Wall clock time and date at job start Fri Apr 10 2020 14:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.54001 * 2 1 4 4 O 1.42094 * 110.54459 * 223.24974 * 2 1 3 5 5 N 1.65607 * 104.44904 * 111.62498 * 2 1 3 6 6 C 1.46924 * 120.63051 * 269.72253 * 5 2 1 7 7 C 1.53187 * 108.77642 * 126.66488 * 6 5 2 8 8 C 1.53041 * 109.31211 * 54.63373 * 7 6 5 9 9 N 1.46503 * 109.46043 * 178.61144 * 8 7 6 10 10 C 1.34774 * 120.00211 * 275.07188 * 9 8 7 11 11 O 1.21589 * 119.99906 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99690 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47379 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99864 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00690 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99735 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00287 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47049 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47277 * 119.99798 * 18 16 14 21 21 H 1.48505 * 109.46942 * 239.99654 * 18 16 14 22 22 C 1.53038 * 109.53768 * 298.63806 * 8 7 6 23 23 C 1.46926 * 120.62900 * 90.00281 * 5 2 1 24 24 H 1.08995 * 109.47054 * 308.37337 * 1 2 3 25 25 H 1.09000 * 109.46981 * 68.37802 * 1 2 3 26 26 H 1.09002 * 109.46488 * 188.37370 * 1 2 3 27 27 H 1.09003 * 109.58516 * 246.45688 * 6 5 2 28 28 H 1.09002 * 109.58479 * 6.87847 * 6 5 2 29 29 H 1.08999 * 109.49975 * 294.68379 * 7 6 5 30 30 H 1.08998 * 109.50042 * 174.58459 * 7 6 5 31 31 H 1.09007 * 109.44471 * 58.64946 * 8 7 6 32 32 H 0.97000 * 119.99750 * 95.06805 * 9 8 7 33 33 H 0.97000 * 120.00194 * 359.97438 * 12 10 9 34 34 H 1.09010 * 109.47301 * 299.99355 * 13 12 10 35 35 H 1.09000 * 109.47649 * 59.99297 * 13 12 10 36 36 H 0.96994 * 120.00418 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.49677 * 301.40907 * 22 8 7 38 38 H 1.09001 * 109.52131 * 181.33314 * 22 8 7 39 39 H 1.09002 * 109.58798 * 353.11753 * 23 5 2 40 40 H 1.08996 * 109.58781 * 113.40224 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 2.4200 0.3177 2.6292 7 6 1.5419 -0.1555 3.7919 8 6 1.8548 -1.6219 4.0982 9 7 1.0405 -2.0683 5.2314 10 6 1.4620 -1.8477 6.4924 11 8 2.5183 -1.2787 6.6895 12 7 0.7131 -2.2589 7.5347 13 6 1.1715 -2.0196 8.9054 14 6 0.1602 -2.5714 9.8769 15 1 -0.7348 -3.0519 9.5100 16 6 0.3773 -2.4630 11.2341 17 7 1.4669 -1.8775 11.6810 18 14 -0.8766 -3.1463 12.4383 19 1 -2.0065 -3.7497 11.6870 20 1 -0.2351 -4.1833 13.2858 21 1 -1.3854 -2.0485 13.2993 22 6 1.5361 -2.4802 2.8718 23 6 2.4141 -2.0334 1.6987 24 1 -0.3633 0.6379 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3632 -1.0168 0.1497 27 1 3.4667 0.3056 2.9332 28 1 2.1323 1.3291 2.3421 29 1 0.4915 -0.0571 3.5180 30 1 1.7470 0.4520 4.6733 31 1 2.9110 -1.7232 4.3478 32 1 0.1980 -2.5225 5.0740 33 1 -0.1294 -2.7131 7.3774 34 1 2.1309 -2.5140 9.0593 35 1 1.2848 -0.9479 9.0689 36 1 1.6200 -1.8014 12.6358 37 1 0.4857 -2.3600 2.6066 38 1 1.7366 -3.5274 3.0981 39 1 2.1225 -2.5733 0.7978 40 1 3.4607 -2.2375 1.9244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116845312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:17 Heat of formation + Delta-G solvation = -135.983543 kcal Electronic energy + Delta-G solvation = -23248.769636 eV Core-core repulsion = 19610.249881 eV Total energy + Delta-G solvation = -3638.519755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07223 -39.29211 -38.21774 -37.00276 -36.18845 -35.50421 -34.31447 -32.08191 -31.70671 -30.23548 -29.00802 -25.48655 -24.36650 -24.17238 -21.75025 -21.57076 -20.01341 -19.54125 -18.80520 -17.94948 -17.38744 -17.24308 -17.09407 -16.52420 -16.29686 -15.58788 -15.46530 -15.31409 -15.00950 -14.83302 -14.34112 -14.06161 -14.00290 -13.95147 -13.89328 -13.50244 -13.45322 -13.15894 -12.86208 -12.83840 -12.74991 -12.51963 -12.20133 -12.17466 -11.96520 -11.83413 -11.52615 -11.42018 -11.15208 -10.79710 -10.18156 -10.00890 -9.53467 -8.26960 -6.43098 -0.68054 1.44761 1.46083 1.59221 1.64296 1.93937 2.31653 2.40975 2.98346 3.08340 3.17248 3.53642 3.64340 3.87601 3.98565 4.11296 4.16332 4.26170 4.28177 4.41836 4.53202 4.79665 4.82933 4.88298 4.99277 5.03154 5.10993 5.16691 5.23227 5.29971 5.32371 5.52439 5.62277 5.67277 5.73598 5.88316 6.34539 6.69757 7.26888 7.39605 7.80576 8.85637 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.042695 B = 0.002472 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.650784 B =11322.906231 C =11419.080562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.614 3.386 3 O -0.998 6.998 4 O -0.991 6.991 5 N -1.000 6.000 6 C 0.129 3.871 7 C -0.141 4.141 8 C 0.160 3.840 9 N -0.727 5.727 10 C 0.690 3.310 11 O -0.649 6.649 12 N -0.724 5.724 13 C 0.286 3.714 14 C -0.552 4.552 15 H 0.084 0.916 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.252 1.252 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.130 4.130 23 C 0.122 3.878 24 H 0.144 0.856 25 H 0.143 0.857 26 H 0.152 0.848 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.411 0.589 33 H 0.404 0.596 34 H -0.017 1.017 35 H -0.016 1.016 36 H 0.268 0.732 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 -0.704 -25.357 26.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.712 3.288 3 O -0.989 6.989 4 O -0.982 6.982 5 N -0.837 5.837 6 C 0.003 3.997 7 C -0.182 4.182 8 C 0.055 3.945 9 N -0.383 5.383 10 C 0.390 3.610 11 O -0.532 6.532 12 N -0.378 5.378 13 C 0.163 3.837 14 C -0.590 4.590 15 H 0.102 0.898 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.175 1.175 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.170 4.170 23 C -0.003 4.003 24 H 0.163 0.837 25 H 0.161 0.839 26 H 0.171 0.829 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.240 0.760 34 H 0.001 0.999 35 H 0.002 0.998 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.026 0.117 -25.693 26.390 hybrid contribution -1.098 -0.413 1.373 1.806 sum -7.125 -0.296 -24.319 25.343 Atomic orbital electron populations 1.30377 1.23153 1.13844 1.13098 1.04585 0.79509 0.72480 0.72211 1.93559 1.79721 1.39613 1.86013 1.93558 1.79609 1.62239 1.62771 1.57640 1.84875 1.14609 1.26605 1.21317 1.00159 0.93108 0.85101 1.22306 1.01640 0.96354 0.97852 1.20810 0.94890 0.94003 0.84798 1.45002 1.26368 1.64336 1.02610 1.16369 0.83379 0.79427 0.81847 1.90845 1.26159 1.50612 1.85554 1.45291 1.24755 1.62303 1.05467 1.18369 0.94175 0.93957 0.77247 1.21639 1.06717 1.39213 0.91420 0.89767 1.26071 0.97869 0.95141 1.00642 1.70151 1.27980 1.43794 1.15137 0.85099 0.78353 0.77805 0.77851 1.17530 1.20567 1.20564 1.22193 1.02412 0.99998 0.92376 1.21500 1.00685 0.78686 0.99441 0.83723 0.83873 0.82924 0.91857 0.88026 0.88904 0.93038 0.92487 0.75233 0.76023 0.99886 0.99818 0.92300 0.87961 0.88836 0.86760 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.70 10.99 113.37 1.25 -1.45 16 2 S 2.61 36.53 6.05 -56.49 -0.34 36.18 16 3 O -1.00 -22.20 16.72 -127.65 -2.13 -24.34 16 4 O -0.99 -20.03 16.73 -127.65 -2.14 -22.16 16 5 N -1.00 -14.08 3.22 -513.09 -1.65 -15.73 16 6 C 0.13 2.25 6.31 86.36 0.55 2.79 16 7 C -0.14 -2.77 5.65 30.67 0.17 -2.59 16 8 C 0.16 3.42 2.42 45.02 0.11 3.53 16 9 N -0.73 -18.30 5.08 -457.68 -2.33 -20.62 16 10 C 0.69 27.32 8.53 179.06 1.53 28.85 16 11 O -0.65 -32.62 16.01 -4.00 -0.06 -32.68 16 12 N -0.72 -30.09 5.55 -482.29 -2.68 -32.77 16 13 C 0.29 15.68 5.43 85.63 0.46 16.14 16 14 C -0.55 -29.67 9.28 25.60 0.24 -29.43 16 15 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 18 Si 0.99 41.81 29.54 68.60 2.03 43.83 16 19 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 22 C -0.13 -1.49 5.55 30.67 0.17 -1.32 16 23 C 0.12 1.49 6.31 86.36 0.55 2.04 16 24 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.10 1.58 7.10 -2.39 -0.02 1.57 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.62 7.58 -2.38 -0.02 1.60 16 32 H 0.41 7.12 8.62 -92.71 -0.80 6.32 16 33 H 0.40 13.55 8.34 -92.71 -0.77 12.78 16 34 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 0.99 7.11 -2.39 -0.02 0.97 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -85.67 343.63 -4.05 -89.72 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.51 Total: 15.27 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 5.48 Total: 19.13 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -6.37 Total: -124.95 kcal Atomic # 8 Polarization: -74.85 SS G_CDS: -4.33 Total: -79.18 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 36.53 SS G_CDS: -0.34 Total: 36.18 kcal Total: -85.67 -4.05 -89.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116845312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.265 kcal (2) G-P(sol) polarization free energy of solvation -85.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds