Wall clock time and date at job start Fri Apr 10 2020 14:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42102 * 110.54746 * 2 1 4 4 O 1.42098 * 110.54668 * 223.24708 * 2 1 3 5 5 N 1.65600 * 104.45004 * 111.62255 * 2 1 3 6 6 C 1.46501 * 119.99897 * 64.99985 * 5 2 1 7 7 C 1.53495 * 114.20743 * 215.00349 * 6 5 2 8 8 N 1.47066 * 87.98658 * 220.14538 * 7 6 5 9 9 C 1.34780 * 136.06263 * 206.86221 * 8 7 6 10 10 O 1.21583 * 119.99484 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00249 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99924 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47185 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47057 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47023 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99666 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99929 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99860 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00003 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46832 * 90.00092 * 19 17 15 21 21 H 1.48503 * 109.47013 * 209.99886 * 19 17 15 22 22 H 1.48494 * 109.47002 * 330.00226 * 19 17 15 23 23 C 1.47067 * 87.88528 * 27.11900 * 8 7 6 24 24 H 1.08997 * 109.47707 * 308.37718 * 1 2 3 25 25 H 1.09000 * 109.46853 * 68.37933 * 1 2 3 26 26 H 1.08996 * 109.46975 * 188.37256 * 1 2 3 27 27 H 0.96995 * 120.00410 * 245.00424 * 5 2 1 28 28 H 1.09006 * 113.28128 * 348.06886 * 6 5 2 29 29 H 1.09005 * 113.46950 * 105.37104 * 7 6 5 30 30 H 1.08994 * 113.52293 * 334.93589 * 7 6 5 31 31 H 0.96995 * 120.00199 * 0.02562 * 11 9 8 32 32 H 1.09005 * 109.47303 * 300.00582 * 12 11 9 33 33 H 1.09000 * 109.47219 * 60.00222 * 12 11 9 34 34 H 1.08998 * 109.46626 * 300.00112 * 13 12 11 35 35 H 1.09000 * 109.47089 * 59.99862 * 13 12 11 36 36 H 1.08999 * 109.47015 * 299.99881 * 14 13 12 37 37 H 1.09009 * 109.46787 * 59.99881 * 14 13 12 38 38 H 0.96998 * 119.99818 * 179.97438 * 18 17 15 39 39 H 1.09007 * 113.46858 * 87.65629 * 23 8 7 40 40 H 1.08993 * 113.47208 * 218.09965 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 1.8907 -1.9706 1.8508 7 6 1.5238 -2.1637 3.3287 8 7 2.2839 -3.4224 3.2992 9 6 2.2517 -4.5916 3.9690 10 8 1.4269 -4.7678 4.8448 11 7 3.1335 -5.5653 3.6679 12 6 3.0988 -6.8358 4.3963 13 6 4.1967 -7.7590 3.8641 14 6 4.1600 -9.0862 4.6244 15 6 5.2411 -9.9958 4.0998 16 1 5.8897 -9.6605 3.3040 17 6 5.4020 -11.2558 4.6358 18 7 6.3451 -12.0497 4.1776 19 14 4.2805 -11.8354 6.0126 20 1 3.0892 -12.5054 5.4318 21 1 5.0141 -12.7932 6.8785 22 1 3.8466 -10.6684 6.8220 23 6 3.0990 -2.8415 2.2217 24 1 -0.3634 0.6380 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3633 -1.0167 0.1496 27 1 2.6919 -0.0236 2.1256 28 1 1.1979 -2.4412 1.1531 29 1 0.4561 -2.3054 3.4960 30 1 1.9571 -1.4104 3.9865 31 1 3.7917 -5.4245 2.9695 32 1 3.2630 -6.6508 5.4578 33 1 2.1267 -7.3085 4.2561 34 1 4.0328 -7.9441 2.8025 35 1 5.1687 -7.2861 4.0046 36 1 4.3237 -8.9014 5.6861 37 1 3.1879 -9.5589 4.4835 38 1 6.4586 -12.9361 4.5549 39 1 3.9525 -2.2682 2.5839 40 1 3.3707 -3.5592 1.4478 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677219615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:52 Heat of formation + Delta-G solvation = -63.648900 kcal Electronic energy + Delta-G solvation = -22293.274852 eV Core-core repulsion = 18657.891763 eV Total energy + Delta-G solvation = -3635.383090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83138 -38.62595 -37.59075 -36.46764 -35.49364 -34.27669 -33.27613 -31.48808 -30.06604 -28.95163 -26.85499 -26.30812 -23.14009 -22.08677 -20.63545 -20.27438 -19.52927 -18.25268 -18.08419 -17.20885 -16.84337 -16.72226 -16.20547 -15.95000 -15.29695 -14.76776 -14.40495 -14.13221 -14.02991 -13.86509 -13.75981 -13.69786 -13.20146 -12.82384 -12.70266 -12.62059 -12.50632 -12.33220 -12.07116 -11.98065 -11.87955 -11.52317 -11.08353 -10.90022 -10.37023 -10.06070 -10.01807 -9.84428 -9.69815 -9.23249 -9.17907 -8.68814 -8.55708 -6.06491 -4.05244 -0.31339 1.94994 2.43284 3.16764 3.24247 3.31185 3.38740 3.43074 3.61375 3.69975 3.90990 4.13135 4.20671 4.36056 4.43303 4.44223 4.75786 4.94994 5.08621 5.10584 5.10931 5.27554 5.32127 5.56227 5.61390 5.66851 6.01298 6.29380 6.34571 6.44762 6.69476 6.79216 7.08872 7.22547 7.35810 7.75129 7.96332 8.49736 8.58568 8.97390 9.55674 11.06722 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.033115 B = 0.002160 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.333250 B =12958.057536 C =13485.832033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.614 3.386 3 O -0.957 6.957 4 O -0.950 6.950 5 N -1.103 6.103 6 C 0.113 3.887 7 C 0.118 3.882 8 N -0.668 5.668 9 C 0.736 3.264 10 O -0.587 6.587 11 N -0.736 5.736 12 C 0.133 3.867 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.088 3.912 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.422 0.578 28 H 0.130 0.870 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.396 0.604 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.263 0.737 39 H 0.090 0.910 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 28.210 -7.543 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.705 3.295 3 O -0.947 6.947 4 O -0.940 6.940 5 N -0.861 5.861 6 C 0.004 3.996 7 C -0.008 4.008 8 N -0.410 5.410 9 C 0.439 3.561 10 O -0.465 6.465 11 N -0.390 5.390 12 C 0.010 3.990 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.038 4.038 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.257 0.743 28 H 0.148 0.852 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.230 0.770 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.569 27.788 -7.539 31.417 hybrid contribution -0.566 -0.281 1.001 1.184 sum -13.136 27.507 -6.537 31.176 Atomic orbital electron populations 1.30548 1.28114 1.11852 1.11843 1.04830 0.77598 0.73892 0.73166 1.93640 1.77977 1.37597 1.85519 1.93660 1.76849 1.61680 1.61810 1.55548 1.73567 1.20120 1.36872 1.22590 0.98326 0.81306 0.97357 1.23165 0.98704 0.84479 0.94439 1.48329 1.38561 1.13131 1.40957 1.15211 0.81970 0.78483 0.80445 1.90935 1.41030 1.80390 1.34140 1.45287 1.36031 1.15722 1.41928 1.21565 1.00558 0.81168 0.95739 1.21712 0.96362 0.96405 1.00609 1.19504 0.97442 0.92057 0.95868 1.21091 1.15759 0.98508 1.20623 0.91003 1.25035 0.95194 0.96605 0.96699 1.69915 1.32666 1.08863 1.42735 0.86769 0.80937 0.78892 0.82650 1.20245 1.21386 1.18884 1.23448 0.95507 0.95493 0.89345 0.85038 0.85178 0.85273 0.74281 0.85185 0.89628 0.89442 0.77030 0.91875 0.91837 0.92085 0.92098 0.96273 0.96692 0.92698 0.89148 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -0.99 10.89 101.05 1.10 0.11 16 2 S 2.61 11.90 6.05 -107.50 -0.65 11.25 16 3 O -0.96 -7.84 18.08 -57.54 -1.04 -8.88 16 4 O -0.95 -8.26 17.82 -57.54 -1.03 -9.28 16 5 N -1.10 -3.46 5.72 -4.72 -0.03 -3.49 16 6 C 0.11 0.51 4.58 -67.81 -0.31 0.20 16 7 C 0.12 0.73 8.42 -8.51 -0.07 0.66 16 8 N -0.67 -6.67 3.69 -191.04 -0.70 -7.37 16 9 C 0.74 10.82 8.79 -86.92 -0.76 10.05 16 10 O -0.59 -11.08 17.12 5.29 0.09 -10.99 16 11 N -0.74 -10.30 5.56 -65.23 -0.36 -10.66 16 12 C 0.13 2.20 5.67 -4.04 -0.02 2.18 16 13 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 14 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 15 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 19 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 23 C 0.09 0.57 8.10 -8.51 -0.07 0.50 16 24 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 25 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 26 H 0.13 0.06 7.91 -51.93 -0.41 -0.35 16 27 H 0.42 0.73 8.91 -34.47 -0.31 0.42 16 28 H 0.13 0.41 7.83 -51.93 -0.41 0.00 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.40 4.58 8.19 -40.82 -0.33 4.24 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 37 H 0.01 0.34 7.57 -51.92 -0.39 -0.05 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -40.18 352.44 -9.16 -49.35 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.04 Total: -3.25 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.82 Total: -2.06 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.32 Total: -48.47 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.97 Total: -29.16 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: 11.90 SS G_CDS: -0.65 Total: 11.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -40.18 -9.16 -49.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677219615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.302 kcal (2) G-P(sol) polarization free energy of solvation -40.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds