.403 0.597 34 H -0.028 1.028 35 H -0.014 1.014 36 H 0.268 0.732 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.137 0.863 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.687 6.119 14.671 29.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.792 4.792 2 S 2.678 3.322 3 O -0.989 6.989 4 O -1.000 7.000 5 N -0.828 5.828 6 C 0.007 3.993 7 C -0.209 4.209 8 C 0.013 3.987 9 N -0.352 5.352 10 C 0.387 3.613 11 O -0.538 6.538 12 N -0.377 5.377 13 C 0.163 3.837 14 C -0.590 4.590 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.813 3.187 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.173 1.173 22 C -0.032 4.032 23 C -0.039 4.039 24 H 0.177 0.823 25 H 0.154 0.846 26 H 0.172 0.828 27 H 0.117 0.883 28 H 0.144 0.856 29 H 0.043 0.957 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.240 0.760 34 H -0.010 1.010 35 H 0.004 0.996 36 H 0.077 0.923 37 H 0.149 0.851 38 H 0.099 0.901 39 H 0.154 0.846 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.252 6.924 13.751 27.887 hybrid contribution 0.105 -0.649 -0.844 1.070 sum -23.146 6.275 12.908 27.235 Atomic orbital electron populations 1.30265 1.21676 1.14027 1.13201 1.05472 0.80358 0.72774 0.73555 1.93547 1.79653 1.39518 1.86182 1.93589 1.79917 1.62531 1.63951 1.56949 1.84579 1.14245 1.26995 1.21070 0.94155 0.92305 0.91779 1.21731 0.97942 1.00070 1.01154 1.20708 0.99821 0.82258 0.95952 1.46828 1.24341 1.22935 1.41049 1.16476 0.82590 0.82243 0.80027 1.90805 1.42226 1.51493 1.69313 1.45384 1.27242 1.16480 1.48570 1.18363 0.84388 0.94440 0.86514 1.21574 1.08770 1.00385 1.28298 0.89707 1.26150 0.94156 1.03503 0.96038 1.70169 1.12391 1.40337 1.34317 0.85085 0.77766 0.77059 0.78825 1.19883 1.20749 1.17307 1.21831 0.85917 0.93267 1.02231 1.23038 1.00599 0.78570 1.01689 0.82333 0.84560 0.82833 0.88273 0.85572 0.95692 0.87780 0.93138 0.86280 0.76009 1.01000 0.99645 0.92274 0.85148 0.90119 0.84566 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.59 10.99 113.37 1.25 -4.34 16 2 S 2.58 60.92 5.91 -56.49 -0.33 60.58 16 3 O -1.00 -31.29 15.72 -127.65 -2.01 -33.30 16 4 O -1.01 -36.21 16.43 -127.65 -2.10 -38.31 16 5 N -0.99 -17.95 2.71 -512.12 -1.39 -19.33 16 6 C 0.13 1.75 5.23 87.21 0.46 2.20 16 7 C -0.17 -3.84 5.47 29.04 0.16 -3.68 16 8 C 0.13 3.37 5.67 84.23 0.48 3.85 16 9 N -0.62 -19.05 2.46 -849.27 -2.09 -21.14 16 10 C 0.69 32.06 8.26 179.05 1.48 33.54 16 11 O -0.66 -38.02 15.82 -3.97 -0.06 -38.08 16 12 N -0.72 -34.72 5.39 -482.30 -2.60 -37.32 16 13 C 0.29 17.37 5.43 85.63 0.47 17.83 16 14 C -0.55 -32.05 9.28 25.60 0.24 -31.81 16 15 H 0.08 4.41 7.60 -2.91 -0.02 4.39 16 16 C 0.00 0.04 5.46 84.66 0.46 0.50 16 17 N -0.93 -59.39 13.29 21.45 0.28 -59.10 16 18 Si 0.99 44.08 29.54 68.60 2.03 46.10 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 22 C 0.09 1.75 5.08 87.55 0.45 2.20 16 23 C 0.09 1.43 6.81 86.57 0.59 2.02 16 24 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 0.87 7.79 -2.39 -0.02 0.86 16 28 H 0.13 0.59 7.59 -2.39 -0.02 0.58 16 29 H 0.02 0.86 6.84 -2.39 -0.02 0.84 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.67 7.18 -2.39 -0.02 1.65 16 32 H 0.12 1.74 8.05 -2.38 -0.02 1.72 16 33 H 0.40 16.02 6.04 -92.70 -0.56 15.46 16 34 H -0.03 -1.96 8.14 -2.39 -0.02 -1.98 16 35 H -0.01 -0.96 8.14 -2.38 -0.02 -0.98 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.13 1.16 7.73 -2.39 -0.02 1.15 16 38 H 0.08 1.61 6.22 -2.39 -0.01 1.60 16 39 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 1.60 6.71 -2.39 -0.02 1.59 16 Total: -1.00 -101.47 333.33 -1.75 -103.22 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.49 Total: 14.35 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 6.02 Total: 22.31 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -5.79 Total: -136.89 kcal Atomic # 8 Polarization: -105.52 SS G_CDS: -4.17 Total: -109.68 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 60.92 SS G_CDS: -0.33 Total: 60.58 kcal Total: -101.47 -1.75 -103.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408364604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.462 kcal (2) G-P(sol) polarization free energy of solvation -101.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds