Wall clock time and date at job start Fri Apr 10 2020 14:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.54626 * 2 1 4 4 O 1.42101 * 110.53678 * 223.24899 * 2 1 3 5 5 N 1.65597 * 104.45066 * 111.62686 * 2 1 3 6 6 C 1.46499 * 119.99926 * 64.71997 * 5 2 1 7 7 C 1.53790 * 113.61572 * 244.41461 * 6 5 2 8 8 C 1.53955 * 87.02056 * 220.04843 * 7 6 5 9 9 N 1.46497 * 113.53746 * 270.81103 * 8 7 6 10 10 C 1.34767 * 120.00030 * 252.49253 * 9 8 7 11 11 O 1.21589 * 120.00139 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00346 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00278 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47151 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47161 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00258 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00375 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99748 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00411 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47054 * 90.00329 * 19 17 15 21 21 H 1.48503 * 109.46936 * 209.99912 * 19 17 15 22 22 H 1.48495 * 109.46918 * 330.00043 * 19 17 15 23 23 C 1.53781 * 113.61560 * 146.80752 * 6 5 2 24 24 H 1.09004 * 109.46533 * 308.37804 * 1 2 3 25 25 H 1.09004 * 109.46969 * 68.37081 * 1 2 3 26 26 H 1.08990 * 109.47555 * 188.37683 * 1 2 3 27 27 H 0.97001 * 120.00224 * 245.00210 * 5 2 1 28 28 H 1.08996 * 112.85022 * 15.60611 * 6 5 2 29 29 H 1.08995 * 113.61040 * 334.56887 * 7 6 5 30 30 H 1.09004 * 113.61344 * 105.46893 * 7 6 5 31 31 H 1.09000 * 113.74328 * 139.94056 * 8 7 6 32 32 H 0.96999 * 120.00116 * 72.49623 * 9 8 7 33 33 H 0.96999 * 119.99799 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47732 * 300.00432 * 13 12 10 35 35 H 1.09003 * 109.46900 * 60.00565 * 13 12 10 36 36 H 1.08991 * 109.47299 * 300.00442 * 14 13 12 37 37 H 1.09003 * 109.46889 * 60.00397 * 14 13 12 38 38 H 0.97000 * 120.00037 * 180.02562 * 18 17 15 39 39 H 1.09003 * 113.61447 * 254.52836 * 23 6 5 40 40 H 1.09005 * 113.61094 * 25.34958 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3125 -0.9693 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.8854 -1.9687 1.8529 7 6 0.8861 -2.0697 3.0176 8 6 1.7241 -3.2560 3.5281 9 7 1.2989 -4.5488 2.9860 10 6 0.6547 -5.4313 3.7750 11 8 0.4260 -5.1543 4.9366 12 7 0.2631 -6.6206 3.2762 13 6 -0.4367 -7.5801 4.1340 14 6 -0.7659 -8.8387 3.3287 15 6 -1.4852 -9.8259 4.2112 16 1 -1.6877 -9.5802 5.2432 17 6 -1.8848 -11.0430 3.7013 18 7 -1.6378 -11.3425 2.4447 19 14 -2.7770 -12.2665 4.7951 20 1 -4.2407 -12.0308 4.7101 21 1 -2.4712 -13.6481 4.3445 22 1 -2.3284 -12.0933 6.2000 23 6 2.9157 -2.6359 2.7794 24 1 -0.3632 0.6381 0.8057 25 1 -0.3633 0.3788 -0.9553 26 1 -0.3634 -1.0166 0.1497 27 1 2.6921 -0.0237 2.1256 28 1 1.6141 -2.5781 0.9909 29 1 0.9017 -1.2060 3.6822 30 1 -0.1209 -2.3472 2.7060 31 1 1.8489 -3.2713 4.6108 32 1 1.4811 -4.7697 2.0593 33 1 0.4452 -6.8415 2.3494 34 1 0.2004 -7.8454 4.9777 35 1 -1.3597 -7.1323 4.5024 36 1 -1.4028 -8.5738 2.4848 37 1 0.1573 -9.2863 2.9606 38 1 -1.9192 -12.1986 2.0859 39 1 3.5448 -3.3700 2.2759 40 1 3.4881 -1.9271 3.3778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619760359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:49 Heat of formation + Delta-G solvation = -120.853553 kcal Electronic energy + Delta-G solvation = -22458.640457 eV Core-core repulsion = 18820.776787 eV Total energy + Delta-G solvation = -3637.863670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35182 -39.74470 -38.11724 -36.99668 -36.55209 -35.14856 -34.75823 -32.91763 -31.08203 -30.25201 -26.80785 -26.61087 -25.00140 -23.03643 -22.15628 -20.67128 -20.47666 -19.45910 -18.56773 -18.41848 -17.60152 -17.12236 -17.02252 -16.58590 -16.48117 -16.06861 -15.84223 -15.09986 -15.02476 -14.70753 -14.25852 -14.15991 -13.96342 -13.90148 -13.65327 -13.37524 -13.18684 -13.18109 -13.08724 -12.92360 -12.53317 -12.47274 -12.24616 -12.12076 -11.85677 -11.66203 -11.47602 -11.35838 -11.16523 -10.58687 -10.31853 -10.22721 -9.66837 -8.22510 -6.32435 -0.64014 1.43299 1.43687 1.55029 1.78297 1.80639 2.19515 2.42746 2.90592 3.12543 3.29036 3.38684 3.49788 3.61570 3.94587 4.02732 4.04307 4.19224 4.36876 4.50368 4.55951 4.77976 4.86178 4.88867 4.92554 4.97639 5.01245 5.12313 5.27309 5.35279 5.54546 5.62663 5.73392 5.81830 6.09591 6.17193 6.19614 6.81239 7.17644 7.36988 7.65298 8.89358 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.002211 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.511881 B =12663.241930 C =13126.746888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.623 3.377 3 O -1.001 7.001 4 O -1.001 7.001 5 N -1.098 6.098 6 C 0.123 3.877 7 C -0.162 4.162 8 C 0.127 3.873 9 N -0.717 5.717 10 C 0.700 3.300 11 O -0.638 6.638 12 N -0.734 5.734 13 C 0.161 3.839 14 C 0.023 3.977 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.266 1.266 23 C -0.137 4.137 24 H 0.149 0.851 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.427 0.573 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.411 0.589 33 H 0.407 0.593 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 24.602 -4.784 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.719 3.281 3 O -0.991 6.991 4 O -0.991 6.991 5 N -0.857 5.857 6 C 0.016 3.984 7 C -0.203 4.203 8 C 0.020 3.980 9 N -0.373 5.373 10 C 0.400 3.600 11 O -0.520 6.520 12 N -0.389 5.389 13 C 0.037 3.963 14 C -0.014 4.014 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.192 4.192 18 N -0.567 5.567 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.177 4.177 24 H 0.167 0.833 25 H 0.159 0.841 26 H 0.160 0.840 27 H 0.263 0.737 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.248 0.752 33 H 0.242 0.758 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.982 24.873 -4.691 26.257 hybrid contribution -0.743 -1.025 0.106 1.270 sum 6.239 23.849 -4.586 25.074 Atomic orbital electron populations 1.30402 1.24092 1.13366 1.13266 1.04178 0.78760 0.72234 0.72923 1.93568 1.79809 1.39470 1.86298 1.93579 1.78968 1.62649 1.63885 1.55285 1.73755 1.20816 1.35825 1.22495 0.96569 0.81868 0.97513 1.24099 0.99051 0.98817 0.98303 1.21654 0.96231 0.81124 0.98970 1.44674 1.61716 1.16522 1.14370 1.16138 0.78631 0.80626 0.84606 1.90864 1.63766 1.79119 1.18250 1.45228 1.62036 1.15957 1.15652 1.21049 0.94401 0.88191 0.92692 1.19128 0.95924 0.91164 0.95199 1.21477 1.37698 1.01387 0.97807 0.92276 1.25862 0.96705 1.00145 0.96500 1.70057 1.47804 1.23787 1.15020 0.85457 0.78844 0.77762 0.79057 1.19759 1.20633 1.19072 1.23708 0.96235 1.00136 0.97663 0.83269 0.84058 0.83977 0.73669 0.85971 0.86800 0.90553 0.89296 0.75246 0.75765 0.93944 0.93757 0.97241 0.97359 0.92584 0.89666 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.96 10.88 113.37 1.23 -1.73 16 2 S 2.62 30.25 6.07 -56.49 -0.34 29.91 16 3 O -1.00 -19.02 18.08 -127.65 -2.31 -21.33 16 4 O -1.00 -20.05 17.58 -127.65 -2.24 -22.29 16 5 N -1.10 -8.71 5.68 -167.19 -0.95 -9.66 16 6 C 0.12 1.13 4.18 45.52 0.19 1.32 16 7 C -0.16 -1.77 7.69 31.18 0.24 -1.53 16 8 C 0.13 2.08 4.33 45.58 0.20 2.27 16 9 N -0.72 -14.62 5.26 -455.02 -2.40 -17.02 16 10 C 0.70 22.28 8.57 179.06 1.53 23.81 16 11 O -0.64 -25.93 15.94 -3.99 -0.06 -25.99 16 12 N -0.73 -24.32 5.56 -478.53 -2.66 -26.99 16 13 C 0.16 6.80 5.61 86.38 0.48 7.28 16 14 C 0.02 1.16 5.09 29.85 0.15 1.31 16 15 C -0.55 -30.10 9.11 25.60 0.23 -29.87 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.01 0.36 5.46 84.65 0.46 0.83 16 18 N -0.93 -53.86 13.29 21.45 0.28 -53.57 16 19 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 C -0.14 -1.40 7.61 31.12 0.24 -1.16 16 24 H 0.15 0.20 8.14 -2.39 -0.02 0.18 16 25 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.14 0.39 8.14 -2.40 -0.02 0.37 16 27 H 0.43 2.12 8.90 -96.74 -0.86 1.26 16 28 H 0.12 1.02 7.76 -2.39 -0.02 1.00 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.88 7.46 -2.39 -0.02 1.87 16 32 H 0.41 5.96 8.72 -92.71 -0.81 5.16 16 33 H 0.41 11.27 8.49 -92.71 -0.79 10.48 16 34 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -81.93 353.78 -5.07 -87.00 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -1.38 Total: 12.18 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 4.96 Total: 2.54 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.72 Total: -107.24 kcal Atomic # 8 Polarization: -65.00 SS G_CDS: -4.62 Total: -69.62 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 30.25 SS G_CDS: -0.34 Total: 29.91 kcal Total: -81.93 -5.07 -87.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619760359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.853 kcal (2) G-P(sol) polarization free energy of solvation -81.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds