Wall clock time and date at job start Fri Apr 10 2020 14:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.54001 * 2 1 4 4 O 1.42094 * 110.54459 * 223.24974 * 2 1 3 5 5 N 1.65607 * 104.44904 * 111.62498 * 2 1 3 6 6 C 1.46924 * 120.63051 * 269.72253 * 5 2 1 7 7 C 1.53187 * 108.77642 * 126.66488 * 6 5 2 8 8 C 1.53041 * 109.31211 * 54.63373 * 7 6 5 9 9 N 1.46503 * 109.46043 * 178.61144 * 8 7 6 10 10 C 1.34774 * 120.00211 * 275.07188 * 9 8 7 11 11 O 1.21589 * 119.99906 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99690 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47379 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99864 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00690 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99735 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00287 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47049 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47277 * 119.99798 * 18 16 14 21 21 H 1.48505 * 109.46942 * 239.99654 * 18 16 14 22 22 C 1.53038 * 109.53768 * 298.63806 * 8 7 6 23 23 C 1.46926 * 120.62900 * 90.00281 * 5 2 1 24 24 H 1.08995 * 109.47054 * 308.37337 * 1 2 3 25 25 H 1.09000 * 109.46981 * 68.37802 * 1 2 3 26 26 H 1.09002 * 109.46488 * 188.37370 * 1 2 3 27 27 H 1.09003 * 109.58516 * 246.45688 * 6 5 2 28 28 H 1.09002 * 109.58479 * 6.87847 * 6 5 2 29 29 H 1.08999 * 109.49975 * 294.68379 * 7 6 5 30 30 H 1.08998 * 109.50042 * 174.58459 * 7 6 5 31 31 H 1.09007 * 109.44471 * 58.64946 * 8 7 6 32 32 H 0.97000 * 119.99750 * 95.06805 * 9 8 7 33 33 H 0.97000 * 120.00194 * 359.97438 * 12 10 9 34 34 H 1.09010 * 109.47301 * 299.99355 * 13 12 10 35 35 H 1.09000 * 109.47649 * 59.99297 * 13 12 10 36 36 H 0.96994 * 120.00418 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.49677 * 301.40907 * 22 8 7 38 38 H 1.09001 * 109.52131 * 181.33314 * 22 8 7 39 39 H 1.09002 * 109.58798 * 353.11753 * 23 5 2 40 40 H 1.08996 * 109.58781 * 113.40224 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 2.4200 0.3177 2.6292 7 6 1.5419 -0.1555 3.7919 8 6 1.8548 -1.6219 4.0982 9 7 1.0405 -2.0683 5.2314 10 6 1.4620 -1.8477 6.4924 11 8 2.5183 -1.2787 6.6895 12 7 0.7131 -2.2589 7.5347 13 6 1.1715 -2.0196 8.9054 14 6 0.1602 -2.5714 9.8769 15 1 -0.7348 -3.0519 9.5100 16 6 0.3773 -2.4630 11.2341 17 7 1.4669 -1.8775 11.6810 18 14 -0.8766 -3.1463 12.4383 19 1 -2.0065 -3.7497 11.6870 20 1 -0.2351 -4.1833 13.2858 21 1 -1.3854 -2.0485 13.2993 22 6 1.5361 -2.4802 2.8718 23 6 2.4141 -2.0334 1.6987 24 1 -0.3633 0.6379 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3632 -1.0168 0.1497 27 1 3.4667 0.3056 2.9332 28 1 2.1323 1.3291 2.3421 29 1 0.4915 -0.0571 3.5180 30 1 1.7470 0.4520 4.6733 31 1 2.9110 -1.7232 4.3478 32 1 0.1980 -2.5225 5.0740 33 1 -0.1294 -2.7131 7.3774 34 1 2.1309 -2.5140 9.0593 35 1 1.2848 -0.9479 9.0689 36 1 1.6200 -1.8014 12.6358 37 1 0.4857 -2.3600 2.6066 38 1 1.7366 -3.5274 3.0981 39 1 2.1225 -2.5733 0.7978 40 1 3.4607 -2.2375 1.9244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116845312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:17 Heat of formation + Delta-G solvation = -104.138282 kcal Electronic energy + Delta-G solvation = -23247.388722 eV Core-core repulsion = 19610.249881 eV Total energy + Delta-G solvation = -3637.138841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75870 -38.23491 -37.49700 -36.27747 -34.64938 -33.97885 -32.36879 -31.39454 -30.60019 -29.86143 -27.08725 -24.32727 -23.65467 -22.43727 -20.76162 -20.15456 -19.19326 -18.21070 -17.93448 -16.68816 -16.45287 -16.12763 -15.85662 -14.93476 -14.86747 -14.73005 -14.61254 -14.01713 -13.83608 -13.71534 -13.67763 -13.53075 -13.09162 -12.79967 -12.61839 -12.41903 -12.15065 -11.98561 -11.94590 -11.69634 -11.51934 -11.33737 -11.06558 -10.95030 -10.90369 -10.68850 -10.31871 -9.53984 -9.37021 -9.27303 -8.80936 -8.70801 -7.78564 -6.17037 -4.23586 -0.10697 2.24600 3.22505 3.25419 3.30852 3.34738 3.52843 3.75398 3.90965 4.19992 4.31225 4.41367 4.50281 4.65843 4.78422 4.85601 4.97065 5.06107 5.12558 5.19225 5.25440 5.34092 5.43804 5.56088 5.60875 5.73153 5.88843 5.95166 6.14837 6.32250 6.85391 7.10229 7.49749 7.53734 7.55603 7.89201 8.02839 8.75180 8.92749 9.31803 9.46642 10.93260 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.042695 B = 0.002472 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.650784 B =11322.906231 C =11419.080562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.611 3.389 3 O -0.955 6.955 4 O -0.957 6.957 5 N -1.000 6.000 6 C 0.124 3.876 7 C -0.148 4.148 8 C 0.168 3.832 9 N -0.755 5.755 10 C 0.692 3.308 11 O -0.600 6.600 12 N -0.730 5.730 13 C 0.267 3.733 14 C -0.541 4.541 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.143 4.143 23 C 0.126 3.874 24 H 0.128 0.872 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.390 0.610 33 H 0.386 0.614 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 0.735 -23.895 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.704 3.296 3 O -0.945 6.945 4 O -0.948 6.948 5 N -0.838 5.838 6 C -0.001 4.001 7 C -0.188 4.188 8 C 0.062 3.938 9 N -0.411 5.411 10 C 0.392 3.608 11 O -0.479 6.479 12 N -0.382 5.382 13 C 0.146 3.854 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.183 4.183 23 C 0.000 4.000 24 H 0.147 0.853 25 H 0.144 0.856 26 H 0.146 0.854 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.223 0.777 33 H 0.218 0.782 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.443 1.589 -24.142 24.317 hybrid contribution -2.227 -0.890 1.018 2.606 sum -4.670 0.699 -23.124 23.601 Atomic orbital electron populations 1.30599 1.28885 1.11598 1.11309 1.04889 0.77664 0.74026 0.73032 1.93615 1.77502 1.37770 1.85649 1.93604 1.77564 1.61718 1.61876 1.57765 1.84152 1.14528 1.27336 1.21462 1.01230 0.92335 0.85087 1.22400 0.99799 0.97827 0.98785 1.20566 0.96833 0.92231 0.84197 1.45252 1.25658 1.65649 1.04538 1.16177 0.84206 0.80026 0.80378 1.90874 1.23897 1.48598 1.84509 1.45733 1.23802 1.61587 1.07060 1.18974 0.95449 0.96994 0.74004 1.21260 1.06242 1.39392 0.91094 0.91954 1.24949 0.95745 0.95077 0.98300 1.69986 1.25508 1.42263 1.14500 0.86362 0.80979 0.78700 0.80837 1.19698 1.20809 1.20821 1.22243 1.00577 1.00587 0.94898 1.21386 1.00956 0.78950 0.98663 0.85308 0.85632 0.85414 0.90268 0.88950 0.91673 0.89552 0.89231 0.77717 0.78231 0.95772 0.95778 0.92503 0.91140 0.89794 0.88821 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.92 10.99 101.05 1.11 -1.81 16 2 S 2.61 20.48 6.05 -107.50 -0.65 19.83 16 3 O -0.95 -10.81 16.72 -57.54 -0.96 -11.78 16 4 O -0.96 -10.29 16.73 -57.54 -0.96 -11.25 16 5 N -1.00 -7.78 3.22 -113.53 -0.37 -8.15 16 6 C 0.12 1.09 6.31 -3.71 -0.02 1.07 16 7 C -0.15 -1.50 5.65 -26.61 -0.15 -1.65 16 8 C 0.17 1.86 2.42 -67.89 -0.16 1.70 16 9 N -0.75 -10.00 5.08 -58.63 -0.30 -10.30 16 10 C 0.69 13.47 8.53 -86.92 -0.74 12.73 16 11 O -0.60 -14.28 16.01 5.29 0.08 -14.20 16 12 N -0.73 -15.04 5.55 -66.41 -0.37 -15.41 16 13 C 0.27 7.02 5.43 -5.19 -0.03 7.00 16 14 C -0.54 -14.53 9.28 -34.44 -0.32 -14.85 16 15 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.14 -1.04 5.55 -26.62 -0.15 -1.19 16 23 C 0.13 0.89 6.31 -3.71 -0.02 0.87 16 24 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.74 7.10 -51.93 -0.37 0.37 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.21 7.58 -51.92 -0.39 0.82 16 32 H 0.39 4.00 8.62 -40.82 -0.35 3.65 16 33 H 0.39 6.74 8.34 -40.82 -0.34 6.40 16 34 H 0.02 0.71 8.14 -51.92 -0.42 0.28 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.54 7.11 -51.93 -0.37 0.17 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -37.08 343.63 -9.22 -46.30 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.01 Total: 3.85 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.58 Total: 5.51 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.30 Total: -59.05 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.84 Total: -37.23 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 20.48 SS G_CDS: -0.65 Total: 19.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.08 -9.22 -46.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116845312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.834 kcal (2) G-P(sol) polarization free energy of solvation -37.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds