Wall clock time and date at job start Fri Apr 10 2020 14:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.54626 * 2 1 4 4 O 1.42101 * 110.53678 * 223.24899 * 2 1 3 5 5 N 1.65597 * 104.45066 * 111.62686 * 2 1 3 6 6 C 1.46499 * 119.99926 * 64.71997 * 5 2 1 7 7 C 1.53790 * 113.61572 * 244.41461 * 6 5 2 8 8 C 1.53955 * 87.02056 * 220.04843 * 7 6 5 9 9 N 1.46497 * 113.53746 * 270.81103 * 8 7 6 10 10 C 1.34767 * 120.00030 * 252.49253 * 9 8 7 11 11 O 1.21589 * 120.00139 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00346 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00278 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47151 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47161 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00258 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00375 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99748 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00411 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47054 * 90.00329 * 19 17 15 21 21 H 1.48503 * 109.46936 * 209.99912 * 19 17 15 22 22 H 1.48495 * 109.46918 * 330.00043 * 19 17 15 23 23 C 1.53781 * 113.61560 * 146.80752 * 6 5 2 24 24 H 1.09004 * 109.46533 * 308.37804 * 1 2 3 25 25 H 1.09004 * 109.46969 * 68.37081 * 1 2 3 26 26 H 1.08990 * 109.47555 * 188.37683 * 1 2 3 27 27 H 0.97001 * 120.00224 * 245.00210 * 5 2 1 28 28 H 1.08996 * 112.85022 * 15.60611 * 6 5 2 29 29 H 1.08995 * 113.61040 * 334.56887 * 7 6 5 30 30 H 1.09004 * 113.61344 * 105.46893 * 7 6 5 31 31 H 1.09000 * 113.74328 * 139.94056 * 8 7 6 32 32 H 0.96999 * 120.00116 * 72.49623 * 9 8 7 33 33 H 0.96999 * 119.99799 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47732 * 300.00432 * 13 12 10 35 35 H 1.09003 * 109.46900 * 60.00565 * 13 12 10 36 36 H 1.08991 * 109.47299 * 300.00442 * 14 13 12 37 37 H 1.09003 * 109.46889 * 60.00397 * 14 13 12 38 38 H 0.97000 * 120.00037 * 180.02562 * 18 17 15 39 39 H 1.09003 * 113.61447 * 254.52836 * 23 6 5 40 40 H 1.09005 * 113.61094 * 25.34958 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3125 -0.9693 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.8854 -1.9687 1.8529 7 6 0.8861 -2.0697 3.0176 8 6 1.7241 -3.2560 3.5281 9 7 1.2989 -4.5488 2.9860 10 6 0.6547 -5.4313 3.7750 11 8 0.4260 -5.1543 4.9366 12 7 0.2631 -6.6206 3.2762 13 6 -0.4367 -7.5801 4.1340 14 6 -0.7659 -8.8387 3.3287 15 6 -1.4852 -9.8259 4.2112 16 1 -1.6877 -9.5802 5.2432 17 6 -1.8848 -11.0430 3.7013 18 7 -1.6378 -11.3425 2.4447 19 14 -2.7770 -12.2665 4.7951 20 1 -4.2407 -12.0308 4.7101 21 1 -2.4712 -13.6481 4.3445 22 1 -2.3284 -12.0933 6.2000 23 6 2.9157 -2.6359 2.7794 24 1 -0.3632 0.6381 0.8057 25 1 -0.3633 0.3788 -0.9553 26 1 -0.3634 -1.0166 0.1497 27 1 2.6921 -0.0237 2.1256 28 1 1.6141 -2.5781 0.9909 29 1 0.9017 -1.2060 3.6822 30 1 -0.1209 -2.3472 2.7060 31 1 1.8489 -3.2713 4.6108 32 1 1.4811 -4.7697 2.0593 33 1 0.4452 -6.8415 2.3494 34 1 0.2004 -7.8454 4.9777 35 1 -1.3597 -7.1323 4.5024 36 1 -1.4028 -8.5738 2.4848 37 1 0.1573 -9.2863 2.9606 38 1 -1.9192 -12.1986 2.0859 39 1 3.5448 -3.3700 2.2759 40 1 3.4881 -1.9271 3.3778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619760359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:50 Heat of formation + Delta-G solvation = -88.451182 kcal Electronic energy + Delta-G solvation = -22457.235385 eV Core-core repulsion = 18820.776787 eV Total energy + Delta-G solvation = -3636.458597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.40734 -38.74788 -37.47258 -36.35235 -34.94540 -34.25392 -32.91697 -31.95293 -29.92424 -29.35131 -26.09339 -25.10535 -24.08645 -21.44984 -20.75746 -20.01896 -19.82589 -18.31307 -17.94109 -17.01153 -16.57766 -16.39135 -16.05892 -15.55708 -15.14071 -14.79060 -14.52499 -13.93787 -13.81860 -13.71033 -13.62699 -13.50170 -13.22702 -12.92694 -12.76313 -12.50694 -12.41774 -12.30092 -11.90343 -11.57484 -11.31030 -11.20863 -11.04261 -10.77313 -10.64274 -10.33989 -9.99796 -9.83384 -9.58404 -9.28212 -9.10000 -8.51223 -8.30112 -6.10628 -4.13331 -0.15935 2.26984 2.90315 3.28647 3.34979 3.37204 3.39361 3.47224 3.76301 4.03465 4.15745 4.31198 4.36876 4.45704 4.52284 4.54758 4.65753 4.85721 5.22503 5.26603 5.32271 5.33232 5.55759 5.61843 5.66062 5.84229 6.26541 6.36949 6.51395 6.58145 6.75040 6.95096 7.17143 7.54595 7.61303 7.88442 8.23399 8.37914 8.89898 8.95034 9.51557 11.01031 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.002211 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.511881 B =12663.241930 C =13126.746888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.672 4.672 2 S 2.612 3.388 3 O -0.963 6.963 4 O -0.957 6.957 5 N -1.105 6.105 6 C 0.119 3.881 7 C -0.171 4.171 8 C 0.146 3.854 9 N -0.738 5.738 10 C 0.700 3.300 11 O -0.596 6.596 12 N -0.738 5.738 13 C 0.140 3.860 14 C 0.013 3.987 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.148 4.148 24 H 0.130 0.870 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.419 0.581 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.395 0.605 33 H 0.394 0.606 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.083 0.917 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.132 23.757 -4.851 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.822 4.822 2 S 2.704 3.296 3 O -0.953 6.953 4 O -0.946 6.946 5 N -0.863 5.863 6 C 0.012 3.988 7 C -0.213 4.213 8 C 0.038 3.962 9 N -0.394 5.394 10 C 0.400 3.600 11 O -0.474 6.474 12 N -0.391 5.391 13 C 0.017 3.983 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.188 4.188 24 H 0.148 0.852 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.254 0.746 28 H 0.134 0.866 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.229 0.771 33 H 0.227 0.773 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.373 23.981 -4.712 25.527 hybrid contribution -0.882 -0.824 0.133 1.214 sum 6.491 23.157 -4.579 24.482 Atomic orbital electron populations 1.30542 1.28184 1.11892 1.11600 1.04772 0.77599 0.73798 0.73451 1.93620 1.78052 1.37848 1.85811 1.93635 1.76992 1.61769 1.62247 1.55543 1.73425 1.20991 1.36359 1.22528 0.97149 0.81607 0.97543 1.24128 0.99465 0.99657 0.98009 1.21418 0.93583 0.81489 0.99718 1.44851 1.63529 1.16779 1.14197 1.16044 0.78577 0.80535 0.84821 1.90892 1.62031 1.78324 1.16194 1.45555 1.62015 1.16065 1.15450 1.21605 0.94696 0.88778 0.93198 1.19325 0.97261 0.90190 0.95700 1.21047 1.37265 1.00325 0.97331 0.92217 1.24999 0.95969 0.98233 0.95128 1.69955 1.46837 1.23100 1.13450 0.86505 0.79936 0.80259 0.80807 1.20575 1.21184 1.19717 1.23711 0.96946 1.00139 0.97993 0.85168 0.85363 0.85242 0.74626 0.86561 0.88407 0.90248 0.87211 0.77084 0.77319 0.92732 0.92754 0.95985 0.95945 0.92845 0.89819 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.49 10.88 101.05 1.10 -1.39 16 2 S 2.61 16.83 6.07 -107.50 -0.65 16.17 16 3 O -0.96 -9.49 18.08 -57.54 -1.04 -10.53 16 4 O -0.96 -9.92 17.58 -57.54 -1.01 -10.93 16 5 N -1.11 -5.53 5.68 -4.20 -0.02 -5.55 16 6 C 0.12 0.69 4.18 -67.11 -0.28 0.41 16 7 C -0.17 -1.13 7.69 -25.82 -0.20 -1.33 16 8 C 0.15 1.30 4.33 -67.02 -0.29 1.01 16 9 N -0.74 -7.99 5.26 -57.79 -0.30 -8.30 16 10 C 0.70 11.30 8.57 -86.92 -0.74 10.56 16 11 O -0.60 -12.05 15.94 5.29 0.08 -11.96 16 12 N -0.74 -12.31 5.56 -65.22 -0.36 -12.68 16 13 C 0.14 2.92 5.61 -4.04 -0.02 2.89 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.15 -0.91 7.61 -25.92 -0.20 -1.11 16 24 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 25 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.13 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.42 1.48 8.90 -34.47 -0.31 1.18 16 28 H 0.12 0.63 7.76 -51.93 -0.40 0.23 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.11 1.19 7.46 -51.93 -0.39 0.80 16 32 H 0.40 3.24 8.72 -40.82 -0.36 2.88 16 33 H 0.39 5.58 8.49 -40.82 -0.35 5.24 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -37.79 353.78 -9.44 -47.23 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.99 Total: 2.06 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.19 Total: -1.86 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.05 Total: -51.68 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.97 Total: -33.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 16.83 SS G_CDS: -0.65 Total: 16.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.79 -9.44 -47.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619760359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.217 kcal (2) G-P(sol) polarization free energy of solvation -37.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds