Wall clock time and date at job start Fri Apr 10 2020 14:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42098 * 110.54221 * 2 1 4 4 O 1.42107 * 110.54286 * 223.25290 * 2 1 3 5 5 N 1.65598 * 104.45323 * 111.62687 * 2 1 3 6 6 C 1.47019 * 125.64590 * 269.95809 * 5 2 1 7 7 C 1.54330 * 107.26866 * 181.09198 * 6 5 2 8 8 C 1.55157 * 102.94049 * 22.19588 * 7 6 5 9 9 H 1.09003 * 111.00560 * 82.60874 * 8 7 6 10 10 C 1.53001 * 110.99957 * 206.42194 * 8 7 6 11 11 N 1.46500 * 109.46889 * 293.54468 * 10 8 7 12 12 C 1.34783 * 119.99527 * 180.02562 * 11 10 8 13 13 O 1.21584 * 120.00232 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99881 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00199 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47265 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99844 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00237 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99913 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46824 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47296 * 119.99611 * 20 18 16 23 23 H 1.48503 * 109.46695 * 239.99669 * 20 18 16 24 24 C 1.47426 * 125.65034 * 90.00092 * 5 2 1 25 25 H 1.09004 * 109.46869 * 308.37264 * 1 2 3 26 26 H 1.08998 * 109.47665 * 68.37407 * 1 2 3 27 27 H 1.09005 * 109.47313 * 188.37779 * 1 2 3 28 28 H 1.09000 * 109.88042 * 61.67827 * 6 5 2 29 29 H 1.08996 * 109.88551 * 300.50969 * 6 5 2 30 30 H 1.08996 * 110.71860 * 263.82642 * 7 6 5 31 31 H 1.09002 * 110.71679 * 140.55640 * 7 6 5 32 32 H 1.08997 * 109.47151 * 53.54451 * 10 8 7 33 33 H 1.08999 * 109.46931 * 173.55070 * 10 8 7 34 34 H 0.96996 * 120.00726 * 0.02562 * 11 10 8 35 35 H 0.97002 * 119.99766 * 0.02562 * 14 12 11 36 36 H 1.09010 * 109.46978 * 300.00247 * 15 14 12 37 37 H 1.08998 * 109.47579 * 60.00164 * 15 14 12 38 38 H 0.97002 * 119.99678 * 180.02562 * 19 18 16 39 39 H 1.09004 * 110.36498 * 36.99618 * 24 5 2 40 40 H 1.09000 * 110.45813 * 274.72368 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4907 6 6 2.4419 0.2139 2.7021 7 6 2.8343 -0.7584 3.8346 8 6 3.3700 -1.9930 3.0625 9 1 4.4104 -1.8499 2.7704 10 6 3.2063 -3.2700 3.8892 11 7 4.0737 -3.2032 5.0679 12 6 4.0962 -4.2249 5.9467 13 8 3.3970 -5.2021 5.7609 14 7 4.8946 -4.1638 7.0308 15 6 4.9195 -5.2745 7.9857 16 6 5.8855 -4.9587 9.0985 17 1 6.4270 -4.0243 9.0945 18 6 6.0787 -5.8632 10.1210 19 7 5.4197 -7.0014 10.1255 20 14 7.2766 -5.4721 11.5000 21 1 7.8863 -4.1390 11.2628 22 1 6.5528 -5.4623 12.7966 23 1 8.3435 -6.5045 11.5365 24 6 2.4417 -2.0113 1.8226 25 1 -0.3633 0.6380 0.8057 26 1 -0.3634 0.3787 -0.9553 27 1 -0.3634 -1.0167 0.1497 28 1 1.5239 0.7390 2.9658 29 1 3.2459 0.9304 2.5335 30 1 1.9630 -1.0256 4.4325 31 1 3.6151 -0.3263 4.4605 32 1 2.1682 -3.3665 4.2070 33 1 3.4825 -4.1329 3.2832 34 1 4.6318 -2.4239 5.2159 35 1 5.4527 -3.3844 7.1788 36 1 3.9221 -5.4191 8.4010 37 1 5.2365 -6.1846 7.4764 38 1 5.5554 -7.6375 10.8452 39 1 2.9269 -2.5257 0.9930 40 1 1.4945 -2.4932 2.0650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339394926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:29 Heat of formation + Delta-G solvation = -134.964985 kcal Electronic energy + Delta-G solvation = -22600.774791 eV Core-core repulsion = 18962.299204 eV Total energy + Delta-G solvation = -3638.475587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91384 -39.57082 -38.19863 -37.03168 -36.27793 -35.65748 -34.30973 -32.15106 -30.41837 -30.23658 -29.14533 -26.33596 -24.37447 -23.33559 -21.77813 -21.47069 -19.90431 -19.68551 -18.69610 -18.04607 -17.72617 -17.24863 -17.00188 -16.58525 -16.42050 -16.08532 -15.18639 -15.05086 -14.89542 -14.56319 -14.38686 -14.21763 -14.00259 -13.97520 -13.92578 -13.69518 -13.24653 -13.15792 -12.98591 -12.85161 -12.72809 -12.64505 -12.19348 -12.10637 -11.98528 -11.85056 -11.58294 -11.41581 -11.19484 -10.79041 -10.20608 -9.91637 -9.51971 -8.26145 -6.42003 -0.73754 1.45479 1.46750 1.59804 1.63733 1.96623 2.31387 2.41776 2.94820 3.06378 3.09087 3.44350 3.63662 3.74882 3.87448 4.05780 4.18245 4.36429 4.39802 4.48619 4.59349 4.74938 4.81139 4.92486 4.95343 5.04401 5.10442 5.15744 5.18953 5.31214 5.37101 5.45624 5.52771 5.61382 5.72824 5.88943 6.32681 6.70589 7.27660 7.37867 7.79089 8.86383 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.044602 B = 0.002171 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.624586 B =12896.763081 C =13210.466068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.633 3.367 3 O -0.993 6.993 4 O -0.995 6.995 5 N -1.017 6.017 6 C 0.116 3.884 7 C -0.122 4.122 8 C -0.101 4.101 9 H 0.096 0.904 10 C 0.151 3.849 11 N -0.729 5.729 12 C 0.691 3.309 13 O -0.650 6.650 14 N -0.724 5.724 15 C 0.285 3.715 16 C -0.552 4.552 17 H 0.084 0.916 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.986 3.014 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.120 3.880 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.411 0.589 35 H 0.405 0.595 36 H -0.014 1.014 37 H -0.016 1.016 38 H 0.268 0.732 39 H 0.081 0.919 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 19.346 -18.271 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.732 3.268 3 O -0.984 6.984 4 O -0.986 6.986 5 N -0.855 5.855 6 C -0.008 4.008 7 C -0.161 4.161 8 C -0.122 4.122 9 H 0.115 0.885 10 C 0.026 3.974 11 N -0.387 5.387 12 C 0.390 3.610 13 O -0.533 6.533 14 N -0.378 5.378 15 C 0.161 3.839 16 C -0.590 4.590 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.809 3.191 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.005 4.005 25 H 0.166 0.834 26 H 0.162 0.838 27 H 0.164 0.836 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.247 0.753 35 H 0.240 0.760 36 H 0.004 0.996 37 H 0.002 0.998 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.510 18.624 -19.118 28.333 hybrid contribution 0.308 0.035 1.064 1.109 sum -9.202 18.659 -18.053 27.545 Atomic orbital electron populations 1.30369 1.23353 1.13517 1.13248 1.03975 0.79246 0.72235 0.71367 1.93557 1.79664 1.39241 1.85890 1.93562 1.79712 1.62639 1.62689 1.58445 1.85439 1.15316 1.26299 1.21856 1.02169 0.93655 0.83169 1.22758 1.02519 0.93995 0.96810 1.22483 1.01194 0.93746 0.94751 0.88540 1.21083 0.94059 0.97476 0.84750 1.44836 1.48617 1.20315 1.24921 1.16319 0.80694 0.83360 0.80617 1.90842 1.48637 1.35349 1.78503 1.45289 1.45348 1.23307 1.23872 1.18393 0.95181 0.84115 0.86163 1.21637 1.24958 1.05175 1.07222 0.89802 1.26066 0.98095 0.94368 1.01202 1.70153 1.42989 1.09662 1.34187 0.85101 0.77687 0.78891 0.77434 1.17638 1.20473 1.20607 1.22020 1.00205 0.81071 0.97229 0.83377 0.83780 0.83608 0.89446 0.91375 0.89730 0.88713 0.91785 0.92638 0.75304 0.76000 0.99616 0.99792 0.92297 0.90015 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.62 10.99 113.37 1.25 -1.37 16 2 S 2.63 35.32 6.29 -56.49 -0.36 34.96 16 3 O -0.99 -20.39 17.60 -127.65 -2.25 -22.64 16 4 O -1.00 -21.32 17.28 -127.65 -2.21 -23.52 16 5 N -1.02 -12.38 3.62 -506.43 -1.83 -14.21 16 6 C 0.12 1.19 6.90 86.73 0.60 1.79 16 7 C -0.12 -1.27 6.13 31.78 0.19 -1.08 16 8 C -0.10 -1.39 3.10 -9.40 -0.03 -1.42 16 9 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 10 C 0.15 3.20 5.12 86.38 0.44 3.64 16 11 N -0.73 -18.85 5.41 -478.53 -2.59 -21.44 16 12 C 0.69 27.61 8.57 179.05 1.53 29.15 16 13 O -0.65 -32.80 16.34 -3.98 -0.07 -32.87 16 14 N -0.72 -30.38 5.55 -482.29 -2.68 -33.06 16 15 C 0.28 15.65 5.43 85.63 0.46 16.12 16 16 C -0.55 -29.78 9.28 25.60 0.24 -29.54 16 17 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 18 C 0.00 0.12 5.46 84.65 0.46 0.58 16 19 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 20 Si 0.99 42.00 29.54 68.60 2.03 44.02 16 21 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 C 0.12 1.53 6.54 86.85 0.57 2.10 16 25 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.89 8.01 -2.39 -0.02 0.87 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.41 7.68 8.35 -92.71 -0.77 6.90 16 35 H 0.40 13.77 8.34 -92.71 -0.77 13.00 16 36 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.08 1.18 7.67 -2.38 -0.02 1.16 16 40 H 0.09 0.84 8.03 -2.39 -0.02 0.82 16 Total: -1.00 -85.60 349.59 -4.43 -90.03 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -0.49 Total: 14.48 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 5.72 Total: 19.96 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -6.82 Total: -124.43 kcal Atomic # 8 Polarization: -74.51 SS G_CDS: -4.52 Total: -79.02 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 35.32 SS G_CDS: -0.36 Total: 34.96 kcal Total: -85.60 -4.43 -90.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339394926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.935 kcal (2) G-P(sol) polarization free energy of solvation -85.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds