Wall clock time and date at job start Fri Apr 10 2020 14:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42101 * 110.54753 * 2 1 4 4 O 1.42101 * 110.54022 * 223.24846 * 2 1 3 5 5 N 1.65597 * 104.45064 * 111.62830 * 2 1 3 6 6 C 1.46499 * 120.00375 * 64.99421 * 5 2 1 7 7 H 1.09002 * 109.49790 * 335.06906 * 6 5 2 8 8 C 1.53042 * 109.50044 * 215.00477 * 6 5 2 9 9 C 1.53039 * 109.53809 * 178.64997 * 8 6 5 10 10 C 1.53194 * 109.30914 * 61.36696 * 9 8 6 11 11 N 1.46924 * 108.77629 * 305.35770 * 10 9 8 12 12 C 1.34778 * 120.63399 * 233.33703 * 11 10 9 13 13 O 1.21586 * 119.99774 * 174.77292 * 12 11 10 14 14 N 1.34775 * 119.99830 * 354.76949 * 12 11 10 15 15 C 1.46501 * 119.99898 * 184.97674 * 14 12 11 16 16 C 1.50694 * 109.47020 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00092 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00050 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00079 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99732 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47106 * 90.00234 * 20 18 16 22 22 H 1.48506 * 109.47182 * 209.99953 * 20 18 16 23 23 H 1.48497 * 109.47571 * 330.00154 * 20 18 16 24 24 C 1.46928 * 118.73662 * 53.61384 * 11 10 9 25 25 H 1.09003 * 109.46786 * 308.37862 * 1 2 3 26 26 H 1.09000 * 109.47225 * 68.37425 * 1 2 3 27 27 H 1.08997 * 109.47254 * 188.37759 * 1 2 3 28 28 H 0.97005 * 119.99714 * 244.99807 * 5 2 1 29 29 H 1.09002 * 109.45783 * 58.62696 * 8 6 5 30 30 H 1.09001 * 109.45488 * 298.67173 * 8 6 5 31 31 H 1.08990 * 109.49851 * 301.41264 * 9 8 6 32 32 H 1.08999 * 109.49332 * 181.31253 * 9 8 6 33 33 H 1.09004 * 109.58232 * 185.57801 * 10 9 8 34 34 H 1.08994 * 109.70924 * 65.22476 * 10 9 8 35 35 H 0.97001 * 120.00047 * 4.98290 * 14 12 11 36 36 H 1.08999 * 109.47004 * 300.00483 * 15 14 12 37 37 H 1.08999 * 109.46827 * 60.00446 * 15 14 12 38 38 H 0.97001 * 120.00039 * 179.97438 * 19 18 16 39 39 H 1.09008 * 109.58549 * 66.17897 * 24 11 10 40 40 H 1.08993 * 109.58912 * 186.59763 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5911 1.4907 6 6 1.8907 -1.9707 1.8508 7 1 1.0350 -2.3018 1.2624 8 6 1.5444 -2.0400 3.3399 9 6 1.1601 -3.4745 3.7097 10 6 2.3508 -4.4017 3.4465 11 7 2.7824 -4.2331 2.0523 12 6 2.8997 -5.2992 1.2360 13 8 3.1652 -5.1383 0.0604 14 7 2.7229 -6.5434 1.7229 15 6 2.9570 -7.7064 0.8634 16 6 2.6904 -8.9685 1.6425 17 1 2.3774 -8.9102 2.6744 18 6 2.8460 -10.1978 1.0377 19 7 2.6128 -11.2992 1.7175 20 14 3.3865 -10.2987 -0.7474 21 1 4.8689 -10.3564 -0.8132 22 1 2.8156 -11.5205 -1.3693 23 1 2.9049 -9.0996 -1.4791 24 6 3.0896 -2.8809 1.5665 25 1 -0.3633 0.6381 0.8056 26 1 -0.3634 0.3787 -0.9553 27 1 -0.3633 -1.0167 0.1497 28 1 2.6921 -0.0237 2.1255 29 1 0.7071 -1.3742 3.5493 30 1 2.4087 -1.7323 3.9284 31 1 0.3113 -3.7914 3.1039 32 1 0.8911 -3.5184 4.7650 33 1 2.0520 -5.4365 3.6139 34 1 3.1714 -4.1455 4.1166 35 1 2.4406 -6.6688 2.6424 36 1 2.2890 -7.6628 0.0032 37 1 3.9917 -7.7024 0.5205 38 1 2.7219 -12.1641 1.2919 39 1 3.9697 -2.4981 2.0833 40 1 3.2784 -2.9123 0.4935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787355461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:41 Heat of formation + Delta-G solvation = -126.988373 kcal Electronic energy + Delta-G solvation = -23734.580547 eV Core-core repulsion = 20096.450851 eV Total energy + Delta-G solvation = -3638.129695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40444 -39.02965 -38.10920 -37.00912 -36.23748 -35.79708 -34.34271 -33.07959 -30.65757 -30.28754 -29.40396 -26.32311 -24.23233 -23.70773 -22.12076 -20.92285 -20.39808 -19.44558 -18.58202 -18.42003 -17.55213 -17.34166 -17.07944 -16.54728 -16.36023 -15.84167 -15.51391 -15.32886 -15.04958 -14.65063 -14.48531 -14.35195 -14.07323 -13.95106 -13.87007 -13.79642 -13.20046 -13.16771 -13.06139 -12.98418 -12.71301 -12.65046 -12.09768 -11.95276 -11.88886 -11.84621 -11.60367 -11.53101 -11.16230 -10.90969 -10.68727 -10.08268 -9.37316 -8.39305 -6.45438 -0.67855 1.33282 1.35596 1.49532 1.58015 1.90484 2.18162 2.29455 2.87869 2.96442 3.14595 3.29296 3.68732 3.84832 3.90106 4.04981 4.07567 4.15936 4.26904 4.44881 4.57910 4.59656 4.75051 4.89421 4.91186 4.96493 5.01659 5.05833 5.13002 5.22727 5.26302 5.45888 5.55785 5.64066 5.93208 6.16558 6.21235 6.55539 7.10711 7.21093 7.65143 8.75216 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.003384 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.147594 B = 8271.356888 C = 9043.006862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.613 3.387 3 O -0.995 6.995 4 O -1.005 7.005 5 N -1.100 6.100 6 C 0.143 3.857 7 H 0.088 0.912 8 C -0.116 4.116 9 C -0.128 4.128 10 C 0.097 3.903 11 N -0.624 5.624 12 C 0.692 3.308 13 O -0.643 6.643 14 N -0.720 5.720 15 C 0.250 3.750 16 C -0.542 4.542 17 H 0.062 0.938 18 C 0.030 3.970 19 N -0.929 5.929 20 Si 0.934 3.066 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.264 1.264 24 C 0.104 3.896 25 H 0.160 0.840 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.429 0.571 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.404 0.596 36 H 0.008 0.992 37 H 0.006 0.994 38 H 0.273 0.727 39 H 0.083 0.917 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 25.705 7.145 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.709 3.291 3 O -0.986 6.986 4 O -0.995 6.995 5 N -0.860 5.860 6 C 0.034 3.966 7 H 0.106 0.894 8 C -0.154 4.154 9 C -0.167 4.167 10 C -0.025 4.025 11 N -0.363 5.363 12 C 0.393 3.607 13 O -0.526 6.526 14 N -0.376 5.376 15 C 0.126 3.874 16 C -0.580 4.580 17 H 0.080 0.920 18 C -0.170 4.170 19 N -0.568 5.568 20 Si 0.758 3.242 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.189 1.189 24 C -0.021 4.021 25 H 0.178 0.822 26 H 0.160 0.840 27 H 0.158 0.842 28 H 0.266 0.734 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.242 0.758 36 H 0.026 0.974 37 H 0.024 0.976 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.597 25.758 5.487 27.150 hybrid contribution -0.011 -0.703 -0.107 0.711 sum -6.608 25.055 5.380 26.464 Atomic orbital electron populations 1.30325 1.23184 1.13338 1.13702 1.04504 0.79367 0.72299 0.72911 1.93567 1.79903 1.38949 1.86134 1.93641 1.79126 1.62641 1.64070 1.55297 1.74609 1.20001 1.36110 1.21122 0.96061 0.79808 0.99612 0.89436 1.21851 1.04227 0.97350 0.92008 1.21931 0.96648 0.94033 1.04068 1.22034 0.98787 1.01230 0.80467 1.47224 1.71707 1.04988 1.12335 1.16229 0.78334 0.81588 0.84557 1.90857 1.58744 1.85673 1.17292 1.45260 1.72242 1.03667 1.16477 1.18952 0.94898 0.83018 0.90564 1.21230 1.47604 0.89766 0.99444 0.91994 1.25510 0.94390 0.95077 1.02047 1.69962 1.49556 0.98417 1.38839 0.85916 0.79495 0.78375 0.80457 1.19074 1.19597 1.18858 1.22080 0.98802 0.80249 1.00930 0.82208 0.83980 0.84246 0.73383 0.87782 0.89233 0.91746 0.86996 0.90493 0.89208 0.75754 0.97394 0.97625 0.91805 0.89931 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.55 10.78 113.37 1.22 -3.33 16 2 S 2.61 43.07 6.02 -56.49 -0.34 42.73 16 3 O -1.00 -22.12 18.08 -127.65 -2.31 -24.43 16 4 O -1.00 -28.96 17.25 -127.65 -2.20 -31.16 16 5 N -1.10 -13.34 5.36 -169.06 -0.91 -14.24 16 6 C 0.14 2.19 2.71 45.07 0.12 2.31 16 7 H 0.09 1.35 7.15 -2.39 -0.02 1.34 16 8 C -0.12 -0.94 5.41 30.62 0.17 -0.77 16 9 C -0.13 -1.42 6.08 30.67 0.19 -1.23 16 10 C 0.10 1.80 6.38 86.36 0.55 2.35 16 11 N -0.62 -17.94 2.97 -836.91 -2.49 -20.43 16 12 C 0.69 28.56 8.29 179.05 1.49 30.04 16 13 O -0.64 -32.87 15.77 -3.99 -0.06 -32.93 16 14 N -0.72 -30.44 5.46 -482.31 -2.63 -33.07 16 15 C 0.25 12.80 4.50 85.63 0.39 13.18 16 16 C -0.54 -30.24 9.83 25.60 0.25 -29.99 16 17 H 0.06 3.57 7.84 -2.91 -0.02 3.55 16 18 C 0.03 1.73 5.47 84.66 0.46 2.19 16 19 N -0.93 -55.40 13.96 21.45 0.30 -55.10 16 20 Si 0.93 44.99 27.47 68.60 1.88 46.87 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.26 -12.86 6.54 99.48 0.65 -12.21 16 24 C 0.10 2.66 6.05 86.36 0.52 3.18 16 25 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.14 0.83 7.44 -2.39 -0.02 0.81 16 28 H 0.43 3.19 8.80 -96.74 -0.85 2.34 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.57 5.65 -2.38 -0.01 1.56 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.40 14.68 5.81 -92.71 -0.54 14.14 16 36 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 37 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.07 2.31 6.42 -2.39 -0.02 2.30 16 Total: -1.00 -88.30 335.94 -3.77 -92.07 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -0.37 Total: 11.76 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 5.35 Total: 17.94 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -5.73 Total: -122.85 kcal Atomic # 8 Polarization: -83.96 SS G_CDS: -4.57 Total: -88.53 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Atomic # 16 Polarization: 43.07 SS G_CDS: -0.34 Total: 42.73 kcal Total: -88.30 -3.77 -92.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787355461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.917 kcal (2) G-P(sol) polarization free energy of solvation -88.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds