Wall clock time and date at job start Fri Apr 10 2020 14:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46953 * 2 1 4 4 O 1.42903 * 109.46744 * 119.99175 * 2 1 3 5 5 C 1.35684 * 117.00127 * 275.38497 * 4 2 1 6 6 C 1.39202 * 119.87570 * 5.09306 * 5 4 2 7 7 C 1.36587 * 120.13331 * 179.75990 * 6 5 4 8 8 C 1.40267 * 119.86643 * 0.52935 * 7 6 5 9 9 C 1.46736 * 120.12349 * 179.74287 * 8 7 6 10 10 N 1.30702 * 120.00365 * 359.97438 * 9 8 7 11 11 N 1.40099 * 120.00043 * 179.97438 * 10 9 8 12 12 C 1.34779 * 119.99440 * 180.02562 * 11 10 9 13 13 O 1.21975 * 120.00365 * 359.97438 * 12 11 10 14 14 C 1.40687 * 119.99367 * 180.02562 * 12 11 10 15 15 H 1.07997 * 120.00056 * 359.97438 * 14 12 11 16 16 C 1.40208 * 119.99571 * 180.02562 * 14 12 11 17 17 N 1.30596 * 120.00055 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99538 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47486 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47200 * 119.99663 * 18 16 14 21 21 H 1.48501 * 109.47022 * 239.99256 * 18 16 14 22 22 C 1.40260 * 119.74878 * 359.72315 * 8 7 6 23 23 C 1.36593 * 119.87125 * 359.97438 * 22 8 7 24 24 C 1.50697 * 109.47494 * 239.99392 * 2 1 3 25 25 O 1.20827 * 119.99772 * 245.00286 * 24 2 1 26 26 O 1.34223 * 120.00161 * 64.99767 * 24 2 1 27 27 H 1.08996 * 109.47258 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47804 * 300.00823 * 1 2 3 29 29 H 1.09000 * 109.46826 * 60.00728 * 1 2 3 30 30 H 1.08007 * 119.93344 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.07079 * 180.25037 * 7 6 5 32 32 H 1.07997 * 119.99662 * 179.97438 * 9 8 7 33 33 H 0.96998 * 119.99934 * 359.97438 * 11 10 9 34 34 H 0.97003 * 119.99723 * 180.02562 * 17 16 14 35 35 H 1.07994 * 120.06336 * 180.02562 * 22 8 7 36 36 H 1.07995 * 119.93569 * 180.02562 * 23 22 8 37 37 H 0.96696 * 117.00258 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 1.1669 5 6 2.1046 0.0597 2.3044 6 6 1.6489 1.3749 2.3231 7 6 1.7409 2.1162 3.4666 8 6 2.3059 1.5533 4.6204 9 6 2.4126 2.3464 5.8504 10 7 1.9812 3.5800 5.8721 11 7 2.0826 4.3370 7.0466 12 6 1.6373 5.6088 7.0690 13 8 1.1464 6.1009 6.0667 14 6 1.7396 6.3692 8.2483 15 1 2.1746 5.9336 9.1356 16 6 1.2758 7.6921 8.2718 17 7 0.7493 8.2186 7.1989 18 14 1.4124 8.7019 9.8374 19 1 2.0418 7.8809 10.9027 20 1 2.2461 9.9035 9.5803 21 1 0.0572 9.1240 10.2739 22 6 2.7682 0.2293 4.5942 23 6 2.6654 -0.5045 3.4467 24 6 2.0324 -0.7105 -1.2303 25 8 2.6507 -1.7429 -1.1216 26 8 1.7930 -0.1966 -2.4469 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.2187 1.8090 1.4326 31 1 1.3834 3.1352 3.4811 32 1 2.8477 1.9108 6.7377 33 1 2.4727 3.9455 7.8437 34 1 0.4288 9.1340 7.2151 35 1 3.2037 -0.2093 5.4797 36 1 3.0206 -1.5242 3.4254 37 1 2.1348 -0.6882 -3.2062 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039557316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:27 Heat of formation + Delta-G solvation = -122.527585 kcal Electronic energy + Delta-G solvation = -23157.172643 eV Core-core repulsion = 19286.073768 eV Total energy + Delta-G solvation = -3871.098874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.91761 -40.83059 -39.61796 -38.78335 -37.20718 -36.73666 -34.72325 -33.59698 -32.81023 -32.01396 -30.29547 -28.39818 -26.37700 -24.73772 -24.13511 -22.63992 -21.79032 -21.26246 -19.69887 -19.46065 -18.74538 -18.36423 -17.65427 -17.59941 -17.13993 -16.53614 -16.16772 -16.02816 -15.79331 -15.19038 -15.15265 -14.85093 -14.68338 -14.41208 -14.07219 -13.90374 -13.42576 -13.30579 -13.15143 -12.93741 -12.86982 -12.72956 -12.70256 -12.61943 -12.07445 -11.98450 -11.85385 -11.51610 -11.01381 -10.95739 -10.07658 -9.97868 -9.94847 -8.66535 -8.42627 -7.09000 -0.08989 0.45504 0.98513 1.25865 1.37078 1.39759 1.57367 1.59483 2.08008 2.36541 2.42275 2.51370 2.92075 3.59949 3.65366 3.71690 3.77430 3.89328 3.92604 4.04989 4.29451 4.38982 4.52767 4.62918 4.66312 4.72990 4.98730 5.10092 5.14877 5.19751 5.26111 5.42091 5.45510 5.65736 5.69227 5.82067 6.03645 6.26750 6.68255 6.84633 6.96557 7.46861 8.41720 8.59567 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.030781 B = 0.002213 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.444471 B =12650.463543 C =13360.148884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.084 3.916 3 H 0.129 0.871 4 O -0.303 6.303 5 C 0.129 3.871 6 C -0.208 4.208 7 C -0.063 4.063 8 C -0.089 4.089 9 C 0.070 3.930 10 N -0.267 5.267 11 N -0.596 5.596 12 C 0.544 3.456 13 O -0.617 6.617 14 C -0.561 4.561 15 H 0.095 0.905 16 C 0.029 3.971 17 N -0.801 5.801 18 Si 1.010 2.990 19 H -0.243 1.243 20 H -0.265 1.265 21 H -0.265 1.265 22 C -0.042 4.042 23 C -0.149 4.149 24 C 0.494 3.506 25 O -0.534 6.534 26 O -0.497 6.497 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.150 0.850 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.384 0.616 34 H 0.281 0.719 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 -18.096 -11.484 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.026 3.974 3 H 0.146 0.854 4 O -0.217 6.217 5 C 0.083 3.917 6 C -0.227 4.227 7 C -0.084 4.084 8 C -0.092 4.092 9 C -0.139 4.139 10 N -0.074 5.074 11 N -0.341 5.341 12 C 0.354 3.646 13 O -0.502 6.502 14 C -0.597 4.597 15 H 0.113 0.887 16 C -0.190 4.190 17 N -0.429 5.429 18 Si 0.828 3.172 19 H -0.166 1.166 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.062 4.062 23 C -0.168 4.168 24 C 0.336 3.664 25 O -0.424 6.424 26 O -0.312 6.312 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.126 0.874 30 H 0.167 0.833 31 H 0.128 0.872 32 H 0.159 0.841 33 H 0.222 0.778 34 H 0.092 0.908 35 H 0.187 0.813 36 H 0.172 0.828 37 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 1.820 -17.004 -12.353 21.097 hybrid contribution 0.655 -0.224 0.736 1.010 sum 2.475 -17.228 -11.617 20.926 Atomic orbital electron populations 1.22347 0.89811 1.04754 1.05941 1.21866 0.97512 0.97190 0.80798 0.85379 1.86046 1.81478 1.37983 1.16189 1.19394 0.95838 0.90108 0.86380 1.21087 1.07348 0.94017 1.00220 1.21034 0.95520 0.99441 0.92367 1.18644 1.04099 0.94614 0.91812 1.24608 0.99815 0.90991 0.98512 1.74902 1.14061 1.07296 1.11181 1.47290 1.64833 1.13545 1.08461 1.17186 0.78756 0.78601 0.90086 1.90651 1.50668 1.70720 1.38169 1.20340 1.42952 0.98589 0.97844 0.88662 1.27158 0.91329 0.98859 1.01607 1.70184 1.27052 1.14524 1.31116 0.84801 0.79120 0.77403 0.75913 1.16566 1.19011 1.18998 1.21098 0.95709 0.90767 0.98652 1.20360 1.03666 1.02288 0.90474 1.22818 0.75598 0.82524 0.85437 1.90760 1.38879 1.25110 1.87613 1.84421 1.74386 1.56135 1.16253 0.90880 0.89858 0.87390 0.83288 0.87246 0.84084 0.77807 0.90833 0.81348 0.82755 0.69987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.14 71.98 0.66 -1.49 16 2 C 0.08 1.37 2.75 29.85 0.08 1.45 16 3 H 0.13 1.73 6.30 -2.39 -0.02 1.72 16 4 O -0.30 -6.68 9.33 -70.99 -0.66 -7.34 16 5 C 0.13 2.90 6.62 22.73 0.15 3.05 16 6 C -0.21 -4.96 8.16 22.12 0.18 -4.78 16 7 C -0.06 -1.92 9.54 22.38 0.21 -1.70 16 8 C -0.09 -2.54 5.88 -20.07 -0.12 -2.65 16 9 C 0.07 2.31 10.75 87.08 0.94 3.25 16 10 N -0.27 -12.19 10.19 -52.26 -0.53 -12.72 16 11 N -0.60 -29.22 6.26 -180.51 -1.13 -30.34 16 12 C 0.54 32.93 7.65 84.84 0.65 33.58 16 13 O -0.62 -43.44 15.20 -5.23 -0.08 -43.52 16 14 C -0.56 -31.52 9.26 23.35 0.22 -31.31 16 15 H 0.10 4.67 7.85 -2.91 -0.02 4.65 16 16 C 0.03 1.58 5.50 85.36 0.47 2.05 16 17 N -0.80 -48.42 11.71 21.86 0.26 -48.16 16 18 Si 1.01 39.29 29.56 68.60 2.03 41.31 16 19 H -0.24 -8.62 7.11 99.48 0.71 -7.91 16 20 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 21 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 22 C -0.04 -0.86 9.76 22.38 0.22 -0.64 16 23 C -0.15 -3.02 9.93 22.12 0.22 -2.80 16 24 C 0.49 8.45 7.66 71.24 0.55 9.00 16 25 O -0.53 -13.35 17.26 28.38 0.49 -12.86 16 26 O -0.50 -4.85 13.42 -51.35 -0.69 -5.54 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.12 6.89 -2.39 -0.02 1.10 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.15 2.81 5.40 -2.91 -0.02 2.79 16 31 H 0.11 4.04 7.55 -2.91 -0.02 4.02 16 32 H 0.14 3.52 8.03 -2.91 -0.02 3.50 16 33 H 0.38 15.46 8.61 -213.32 -1.84 13.62 16 34 H 0.28 15.12 8.29 -92.71 -0.77 14.35 16 35 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 37 H 0.44 0.54 9.10 -74.06 -0.67 -0.13 16 Total: -1.00 -89.14 337.24 2.74 -86.40 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -1.36 Total: 25.78 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.42 Total: 7.00 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -1.41 Total: -91.23 kcal Atomic # 8 Polarization: -68.32 SS G_CDS: -0.94 Total: -69.26 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.31 kcal Total: -89.14 2.74 -86.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039557316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.130 kcal (2) G-P(sol) polarization free energy of solvation -89.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds