Wall clock time and date at job start Fri Apr 10 2020 14:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46713 * 2 1 4 4 C 1.46496 * 120.00308 * 295.27944 * 3 2 1 5 5 C 1.50699 * 109.47520 * 275.00302 * 4 3 2 6 6 H 1.08001 * 119.99625 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00279 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00523 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99867 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47112 * 90.00002 * 9 7 5 11 11 H 1.48499 * 109.47143 * 210.00378 * 9 7 5 12 12 H 1.48500 * 109.46835 * 330.00116 * 9 7 5 13 13 S 1.65606 * 119.99913 * 115.28543 * 3 2 1 14 14 O 1.42096 * 106.40283 * 225.12257 * 13 3 2 15 15 O 1.42102 * 106.39820 * 358.03899 * 13 3 2 16 16 N 1.65595 * 107.21897 * 111.57650 * 13 3 2 17 17 C 1.46499 * 120.00255 * 260.58971 * 16 13 3 18 18 C 1.50706 * 115.54702 * 58.34500 * 17 16 13 19 19 O 1.20832 * 119.99876 * 217.63107 * 18 17 16 20 20 O 1.34224 * 120.00139 * 37.63376 * 18 17 16 21 21 C 1.45199 * 117.00118 * 175.61975 * 20 18 17 22 22 C 1.52995 * 117.50143 * 272.64004 * 17 16 13 23 23 C 1.53004 * 117.50316 * 204.01178 * 17 16 13 24 24 H 1.08996 * 109.46834 * 175.58323 * 1 2 3 25 25 H 1.09001 * 109.46396 * 295.57709 * 1 2 3 26 26 H 1.08995 * 109.47227 * 55.57744 * 1 2 3 27 27 H 1.09006 * 109.46787 * 240.00331 * 2 1 3 28 28 H 1.09000 * 109.47701 * 120.00457 * 2 1 3 29 29 H 1.08994 * 109.47137 * 35.00473 * 4 3 2 30 30 H 1.09009 * 109.47105 * 155.00269 * 4 3 2 31 31 H 0.96995 * 120.00618 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00005 * 80.59712 * 16 13 3 33 33 H 1.08996 * 109.47420 * 181.88385 * 21 20 18 34 34 H 1.09009 * 109.46665 * 301.87780 * 21 20 18 35 35 H 1.08994 * 109.47657 * 61.87729 * 21 20 18 36 36 H 1.08996 * 117.50124 * 359.97438 * 22 17 16 37 37 H 1.09000 * 117.50022 * 145.02532 * 22 17 16 38 38 H 1.08995 * 117.49859 * 214.97913 * 23 17 16 39 39 H 1.08999 * 117.49318 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7516 2.2525 -1.1472 5 6 2.8061 2.0324 -2.2010 6 1 3.5962 1.3155 -2.0329 7 6 2.7629 2.7469 -3.3794 8 7 3.6828 2.5545 -4.2993 9 14 1.3966 3.9874 -3.6699 10 1 1.8218 5.3186 -3.1678 11 1 1.1090 4.0754 -5.1241 12 1 0.1730 3.5540 -2.9486 13 16 2.8718 1.9578 1.2968 14 8 2.3391 3.2423 1.5888 15 8 2.9199 0.9021 2.2468 16 7 4.4291 2.2015 0.7894 17 6 5.4603 1.2036 1.0843 18 6 5.1936 -0.1823 0.5559 19 8 5.5031 -1.1489 1.2116 20 8 4.6123 -0.3430 -0.6432 21 6 4.4746 -1.7033 -1.1321 22 6 6.1955 1.3211 2.4209 23 6 6.9143 1.6789 1.1185 24 1 -0.3633 -1.0246 -0.0791 25 1 -0.3632 0.4437 0.9270 26 1 -0.3633 0.5809 -0.8477 27 1 1.8933 -0.5138 -0.8901 28 1 1.8935 -0.5139 0.8899 29 1 0.7705 2.0188 -1.5605 30 1 1.7716 3.2937 -0.8251 31 1 3.6522 3.0569 -5.1284 32 1 4.6587 3.0052 0.2970 33 1 4.0207 -1.6891 -2.1230 34 1 5.4581 -2.1699 -1.1896 35 1 3.8420 -2.2721 -0.4508 36 1 5.9122 2.1411 3.0807 37 1 6.4864 0.3959 2.9184 38 1 7.6778 0.9890 0.7592 39 1 7.1035 2.7342 0.9219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336885308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:41 Heat of formation + Delta-G solvation = -123.153060 kcal Electronic energy + Delta-G solvation = -25771.366932 eV Core-core repulsion = 22035.684886 eV Total energy + Delta-G solvation = -3735.682046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42299 -37.65295 -36.75414 -36.19804 -35.93116 -35.37792 -32.62539 -31.90522 -30.11884 -27.79418 -27.26896 -24.10040 -23.00055 -22.63647 -21.35948 -20.22503 -18.93263 -17.81807 -17.37526 -17.07661 -16.68707 -16.56498 -15.85889 -15.68401 -15.01869 -14.33995 -14.21378 -14.11264 -13.52093 -13.17364 -12.95681 -12.72473 -12.44727 -12.14473 -12.05673 -11.84390 -11.74046 -11.66538 -11.62918 -11.56077 -11.32599 -11.15609 -10.93331 -10.84152 -10.58736 -10.44959 -10.43540 -10.20562 -10.09057 -9.49129 -9.24807 -8.64458 -8.08155 -6.13712 -4.13178 1.11481 2.22491 2.81262 3.23431 3.28939 3.34034 3.35971 3.74163 3.91581 4.34954 4.63810 4.72004 4.83976 4.91222 5.16204 5.18597 5.40115 5.42071 5.48408 5.53445 5.71455 5.73750 5.79477 5.85625 5.97437 6.02685 6.08098 6.26601 6.51331 6.57278 6.63685 6.82624 7.13266 7.20528 7.43321 7.57533 7.98961 8.45850 9.04354 9.47809 10.98108 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.007266 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.868420 B = 3852.388924 C = 4106.778725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 N -0.981 5.981 4 C 0.214 3.786 5 C -0.539 4.539 6 H 0.101 0.899 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.785 3.215 14 O -0.984 6.984 15 O -0.988 6.988 16 N -1.075 6.075 17 C 0.107 3.893 18 C 0.487 3.513 19 O -0.502 6.502 20 O -0.318 6.318 21 C 0.036 3.964 22 C -0.145 4.145 23 C -0.138 4.138 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.424 0.576 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -4.329 7.860 9.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.004 4.004 3 N -0.822 5.822 4 C 0.091 3.909 5 C -0.578 4.578 6 H 0.119 0.881 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.688 3.312 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.189 1.189 13 S 2.793 3.207 14 O -0.967 6.967 15 O -0.972 6.972 16 N -0.833 5.833 17 C 0.014 3.986 18 C 0.328 3.672 19 O -0.389 6.389 20 O -0.233 6.233 21 C -0.058 4.058 22 C -0.184 4.184 23 C -0.177 4.177 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.259 0.741 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.661 -4.577 8.806 10.275 hybrid contribution -0.554 0.862 -1.264 1.627 sum 2.106 -3.716 7.542 8.667 Atomic orbital electron populations 1.22121 0.96561 1.01510 1.02233 1.21120 0.93931 0.82656 1.02699 1.57360 1.68506 1.20617 1.35766 1.19555 0.98474 0.88502 0.84389 1.21710 1.11742 1.24625 0.99721 0.88113 1.24846 0.95364 0.96502 0.95941 1.69885 1.33977 1.41625 1.07599 0.87089 0.83681 0.82714 0.77708 1.20004 1.21178 1.18933 1.01761 0.72469 0.73207 0.73264 1.93599 1.77278 1.42222 1.83615 1.93550 1.86679 1.56940 1.60027 1.55342 1.25213 1.29521 1.73181 1.19418 0.90775 0.85344 1.03037 1.22627 0.74411 0.90215 0.79983 1.90628 1.48891 1.40933 1.58492 1.86778 1.71009 1.32077 1.33388 1.23311 1.01836 0.80215 1.00392 1.23567 0.99839 1.04776 0.90175 1.23373 0.90427 1.03659 1.00201 0.92166 0.93192 0.91661 0.90788 0.90399 0.94331 0.95145 0.92700 0.74052 0.87471 0.92387 0.92144 0.87028 0.86367 0.87178 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 10.03 37.16 0.37 -2.15 16 2 C 0.12 2.14 6.34 -4.04 -0.03 2.11 16 3 N -0.98 -19.53 2.93 -115.66 -0.34 -19.87 16 4 C 0.21 4.77 4.40 -5.20 -0.02 4.75 16 5 C -0.54 -13.40 9.94 -34.44 -0.34 -13.74 16 6 H 0.10 2.63 6.65 -52.49 -0.35 2.28 16 7 C 0.08 2.00 5.47 -17.82 -0.10 1.91 16 8 N -0.89 -24.97 13.96 55.43 0.77 -24.20 16 9 Si 0.86 20.01 27.47 -169.99 -4.67 15.34 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 13 S 2.78 54.70 6.09 -107.50 -0.65 54.04 16 14 O -0.98 -21.50 17.34 -57.17 -0.99 -22.49 16 15 O -0.99 -20.13 15.05 -57.17 -0.86 -20.99 16 16 N -1.08 -18.48 5.96 -0.40 0.00 -18.48 16 17 C 0.11 1.71 2.24 -132.97 -0.30 1.41 16 18 C 0.49 8.67 6.76 36.01 0.24 8.91 16 19 O -0.50 -9.35 16.02 -18.75 -0.30 -9.65 16 20 O -0.32 -5.76 8.89 -39.24 -0.35 -6.11 16 21 C 0.04 0.53 10.35 101.05 1.05 1.57 16 22 C -0.14 -1.86 9.97 -26.73 -0.27 -2.13 16 23 C -0.14 -1.63 10.16 -26.73 -0.27 -1.90 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.04 6.71 -51.93 -0.35 0.70 16 27 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 28 H 0.08 1.34 6.58 -51.93 -0.34 1.00 16 29 H 0.04 0.85 5.67 -51.93 -0.29 0.56 16 30 H 0.03 0.70 6.82 -51.92 -0.35 0.34 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.42 6.82 8.96 -34.47 -0.31 6.51 16 33 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 36 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.12 1.49 7.68 -51.93 -0.40 1.09 16 38 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -32.26 340.55 -7.28 -39.54 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.36 Total: 7.00 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 0.34 Total: 0.74 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.43 Total: -62.55 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -2.50 Total: -59.24 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Atomic # 16 Polarization: 54.70 SS G_CDS: -0.65 Total: 54.04 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.26 -7.28 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336885308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.614 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds