Wall clock time and date at job start Fri Apr 10 2020 14:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41601 * 114.00175 * 2 1 4 4 C 1.29338 * 119.99935 * 179.97438 * 3 2 1 5 5 C 1.47610 * 119.99610 * 180.02562 * 4 3 2 6 6 C 1.39728 * 119.99987 * 180.02562 * 5 4 3 7 7 C 1.37656 * 119.99216 * 180.30152 * 6 5 4 8 8 C 1.39689 * 120.00326 * 359.46663 * 7 6 5 9 9 C 1.47796 * 119.99204 * 180.26038 * 8 7 6 10 10 O 1.21563 * 119.99745 * 180.25112 * 9 8 7 11 11 N 1.34781 * 120.00410 * 0.24717 * 9 8 7 12 12 C 1.46498 * 119.99814 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.46708 * 179.97438 * 12 11 9 14 14 O 1.21289 * 119.99997 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99963 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99871 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00273 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00104 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99538 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00373 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46633 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47150 * 119.99520 * 20 18 16 23 23 H 1.48499 * 109.46741 * 239.99475 * 20 18 16 24 24 C 1.39688 * 120.00763 * 0.50519 * 8 7 6 25 25 C 1.37651 * 120.00392 * 359.77366 * 24 8 7 26 26 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46389 * 299.99220 * 1 2 3 28 28 H 1.08996 * 109.47032 * 59.99739 * 1 2 3 29 29 H 1.08002 * 119.99841 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.00010 * 0.02562 * 6 5 4 31 31 H 1.08004 * 119.99380 * 179.72118 * 7 6 5 32 32 H 0.97001 * 119.99521 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47243 * 300.00055 * 12 11 9 34 34 H 1.08997 * 109.47541 * 60.00125 * 12 11 9 35 35 H 0.96996 * 119.99739 * 0.02562 * 15 13 12 36 36 H 0.97009 * 119.99847 * 180.02562 * 19 18 16 37 37 H 1.08002 * 119.99460 * 179.75166 * 24 8 7 38 38 H 1.08007 * 120.00042 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 3.2913 1.4287 0.0005 5 6 3.8917 2.7772 0.0011 6 6 5.2813 2.9233 0.0011 7 6 5.8410 4.1809 0.0079 8 6 5.0198 5.3110 0.0035 9 6 5.6211 6.6611 0.0050 10 8 4.9066 7.6446 0.0058 11 7 6.9615 6.8020 0.0055 12 6 7.5573 8.1404 0.0076 13 6 9.0596 8.0213 0.0084 14 8 9.5812 6.9263 0.0069 15 7 9.8236 9.1317 0.0098 16 6 11.1903 9.0234 0.0100 17 1 11.6547 8.0483 0.0095 18 6 11.9779 10.1680 0.0119 19 7 11.4127 11.3545 0.0130 20 14 13.8401 10.0205 0.0115 21 1 14.2229 8.5858 0.0096 22 1 14.3887 10.6813 -1.1999 23 1 14.3889 10.6773 1.2251 24 6 3.6306 5.1650 0.0029 25 6 3.0706 3.9076 0.0019 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.9261 0.5549 0.0005 30 1 5.9161 2.0496 0.0002 31 1 6.9151 4.2939 0.0124 32 1 7.5316 6.0172 0.0046 33 1 7.2359 8.6825 -0.8817 34 1 7.2355 8.6800 0.8982 35 1 9.4064 10.0074 0.0106 36 1 11.9626 12.1536 0.0140 37 1 2.9959 6.0389 0.0036 38 1 1.9964 3.7949 0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804819896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:13 Heat of formation + Delta-G solvation = -31.478363 kcal Electronic energy + Delta-G solvation = -22667.680653 eV Core-core repulsion = 18898.248632 eV Total energy + Delta-G solvation = -3769.432022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28244 -38.89081 -38.08963 -37.65364 -34.63983 -34.51499 -33.76939 -31.45561 -31.30354 -30.95292 -27.89044 -26.81532 -24.97701 -24.16099 -22.72185 -21.36694 -20.12324 -19.69560 -18.38185 -17.87646 -17.70459 -16.52452 -15.91884 -15.61692 -15.56865 -15.34786 -15.19943 -14.97690 -14.50902 -14.38854 -14.01463 -13.90329 -13.78170 -13.29167 -13.26528 -12.77684 -12.25854 -12.24780 -12.21948 -11.91592 -11.66448 -11.36494 -11.16716 -10.43212 -10.40769 -10.35492 -10.35080 -9.92838 -9.68014 -9.27737 -8.99002 -8.73180 -8.68138 -8.13581 -6.54564 -3.96681 0.16694 1.13073 1.82359 2.26883 2.94140 3.08271 3.19133 3.23054 3.29774 3.68378 3.75442 4.08516 4.23111 4.53140 4.65947 4.70251 4.82855 4.96950 4.98569 4.98745 5.07274 5.14039 5.18634 5.24119 5.47746 5.71260 5.73988 5.85242 5.90855 6.01978 6.02373 6.09758 6.18690 6.51554 6.59372 7.05452 7.43398 7.69692 7.88599 8.31063 8.41621 9.01362 9.35582 9.82975 10.62229 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.041658 B = 0.002029 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.978304 B =13796.449777 C =14447.981361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.245 6.245 3 N -0.337 5.337 4 C 0.151 3.849 5 C -0.045 4.045 6 C -0.091 4.091 7 C -0.088 4.088 8 C -0.108 4.108 9 C 0.552 3.448 10 O -0.543 6.543 11 N -0.700 5.700 12 C 0.108 3.892 13 C 0.427 3.573 14 O -0.598 6.598 15 N -0.548 5.548 16 C -0.306 4.306 17 H 0.107 0.893 18 C 0.026 3.974 19 N -0.893 5.893 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.067 4.067 25 C -0.089 4.089 26 H 0.096 0.904 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.411 0.589 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.396 0.604 36 H 0.274 0.726 37 H 0.142 0.858 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.900 -16.738 -0.017 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.260 6.260 3 N -0.082 5.082 4 C -0.059 4.059 5 C -0.046 4.046 6 C -0.111 4.111 7 C -0.107 4.107 8 C -0.112 4.112 9 C 0.338 3.662 10 O -0.422 6.422 11 N -0.354 5.354 12 C -0.020 4.020 13 C 0.213 3.787 14 O -0.485 6.485 15 N -0.182 5.182 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.533 5.533 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.085 4.085 25 C -0.109 4.109 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.250 0.750 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.159 0.841 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.741 -16.361 -0.017 24.134 hybrid contribution 1.380 -0.294 0.001 1.411 sum -16.362 -16.655 -0.016 23.347 Atomic orbital electron populations 1.22728 0.78522 1.02562 1.01327 1.89841 1.22335 1.20150 1.93647 1.76624 1.13884 1.04280 1.13406 1.24304 0.92023 0.96785 0.92775 1.18552 0.93190 0.90228 1.02664 1.21148 0.93109 0.97912 0.98933 1.21378 1.00438 0.91520 0.97362 1.20174 0.94516 0.93096 1.03380 1.18208 0.82181 0.88688 0.77102 1.90770 1.61210 1.39742 1.50440 1.45642 1.06189 1.10142 1.73418 1.21000 0.93051 0.84392 1.03513 1.19710 0.87573 0.85676 0.85758 1.90490 1.73947 1.26548 1.57519 1.41799 1.06907 1.07085 1.62426 1.19787 0.80494 0.94977 1.48237 0.87566 1.25337 1.01098 0.94545 0.96725 1.69626 1.36814 0.97686 1.49219 0.85749 0.81700 0.78747 0.77842 1.19122 1.20599 1.20604 1.21250 0.93642 0.97931 0.95713 1.21325 1.00505 0.91070 0.97974 0.88556 0.93067 0.93072 0.85514 0.84437 0.84326 0.74970 0.89562 0.89571 0.77000 0.91603 0.84057 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.30 11.47 101.05 1.16 1.46 16 2 O -0.25 -2.50 11.72 -11.47 -0.13 -2.63 16 3 N -0.34 -3.49 10.45 32.13 0.34 -3.15 16 4 C 0.15 1.32 10.90 -14.78 -0.16 1.15 16 5 C -0.04 -0.41 5.87 -104.96 -0.62 -1.02 16 6 C -0.09 -0.76 9.77 -39.24 -0.38 -1.15 16 7 C -0.09 -0.91 9.52 -39.25 -0.37 -1.28 16 8 C -0.11 -1.34 5.88 -104.91 -0.62 -1.96 16 9 C 0.55 8.63 7.77 -12.35 -0.10 8.53 16 10 O -0.54 -9.98 16.33 5.31 0.09 -9.89 16 11 N -0.70 -11.30 5.48 -62.45 -0.34 -11.64 16 12 C 0.11 1.93 6.15 -5.19 -0.03 1.90 16 13 C 0.43 9.52 7.85 -10.98 -0.09 9.43 16 14 O -0.60 -14.80 15.24 5.55 0.08 -14.72 16 15 N -0.55 -13.28 5.29 -10.96 -0.06 -13.34 16 16 C -0.31 -8.15 9.68 -14.93 -0.14 -8.30 16 17 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.51 13.05 55.50 0.72 -22.79 16 20 Si 0.93 20.22 29.55 -169.99 -5.02 15.19 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 C -0.07 -0.75 9.58 -39.25 -0.38 -1.12 16 25 C -0.09 -0.87 9.56 -39.24 -0.38 -1.25 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 30 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.14 1.32 6.38 -52.48 -0.34 0.99 16 32 H 0.41 6.35 5.45 -40.82 -0.22 6.13 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.14 1.57 7.64 -52.49 -0.40 1.17 16 38 H 0.14 1.23 7.54 -52.48 -0.40 0.83 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -32.19 345.13 -5.47 -37.66 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.15 Total: 13.15 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -2.20 Total: 6.97 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.66 Total: -50.92 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: 0.04 Total: -27.24 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.19 -5.47 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804819896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.180 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds