Wall clock time and date at job start Fri Apr 10 2020 14:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46713 * 2 1 4 4 C 1.46496 * 120.00308 * 295.27944 * 3 2 1 5 5 C 1.50699 * 109.47520 * 275.00302 * 4 3 2 6 6 H 1.08001 * 119.99625 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00279 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00523 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99867 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47112 * 90.00002 * 9 7 5 11 11 H 1.48499 * 109.47143 * 210.00378 * 9 7 5 12 12 H 1.48500 * 109.46835 * 330.00116 * 9 7 5 13 13 S 1.65606 * 119.99913 * 115.28543 * 3 2 1 14 14 O 1.42096 * 106.40283 * 225.12257 * 13 3 2 15 15 O 1.42102 * 106.39820 * 358.03899 * 13 3 2 16 16 N 1.65595 * 107.21897 * 111.57650 * 13 3 2 17 17 C 1.46499 * 120.00255 * 260.58971 * 16 13 3 18 18 C 1.50706 * 115.54702 * 58.34500 * 17 16 13 19 19 O 1.20832 * 119.99876 * 217.63107 * 18 17 16 20 20 O 1.34224 * 120.00139 * 37.63376 * 18 17 16 21 21 C 1.45199 * 117.00118 * 175.61975 * 20 18 17 22 22 C 1.52995 * 117.50143 * 272.64004 * 17 16 13 23 23 C 1.53004 * 117.50316 * 204.01178 * 17 16 13 24 24 H 1.08996 * 109.46834 * 175.58323 * 1 2 3 25 25 H 1.09001 * 109.46396 * 295.57709 * 1 2 3 26 26 H 1.08995 * 109.47227 * 55.57744 * 1 2 3 27 27 H 1.09006 * 109.46787 * 240.00331 * 2 1 3 28 28 H 1.09000 * 109.47701 * 120.00457 * 2 1 3 29 29 H 1.08994 * 109.47137 * 35.00473 * 4 3 2 30 30 H 1.09009 * 109.47105 * 155.00269 * 4 3 2 31 31 H 0.96995 * 120.00618 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00005 * 80.59712 * 16 13 3 33 33 H 1.08996 * 109.47420 * 181.88385 * 21 20 18 34 34 H 1.09009 * 109.46665 * 301.87780 * 21 20 18 35 35 H 1.08994 * 109.47657 * 61.87729 * 21 20 18 36 36 H 1.08996 * 117.50124 * 359.97438 * 22 17 16 37 37 H 1.09000 * 117.50022 * 145.02532 * 22 17 16 38 38 H 1.08995 * 117.49859 * 214.97913 * 23 17 16 39 39 H 1.08999 * 117.49318 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7516 2.2525 -1.1472 5 6 2.8061 2.0324 -2.2010 6 1 3.5962 1.3155 -2.0329 7 6 2.7629 2.7469 -3.3794 8 7 3.6828 2.5545 -4.2993 9 14 1.3966 3.9874 -3.6699 10 1 1.8218 5.3186 -3.1678 11 1 1.1090 4.0754 -5.1241 12 1 0.1730 3.5540 -2.9486 13 16 2.8718 1.9578 1.2968 14 8 2.3391 3.2423 1.5888 15 8 2.9199 0.9021 2.2468 16 7 4.4291 2.2015 0.7894 17 6 5.4603 1.2036 1.0843 18 6 5.1936 -0.1823 0.5559 19 8 5.5031 -1.1489 1.2116 20 8 4.6123 -0.3430 -0.6432 21 6 4.4746 -1.7033 -1.1321 22 6 6.1955 1.3211 2.4209 23 6 6.9143 1.6789 1.1185 24 1 -0.3633 -1.0246 -0.0791 25 1 -0.3632 0.4437 0.9270 26 1 -0.3633 0.5809 -0.8477 27 1 1.8933 -0.5138 -0.8901 28 1 1.8935 -0.5139 0.8899 29 1 0.7705 2.0188 -1.5605 30 1 1.7716 3.2937 -0.8251 31 1 3.6522 3.0569 -5.1284 32 1 4.6587 3.0052 0.2970 33 1 4.0207 -1.6891 -2.1230 34 1 5.4581 -2.1699 -1.1896 35 1 3.8420 -2.2721 -0.4508 36 1 5.9122 2.1411 3.0807 37 1 6.4864 0.3959 2.9184 38 1 7.6778 0.9890 0.7592 39 1 7.1035 2.7342 0.9219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336885308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:40 Heat of formation + Delta-G solvation = -146.843036 kcal Electronic energy + Delta-G solvation = -25772.394207 eV Core-core repulsion = 22035.684886 eV Total energy + Delta-G solvation = -3736.709320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71507 -38.85241 -38.33562 -37.76483 -37.27766 -36.99427 -34.54033 -33.19806 -31.65546 -29.06051 -28.93570 -25.32988 -24.66282 -23.61290 -22.93614 -21.53466 -20.36855 -19.23682 -18.89436 -18.81840 -18.33788 -17.91167 -17.17679 -17.14335 -16.39933 -16.00555 -15.73718 -15.35014 -14.97153 -14.55064 -14.33681 -14.21927 -14.00500 -13.78492 -13.48161 -13.44637 -13.27718 -13.17073 -13.02075 -12.71098 -12.58677 -12.55641 -12.48823 -12.22556 -12.14550 -12.06529 -11.72864 -11.68231 -11.45067 -11.34025 -10.66816 -10.52169 -9.71573 -8.15095 -6.16620 -0.40240 0.93025 1.40102 1.45338 1.50758 1.61438 1.86936 2.39873 2.43270 2.66558 3.18008 3.35419 3.51465 3.63630 3.74433 3.94025 4.04367 4.26829 4.34517 4.40230 4.43784 4.62655 4.65389 4.72469 4.83979 4.85552 4.93306 5.00352 5.06890 5.09911 5.34046 5.35673 5.50944 5.57081 5.76947 6.03966 6.47865 6.67494 7.02821 7.46725 8.98782 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.007266 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.868420 B = 3852.388924 C = 4106.778725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.986 5.986 4 C 0.220 3.780 5 C -0.525 4.525 6 H 0.084 0.916 7 C 0.029 3.971 8 N -0.933 5.933 9 Si 0.909 3.091 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.250 1.250 13 S 2.793 3.207 14 O -1.009 7.009 15 O -0.996 6.996 16 N -1.069 6.069 17 C 0.064 3.936 18 C 0.482 3.518 19 O -0.519 6.519 20 O -0.339 6.339 21 C 0.030 3.970 22 C -0.137 4.137 23 C -0.111 4.111 24 H 0.088 0.912 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.028 0.972 31 H 0.262 0.738 32 H 0.428 0.572 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.790 -4.145 8.546 9.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.826 5.826 4 C 0.096 3.904 5 C -0.564 4.564 6 H 0.102 0.898 7 C -0.170 4.170 8 N -0.574 5.574 9 Si 0.734 3.266 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.173 1.173 13 S 2.802 3.198 14 O -0.992 6.992 15 O -0.981 6.981 16 N -0.828 5.828 17 C -0.028 4.028 18 C 0.325 3.675 19 O -0.408 6.408 20 O -0.254 6.254 21 C -0.063 4.063 22 C -0.175 4.175 23 C -0.150 4.150 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.264 0.736 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.477 -4.405 9.510 10.769 hybrid contribution -0.428 0.708 -1.443 1.663 sum 2.049 -3.697 8.067 9.107 Atomic orbital electron populations 1.22114 0.94690 1.03327 1.02004 1.21291 0.95536 0.81425 1.02641 1.57344 1.69150 1.21296 1.34843 1.19355 0.97822 0.88825 0.84434 1.21866 1.11497 1.23167 0.99909 0.89802 1.25460 0.97216 0.98332 0.96028 1.70000 1.35958 1.43206 1.08238 0.86303 0.81997 0.80790 0.77478 1.19841 1.21445 1.17345 1.01344 0.72790 0.72493 0.73150 1.93562 1.78230 1.43282 1.84144 1.93531 1.86983 1.57115 1.60438 1.55054 1.24749 1.29922 1.73078 1.19824 0.92557 0.84451 1.05981 1.23025 0.73912 0.90938 0.79672 1.90602 1.49766 1.41601 1.58803 1.86760 1.71104 1.33757 1.33748 1.23491 1.02862 0.79250 1.00709 1.23718 0.98489 1.05429 0.89874 1.23611 0.87797 1.05175 0.98388 0.89296 0.92922 0.92415 0.90993 0.90289 0.93663 0.95411 0.92882 0.73631 0.87048 0.91167 0.91369 0.85558 0.86203 0.85840 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 10.03 71.98 0.72 -3.93 16 2 C 0.12 3.95 6.34 86.38 0.55 4.50 16 3 N -0.99 -38.37 2.93 -519.84 -1.52 -39.89 16 4 C 0.22 9.56 4.40 85.63 0.38 9.93 16 5 C -0.53 -25.89 9.94 25.60 0.25 -25.64 16 6 H 0.08 4.40 6.65 -2.91 -0.02 4.38 16 7 C 0.03 1.49 5.47 84.65 0.46 1.95 16 8 N -0.93 -52.52 13.96 21.45 0.30 -52.22 16 9 Si 0.91 40.44 27.47 68.60 1.88 42.33 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 13 S 2.79 107.50 6.09 -56.49 -0.34 107.16 16 14 O -1.01 -43.31 17.34 -128.00 -2.22 -45.53 16 15 O -1.00 -39.78 15.05 -128.00 -1.93 -41.71 16 16 N -1.07 -35.72 5.96 -155.18 -0.93 -36.65 16 17 C 0.06 1.96 2.24 2.86 0.01 1.97 16 18 C 0.48 16.85 6.76 71.24 0.48 17.33 16 19 O -0.52 -18.98 16.02 21.95 0.35 -18.63 16 20 O -0.34 -12.21 8.89 -51.36 -0.46 -12.66 16 21 C 0.03 0.87 10.35 113.37 1.17 2.04 16 22 C -0.14 -3.23 9.97 30.59 0.31 -2.92 16 23 C -0.11 -2.35 10.16 30.60 0.31 -2.04 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.74 6.71 -2.39 -0.02 1.72 16 27 H 0.07 2.44 7.93 -2.38 -0.02 2.43 16 28 H 0.08 2.66 6.58 -2.39 -0.02 2.64 16 29 H 0.05 1.92 5.67 -2.39 -0.01 1.91 16 30 H 0.03 1.24 6.82 -2.38 -0.02 1.22 16 31 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.43 13.39 8.96 -96.75 -0.87 12.53 16 33 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 36 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.12 2.80 7.68 -2.39 -0.02 2.78 16 38 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -67.68 340.55 -0.06 -67.74 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.15 Total: 26.87 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.64 Total: 3.19 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -2.15 Total: -128.76 kcal Atomic # 8 Polarization: -114.28 SS G_CDS: -4.25 Total: -118.53 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.88 Total: 42.33 kcal Atomic # 16 Polarization: 107.50 SS G_CDS: -0.34 Total: 107.16 kcal Total: -67.68 -0.06 -67.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336885308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.102 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds