Wall clock time and date at job start Fri Apr 10 2020 14:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42100 * 110.54787 * 2 1 4 4 O 1.42102 * 110.54129 * 223.24986 * 2 1 3 5 5 N 1.65600 * 104.45059 * 111.62671 * 2 1 3 6 6 C 1.46498 * 119.99972 * 64.99359 * 5 2 1 7 7 H 1.08991 * 109.50042 * 24.94223 * 6 5 2 8 8 C 1.53042 * 109.49471 * 145.00482 * 6 5 2 9 9 C 1.53039 * 109.53855 * 181.31765 * 8 6 5 10 10 C 1.53194 * 109.31202 * 298.63240 * 9 8 6 11 11 N 1.46929 * 108.77155 * 54.63594 * 10 9 8 12 12 C 1.34778 * 120.62788 * 126.37278 * 11 10 9 13 13 O 1.21588 * 119.99556 * 185.21721 * 12 11 10 14 14 N 1.34777 * 120.00397 * 4.94372 * 12 11 10 15 15 C 1.46499 * 119.99984 * 175.29922 * 14 12 11 16 16 C 1.50700 * 109.46751 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00550 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99662 * 179.97438 * 16 15 14 19 19 N 1.31524 * 119.99730 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00160 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47278 * 90.00022 * 20 18 16 22 22 H 1.48505 * 109.47352 * 209.99788 * 20 18 16 23 23 H 1.48496 * 109.47089 * 329.99843 * 20 18 16 24 24 C 1.46919 * 118.73929 * 306.64088 * 11 10 9 25 25 H 1.09007 * 109.46604 * 308.38036 * 1 2 3 26 26 H 1.09002 * 109.46805 * 68.37179 * 1 2 3 27 27 H 1.08998 * 109.47497 * 188.37510 * 1 2 3 28 28 H 0.97000 * 119.99743 * 245.00081 * 5 2 1 29 29 H 1.08997 * 109.46231 * 61.29768 * 8 6 5 30 30 H 1.09004 * 109.45864 * 301.33192 * 8 6 5 31 31 H 1.09003 * 109.50063 * 178.68239 * 9 8 6 32 32 H 1.09007 * 109.49620 * 58.58336 * 9 8 6 33 33 H 1.09000 * 109.58928 * 294.84496 * 10 9 8 34 34 H 1.08997 * 109.58767 * 174.41971 * 10 9 8 35 35 H 0.96996 * 119.99708 * 355.28919 * 14 12 11 36 36 H 1.09001 * 109.46878 * 299.99465 * 15 14 12 37 37 H 1.08999 * 109.47612 * 59.99688 * 15 14 12 38 38 H 0.96999 * 119.99424 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.58945 * 173.15035 * 24 11 10 40 40 H 1.09008 * 109.58494 * 293.57116 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4907 6 6 1.8907 -1.9706 1.8508 7 1 1.7953 -2.5700 0.9454 8 6 2.9967 -2.5522 2.7342 9 6 2.6622 -4.0041 3.0839 10 6 1.3459 -4.0463 3.8665 11 7 0.3087 -3.3595 3.0847 12 6 -0.8562 -3.9744 2.7995 13 8 -1.6672 -3.4334 2.0730 14 7 -1.1198 -5.1914 3.3152 15 6 -2.4261 -5.8151 3.0901 16 6 -2.4636 -7.1609 3.7672 17 1 -1.6005 -7.5163 4.3105 18 6 -3.5998 -7.9384 3.6932 19 7 -3.6323 -9.1132 4.2837 20 14 -5.0928 -7.3235 2.7542 21 1 -5.0016 -7.7608 1.3379 22 1 -6.3262 -7.8804 3.3657 23 1 -5.1378 -5.8403 2.8124 24 6 0.5679 -1.9919 2.6146 25 1 -0.3633 0.6381 0.8057 26 1 -0.3633 0.3788 -0.9553 27 1 -0.3634 -1.0167 0.1497 28 1 2.6920 -0.0237 2.1255 29 1 3.0752 -1.9669 3.6503 30 1 3.9454 -2.5172 2.1986 31 1 3.4616 -4.4250 3.6937 32 1 2.5591 -4.5846 2.1670 33 1 1.4743 -3.5433 4.8249 34 1 1.0523 -5.0829 4.0321 35 1 -0.4444 -5.6544 3.8352 36 1 -3.2086 -5.1788 3.5037 37 1 -2.5888 -5.9418 2.0198 38 1 -4.4317 -9.6600 4.2319 39 1 -0.2388 -1.6732 1.9545 40 1 0.6316 -1.3178 3.4689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787355463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:43 Heat of formation + Delta-G solvation = -126.575284 kcal Electronic energy + Delta-G solvation = -23797.092755 eV Core-core repulsion = 20158.980972 eV Total energy + Delta-G solvation = -3638.111782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42894 -39.05784 -38.15856 -37.06754 -36.23352 -35.81012 -34.33553 -33.14753 -30.76712 -30.24769 -29.41288 -26.32964 -24.24629 -23.70979 -22.13909 -20.93441 -20.44795 -19.44799 -18.65226 -18.42109 -17.53934 -17.39061 -17.13766 -16.53891 -16.39728 -15.87808 -15.53895 -15.35536 -15.10672 -14.63224 -14.54690 -14.35649 -14.10773 -13.99686 -13.90140 -13.78547 -13.25424 -13.16225 -13.14385 -13.00651 -12.69873 -12.63306 -12.11164 -11.93142 -11.89150 -11.88808 -11.61709 -11.59502 -11.16860 -10.90224 -10.71026 -10.07367 -9.38317 -8.38335 -6.44911 -0.71554 1.34707 1.36734 1.49243 1.53001 1.90736 2.17324 2.30001 2.81086 2.97574 3.11964 3.24053 3.65744 3.82852 3.88541 4.00575 4.05649 4.11681 4.27004 4.42745 4.52410 4.55687 4.73765 4.80136 4.88611 4.96269 5.01007 5.07261 5.10615 5.21324 5.27210 5.42268 5.55776 5.60981 5.92205 6.14851 6.20693 6.56730 7.09672 7.20774 7.63287 8.76332 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.003436 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.800032 B = 8146.142953 C = 8987.623548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.668 4.668 2 S 2.631 3.369 3 O -0.989 6.989 4 O -0.999 6.999 5 N -1.098 6.098 6 C 0.134 3.866 7 H 0.079 0.921 8 C -0.115 4.115 9 C -0.130 4.130 10 C 0.101 3.899 11 N -0.625 5.625 12 C 0.695 3.305 13 O -0.640 6.640 14 N -0.722 5.722 15 C 0.251 3.749 16 C -0.544 4.544 17 H 0.059 0.941 18 C 0.027 3.973 19 N -0.931 5.931 20 Si 0.937 3.063 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.259 1.259 24 C 0.100 3.900 25 H 0.152 0.848 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.431 0.569 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.403 0.597 36 H 0.011 0.989 37 H 0.008 0.992 38 H 0.272 0.728 39 H 0.082 0.918 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.337 18.400 -1.744 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.726 3.274 3 O -0.979 6.979 4 O -0.989 6.989 5 N -0.859 5.859 6 C 0.025 3.975 7 H 0.098 0.902 8 C -0.154 4.154 9 C -0.169 4.169 10 C -0.022 4.022 11 N -0.362 5.362 12 C 0.396 3.604 13 O -0.523 6.523 14 N -0.378 5.378 15 C 0.126 3.874 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.173 4.173 19 N -0.570 5.570 20 Si 0.761 3.239 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.025 4.025 25 H 0.171 0.829 26 H 0.163 0.837 27 H 0.144 0.856 28 H 0.268 0.732 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.241 0.759 36 H 0.029 0.971 37 H 0.026 0.974 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.155 18.776 -3.016 23.706 hybrid contribution -1.131 -0.462 0.352 1.272 sum 13.024 18.314 -2.664 22.630 Atomic orbital electron populations 1.30561 1.25272 1.12550 1.13586 1.03987 0.78104 0.72365 0.72931 1.93574 1.79340 1.38819 1.86194 1.93575 1.78680 1.62790 1.63823 1.55254 1.73926 1.20690 1.35997 1.21083 0.95123 0.81892 0.99398 0.90241 1.21771 0.97343 0.95872 1.00430 1.21929 0.96968 0.96952 1.01004 1.21982 0.87215 0.97727 0.95228 1.47185 1.15171 1.16226 1.57665 1.16149 0.82568 0.81375 0.80275 1.90807 1.50067 1.67921 1.43501 1.45298 1.17952 1.17587 1.56948 1.18952 0.81432 0.91700 0.95274 1.21262 1.01477 1.01132 1.34341 0.92273 1.25568 1.01382 0.94596 0.95757 1.69982 1.30475 1.11843 1.44698 0.85864 0.79068 0.79627 0.79354 1.19170 1.19880 1.18339 1.22178 0.97548 0.82229 1.00577 0.82944 0.83740 0.85582 0.73197 0.88466 0.89880 0.87301 0.92526 0.88571 0.90495 0.75854 0.97071 0.97397 0.91870 0.89956 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -8.77 10.18 113.37 1.15 -7.62 16 2 S 2.63 44.16 6.08 -56.49 -0.34 43.82 16 3 O -0.99 -21.67 18.08 -127.65 -2.31 -23.98 16 4 O -1.00 -25.54 17.39 -127.65 -2.22 -27.76 16 5 N -1.10 -13.54 5.36 -169.68 -0.91 -14.45 16 6 C 0.13 2.11 2.83 44.93 0.13 2.24 16 7 H 0.08 1.60 7.48 -2.39 -0.02 1.58 16 8 C -0.12 -1.30 5.42 30.62 0.17 -1.13 16 9 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 10 C 0.10 1.77 6.39 86.36 0.55 2.33 16 11 N -0.62 -15.72 2.98 -837.74 -2.49 -18.22 16 12 C 0.70 25.72 8.30 179.05 1.49 27.20 16 13 O -0.64 -28.32 15.77 -3.99 -0.06 -28.38 16 14 N -0.72 -28.66 5.46 -482.30 -2.63 -31.30 16 15 C 0.25 12.20 4.50 85.63 0.39 12.58 16 16 C -0.54 -29.61 9.83 25.60 0.25 -29.36 16 17 H 0.06 3.37 7.84 -2.91 -0.02 3.34 16 18 C 0.03 1.52 5.47 84.65 0.46 1.99 16 19 N -0.93 -54.96 13.96 21.45 0.30 -54.66 16 20 Si 0.94 43.60 27.47 68.60 1.88 45.49 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.26 -11.91 6.54 99.48 0.65 -11.26 16 24 C 0.10 1.92 5.94 86.22 0.51 2.43 16 25 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.13 2.07 6.69 -2.39 -0.02 2.05 16 28 H 0.43 3.13 8.80 -96.75 -0.85 2.28 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.52 5.64 -2.39 -0.01 1.50 16 35 H 0.40 14.00 5.81 -92.71 -0.54 13.47 16 36 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 37 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 38 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 39 H 0.08 1.84 4.77 -2.39 -0.01 1.83 16 40 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -80.59 333.48 -3.87 -84.46 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -0.37 Total: 15.86 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.28 Total: 9.11 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -5.74 Total: -118.62 kcal Atomic # 8 Polarization: -75.53 SS G_CDS: -4.59 Total: -80.12 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Atomic # 16 Polarization: 44.16 SS G_CDS: -0.34 Total: 43.82 kcal Total: -80.59 -3.87 -84.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787355463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.111 kcal (2) G-P(sol) polarization free energy of solvation -80.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds