Wall clock time and date at job start Fri Apr 10 2020 14:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42102 * 110.54746 * 2 1 4 4 O 1.42098 * 110.54668 * 223.24708 * 2 1 3 5 5 N 1.65600 * 104.45004 * 111.62255 * 2 1 3 6 6 C 1.46501 * 119.99897 * 64.99985 * 5 2 1 7 7 C 1.53495 * 114.20743 * 215.00349 * 6 5 2 8 8 N 1.47066 * 87.98658 * 220.14538 * 7 6 5 9 9 C 1.34780 * 136.06263 * 206.86221 * 8 7 6 10 10 O 1.21583 * 119.99484 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00249 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99924 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47185 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47057 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47023 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99666 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99929 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99860 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00003 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46832 * 90.00092 * 19 17 15 21 21 H 1.48503 * 109.47013 * 209.99886 * 19 17 15 22 22 H 1.48494 * 109.47002 * 330.00226 * 19 17 15 23 23 C 1.47067 * 87.88528 * 27.11900 * 8 7 6 24 24 H 1.08997 * 109.47707 * 308.37718 * 1 2 3 25 25 H 1.09000 * 109.46853 * 68.37933 * 1 2 3 26 26 H 1.08996 * 109.46975 * 188.37256 * 1 2 3 27 27 H 0.96995 * 120.00410 * 245.00424 * 5 2 1 28 28 H 1.09006 * 113.28128 * 348.06886 * 6 5 2 29 29 H 1.09005 * 113.46950 * 105.37104 * 7 6 5 30 30 H 1.08994 * 113.52293 * 334.93589 * 7 6 5 31 31 H 0.96995 * 120.00199 * 0.02562 * 11 9 8 32 32 H 1.09005 * 109.47303 * 300.00582 * 12 11 9 33 33 H 1.09000 * 109.47219 * 60.00222 * 12 11 9 34 34 H 1.08998 * 109.46626 * 300.00112 * 13 12 11 35 35 H 1.09000 * 109.47089 * 59.99862 * 13 12 11 36 36 H 1.08999 * 109.47015 * 299.99881 * 14 13 12 37 37 H 1.09009 * 109.46787 * 59.99881 * 14 13 12 38 38 H 0.96998 * 119.99818 * 179.97438 * 18 17 15 39 39 H 1.09007 * 113.46858 * 87.65629 * 23 8 7 40 40 H 1.08993 * 113.47208 * 218.09965 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 1.8907 -1.9706 1.8508 7 6 1.5238 -2.1637 3.3287 8 7 2.2839 -3.4224 3.2992 9 6 2.2517 -4.5916 3.9690 10 8 1.4269 -4.7678 4.8448 11 7 3.1335 -5.5653 3.6679 12 6 3.0988 -6.8358 4.3963 13 6 4.1967 -7.7590 3.8641 14 6 4.1600 -9.0862 4.6244 15 6 5.2411 -9.9958 4.0998 16 1 5.8897 -9.6605 3.3040 17 6 5.4020 -11.2558 4.6358 18 7 6.3451 -12.0497 4.1776 19 14 4.2805 -11.8354 6.0126 20 1 3.0892 -12.5054 5.4318 21 1 5.0141 -12.7932 6.8785 22 1 3.8466 -10.6684 6.8220 23 6 3.0990 -2.8415 2.2217 24 1 -0.3634 0.6380 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3633 -1.0167 0.1496 27 1 2.6919 -0.0236 2.1256 28 1 1.1979 -2.4412 1.1531 29 1 0.4561 -2.3054 3.4960 30 1 1.9571 -1.4104 3.9865 31 1 3.7917 -5.4245 2.9695 32 1 3.2630 -6.6508 5.4578 33 1 2.1267 -7.3085 4.2561 34 1 4.0328 -7.9441 2.8025 35 1 5.1687 -7.2861 4.0046 36 1 4.3237 -8.9014 5.6861 37 1 3.1879 -9.5589 4.4835 38 1 6.4586 -12.9361 4.5549 39 1 3.9525 -2.2682 2.5839 40 1 3.3707 -3.5592 1.4478 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677219615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:52 Heat of formation + Delta-G solvation = -98.335363 kcal Electronic energy + Delta-G solvation = -22294.778970 eV Core-core repulsion = 18657.891763 eV Total energy + Delta-G solvation = -3636.887208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59491 -39.57028 -38.09596 -36.97425 -36.93734 -35.15027 -34.73804 -33.24361 -30.22181 -30.02185 -28.22032 -26.95617 -24.59970 -22.93159 -22.19938 -20.84352 -20.39405 -19.09859 -18.75583 -18.59692 -17.72477 -17.41393 -17.08444 -16.73696 -16.32196 -16.20341 -15.53354 -15.35984 -14.94288 -14.70826 -14.66677 -14.02045 -13.94088 -13.80083 -13.70366 -13.64097 -13.22339 -13.15147 -13.03297 -12.86933 -12.72754 -12.68827 -12.50616 -11.93265 -11.86323 -11.77303 -11.59387 -11.33724 -11.29754 -10.75452 -10.41413 -10.28001 -9.58552 -8.28659 -6.32605 -0.64612 1.32595 1.37864 1.39510 1.51492 1.83853 2.12185 2.37235 2.88338 2.92041 3.07059 3.27714 3.38372 3.82942 3.87272 4.07652 4.09573 4.21130 4.24077 4.40870 4.41820 4.51682 4.60819 4.62332 4.78043 4.90201 4.93295 5.02394 5.04204 5.21996 5.40769 5.51879 5.56563 5.65923 6.06242 6.20258 6.28154 6.75344 6.96258 7.32153 7.51850 8.87747 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.033115 B = 0.002160 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.333250 B =12958.057536 C =13485.832033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.624 3.376 3 O -0.998 6.998 4 O -0.997 6.997 5 N -1.094 6.094 6 C 0.130 3.870 7 C 0.113 3.887 8 N -0.671 5.671 9 C 0.731 3.269 10 O -0.635 6.635 11 N -0.731 5.731 12 C 0.147 3.853 13 C -0.099 4.099 14 C -0.012 4.012 15 C -0.530 4.530 16 H 0.037 0.963 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.247 1.247 23 C 0.078 3.922 24 H 0.152 0.848 25 H 0.142 0.858 26 H 0.147 0.853 27 H 0.430 0.570 28 H 0.148 0.852 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.408 0.592 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.266 0.734 39 H 0.104 0.896 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.607 29.858 -7.164 34.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.720 3.280 3 O -0.988 6.988 4 O -0.987 6.987 5 N -0.852 5.852 6 C 0.020 3.980 7 C -0.011 4.011 8 N -0.411 5.411 9 C 0.433 3.567 10 O -0.517 6.517 11 N -0.386 5.386 12 C 0.023 3.977 13 C -0.137 4.137 14 C -0.050 4.050 15 C -0.568 4.568 16 H 0.055 0.945 17 C -0.194 4.194 18 N -0.591 5.591 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.171 1.171 23 C -0.047 4.047 24 H 0.171 0.829 25 H 0.160 0.840 26 H 0.165 0.835 27 H 0.266 0.734 28 H 0.165 0.835 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.244 0.756 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.593 29.516 -7.208 33.706 hybrid contribution 0.098 -0.698 0.789 1.058 sum -14.495 28.817 -6.419 32.890 Atomic orbital electron populations 1.30379 1.23302 1.13733 1.13511 1.04254 0.79008 0.72224 0.72504 1.93587 1.79954 1.39297 1.85992 1.93603 1.79053 1.62585 1.63475 1.55272 1.73920 1.19645 1.36364 1.22461 0.97286 0.81470 0.96761 1.23470 0.98812 0.82980 0.95888 1.48330 1.39507 1.12709 1.40591 1.15330 0.81415 0.79579 0.80330 1.90892 1.42832 1.81633 1.36367 1.45030 1.36517 1.14997 1.42052 1.21172 0.99186 0.81943 0.95402 1.21471 0.97358 0.94691 1.00170 1.19466 0.95784 0.93429 0.96301 1.21460 1.16296 0.99452 1.19608 0.94496 1.26005 0.96867 0.96885 0.99615 1.70064 1.34866 1.09512 1.44707 0.85681 0.78875 0.78871 0.79375 1.19189 1.21081 1.17059 1.23776 0.96618 0.95872 0.88395 0.82948 0.83995 0.83475 0.73356 0.83463 0.89260 0.87734 0.75626 0.92663 0.92422 0.91758 0.91878 0.96011 0.96050 0.92525 0.87790 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 0.37 10.89 113.37 1.23 1.61 16 2 S 2.62 19.66 6.05 -56.49 -0.34 19.32 16 3 O -1.00 -15.56 18.08 -127.65 -2.31 -17.87 16 4 O -1.00 -16.45 17.82 -127.65 -2.27 -18.73 16 5 N -1.09 -4.34 5.72 -168.86 -0.97 -5.30 16 6 C 0.13 0.81 4.58 45.46 0.21 1.02 16 7 C 0.11 1.12 8.42 83.18 0.70 1.82 16 8 N -0.67 -12.18 3.69 -876.58 -3.23 -15.41 16 9 C 0.73 20.69 8.79 179.05 1.57 22.27 16 10 O -0.64 -23.67 17.12 -3.98 -0.07 -23.74 16 11 N -0.73 -19.64 5.56 -478.54 -2.66 -22.30 16 12 C 0.15 4.74 5.67 86.38 0.49 5.23 16 13 C -0.10 -3.59 5.27 30.60 0.16 -3.43 16 14 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 15 C -0.53 -30.15 9.66 25.60 0.25 -29.90 16 16 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 17 C 0.00 0.18 5.47 84.65 0.46 0.64 16 18 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 19 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 23 C 0.08 0.85 8.10 83.18 0.67 1.52 16 24 H 0.15 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.14 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.15 -0.49 7.91 -2.39 -0.02 -0.51 16 27 H 0.43 0.53 8.91 -96.75 -0.86 -0.33 16 28 H 0.15 0.45 7.83 -2.38 -0.02 0.43 16 29 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.41 8.86 8.19 -92.71 -0.76 8.11 16 32 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 37 H 0.02 0.95 7.57 -2.38 -0.02 0.93 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -88.74 352.44 -4.41 -93.16 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -0.62 Total: 3.49 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 5.87 Total: 0.37 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -6.56 Total: -102.27 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -4.65 Total: -60.34 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 16 Polarization: 19.66 SS G_CDS: -0.34 Total: 19.32 kcal Total: -88.74 -4.41 -93.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677219615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.180 kcal (2) G-P(sol) polarization free energy of solvation -88.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds