Wall clock time and date at job start Fri Apr 10 2020 14:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41601 * 114.00175 * 2 1 4 4 C 1.29338 * 119.99935 * 179.97438 * 3 2 1 5 5 C 1.47610 * 119.99610 * 180.02562 * 4 3 2 6 6 C 1.39728 * 119.99987 * 180.02562 * 5 4 3 7 7 C 1.37656 * 119.99216 * 180.30152 * 6 5 4 8 8 C 1.39689 * 120.00326 * 359.46663 * 7 6 5 9 9 C 1.47796 * 119.99204 * 180.26038 * 8 7 6 10 10 O 1.21563 * 119.99745 * 180.25112 * 9 8 7 11 11 N 1.34781 * 120.00410 * 0.24717 * 9 8 7 12 12 C 1.46498 * 119.99814 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.46708 * 179.97438 * 12 11 9 14 14 O 1.21289 * 119.99997 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99963 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99871 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00273 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00104 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99538 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00373 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46633 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47150 * 119.99520 * 20 18 16 23 23 H 1.48499 * 109.46741 * 239.99475 * 20 18 16 24 24 C 1.39688 * 120.00763 * 0.50519 * 8 7 6 25 25 C 1.37651 * 120.00392 * 359.77366 * 24 8 7 26 26 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46389 * 299.99220 * 1 2 3 28 28 H 1.08996 * 109.47032 * 59.99739 * 1 2 3 29 29 H 1.08002 * 119.99841 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.00010 * 0.02562 * 6 5 4 31 31 H 1.08004 * 119.99380 * 179.72118 * 7 6 5 32 32 H 0.97001 * 119.99521 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47243 * 300.00055 * 12 11 9 34 34 H 1.08997 * 109.47541 * 60.00125 * 12 11 9 35 35 H 0.96996 * 119.99739 * 0.02562 * 15 13 12 36 36 H 0.97009 * 119.99847 * 180.02562 * 19 18 16 37 37 H 1.08002 * 119.99460 * 179.75166 * 24 8 7 38 38 H 1.08007 * 120.00042 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 3.2913 1.4287 0.0005 5 6 3.8917 2.7772 0.0011 6 6 5.2813 2.9233 0.0011 7 6 5.8410 4.1809 0.0079 8 6 5.0198 5.3110 0.0035 9 6 5.6211 6.6611 0.0050 10 8 4.9066 7.6446 0.0058 11 7 6.9615 6.8020 0.0055 12 6 7.5573 8.1404 0.0076 13 6 9.0596 8.0213 0.0084 14 8 9.5812 6.9263 0.0069 15 7 9.8236 9.1317 0.0098 16 6 11.1903 9.0234 0.0100 17 1 11.6547 8.0483 0.0095 18 6 11.9779 10.1680 0.0119 19 7 11.4127 11.3545 0.0130 20 14 13.8401 10.0205 0.0115 21 1 14.2229 8.5858 0.0096 22 1 14.3887 10.6813 -1.1999 23 1 14.3889 10.6773 1.2251 24 6 3.6306 5.1650 0.0029 25 6 3.0706 3.9076 0.0019 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.9261 0.5549 0.0005 30 1 5.9161 2.0496 0.0002 31 1 6.9151 4.2939 0.0124 32 1 7.5316 6.0172 0.0046 33 1 7.2359 8.6825 -0.8817 34 1 7.2355 8.6800 0.8982 35 1 9.4064 10.0074 0.0106 36 1 11.9626 12.1536 0.0140 37 1 2.9959 6.0389 0.0036 38 1 1.9964 3.7949 0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804819896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:12 Heat of formation + Delta-G solvation = -54.216140 kcal Electronic energy + Delta-G solvation = -22668.666637 eV Core-core repulsion = 18898.248632 eV Total energy + Delta-G solvation = -3770.418006 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40704 -40.24793 -39.44778 -38.39318 -36.27786 -35.48526 -35.22388 -33.37476 -32.10024 -31.87044 -29.29521 -27.52384 -26.53556 -25.27448 -23.55100 -22.32008 -21.39994 -21.10170 -20.11853 -19.25887 -18.43189 -17.59980 -17.12389 -17.01714 -16.77523 -16.48568 -16.23271 -16.05013 -15.83162 -15.52458 -15.51628 -15.26480 -14.67560 -14.43900 -14.13225 -13.91262 -13.58899 -13.54316 -13.28885 -13.07150 -12.91580 -12.80589 -12.43311 -12.13152 -12.10053 -11.57069 -11.19930 -11.11618 -11.00973 -10.55786 -10.29212 -10.08348 -10.04667 -9.60040 -8.50345 -6.00400 -0.66133 0.36374 1.03012 1.36128 1.44383 1.58141 1.63533 1.88092 1.94854 1.94911 2.31885 2.85754 3.10974 3.17133 3.50508 3.70755 3.80569 3.94188 4.19490 4.26134 4.31986 4.42327 4.42821 4.44764 4.50108 4.55014 4.70019 4.77667 5.00345 5.05883 5.17855 5.25265 5.29369 5.39776 5.42852 5.76214 5.92506 6.40704 6.42642 6.49901 7.03826 7.06294 7.44800 7.94467 8.66655 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.041658 B = 0.002029 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.978304 B =13796.449777 C =14447.981361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.262 6.262 3 N -0.360 5.360 4 C 0.155 3.845 5 C -0.039 4.039 6 C -0.077 4.077 7 C -0.088 4.088 8 C -0.128 4.128 9 C 0.554 3.446 10 O -0.576 6.576 11 N -0.700 5.700 12 C 0.119 3.881 13 C 0.433 3.567 14 O -0.622 6.622 15 N -0.559 5.559 16 C -0.336 4.336 17 H 0.088 0.912 18 C -0.011 4.011 19 N -0.916 5.916 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.072 4.072 25 C -0.090 4.090 26 H 0.121 0.879 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.146 0.854 32 H 0.415 0.585 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.399 0.601 36 H 0.279 0.721 37 H 0.135 0.865 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.835 -18.481 -0.018 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 N -0.106 5.106 4 C -0.054 4.054 5 C -0.041 4.041 6 C -0.097 4.097 7 C -0.107 4.107 8 C -0.132 4.132 9 C 0.343 3.657 10 O -0.457 6.457 11 N -0.354 5.354 12 C -0.008 4.008 13 C 0.220 3.780 14 O -0.510 6.510 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.106 0.894 18 C -0.211 4.211 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.198 1.198 24 C -0.091 4.091 25 C -0.110 4.110 26 H 0.139 0.861 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.171 0.829 30 H 0.192 0.808 31 H 0.163 0.837 32 H 0.255 0.745 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.153 0.847 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.698 -18.112 -0.019 25.323 hybrid contribution 1.246 0.145 0.002 1.255 sum -16.452 -17.968 -0.017 24.362 Atomic orbital electron populations 1.22953 0.77055 1.04244 1.01390 1.89811 1.23984 1.20084 1.93790 1.76599 1.14885 1.04845 1.14244 1.24486 0.92109 0.97155 0.91669 1.18719 0.93555 0.90288 1.01502 1.21468 0.93109 0.98253 0.96866 1.21497 1.00592 0.91581 0.96998 1.19997 0.95089 0.91929 1.06168 1.18670 0.81523 0.89723 0.75810 1.90746 1.61723 1.41187 1.52033 1.45623 1.06591 1.09435 1.73777 1.20828 0.89688 0.85800 1.04512 1.20365 0.89213 0.84754 0.83628 1.90466 1.75122 1.27403 1.58011 1.41847 1.06519 1.07711 1.63359 1.19792 0.81840 0.94678 1.50253 0.89397 1.26128 1.05231 0.93978 0.95801 1.69691 1.38370 0.98198 1.49351 0.84804 0.76395 0.78524 0.78219 1.19324 1.19745 1.19752 1.21226 0.93205 0.98456 0.96228 1.21398 1.01016 0.90791 0.97761 0.86083 0.92998 0.93003 0.82885 0.80844 0.83680 0.74495 0.88533 0.88541 0.76706 0.91112 0.84710 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.47 113.37 1.30 1.77 16 2 O -0.26 -4.90 11.72 -38.79 -0.45 -5.36 16 3 N -0.36 -6.83 10.45 -52.27 -0.55 -7.37 16 4 C 0.16 2.29 10.90 87.54 0.95 3.25 16 5 C -0.04 -0.62 5.87 -20.09 -0.12 -0.74 16 6 C -0.08 -1.06 9.77 22.49 0.22 -0.84 16 7 C -0.09 -1.65 9.52 22.48 0.21 -1.44 16 8 C -0.13 -3.11 5.88 -20.05 -0.12 -3.23 16 9 C 0.55 17.29 7.77 86.77 0.67 17.96 16 10 O -0.58 -21.40 16.33 -3.91 -0.06 -21.46 16 11 N -0.70 -22.37 5.48 -469.75 -2.57 -24.95 16 12 C 0.12 4.25 6.15 85.63 0.53 4.77 16 13 C 0.43 19.43 7.85 87.66 0.69 20.12 16 14 O -0.62 -30.95 15.24 -3.06 -0.05 -31.00 16 15 N -0.56 -27.49 5.29 -306.98 -1.62 -29.12 16 16 C -0.34 -18.19 9.68 84.04 0.81 -17.38 16 17 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 18 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 19 N -0.92 -48.09 13.05 21.66 0.28 -47.81 16 20 Si 1.00 41.13 29.55 68.60 2.03 43.16 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 C -0.07 -1.60 9.58 22.48 0.22 -1.39 16 25 C -0.09 -1.66 9.56 22.49 0.21 -1.44 16 26 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.15 2.51 6.38 -2.91 -0.02 2.49 16 32 H 0.42 12.62 5.45 -92.71 -0.51 12.11 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 36 H 0.28 13.71 8.31 -92.70 -0.77 12.94 16 37 H 0.14 3.09 7.64 -2.91 -0.02 3.07 16 38 H 0.14 2.44 7.54 -2.91 -0.02 2.42 16 Total: -1.00 -69.04 345.13 2.94 -66.10 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -0.12 Total: 36.47 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 6.05 Total: 21.33 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.46 Total: -109.25 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -0.57 Total: -57.82 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -69.04 2.94 -66.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804819896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.885 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds