Wall clock time and date at job start Fri Apr 10 2020 14:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47145 * 2 1 4 4 C 1.50695 * 109.46895 * 239.99921 * 2 1 3 5 5 O 1.20826 * 120.00366 * 274.36266 * 4 2 1 6 6 O 1.34236 * 119.99993 * 94.36953 * 4 2 1 7 7 C 1.53004 * 109.47039 * 120.00189 * 2 1 3 8 8 N 1.46497 * 115.54820 * 182.53553 * 7 2 1 9 9 S 1.65591 * 120.00627 * 65.57791 * 8 7 2 10 10 O 1.42108 * 106.40251 * 310.40319 * 9 8 7 11 11 O 1.42101 * 106.40476 * 177.48477 * 9 8 7 12 12 N 1.65597 * 107.22044 * 63.94309 * 9 8 7 13 13 C 1.46499 * 119.99931 * 263.01896 * 12 9 8 14 14 C 1.46501 * 120.00053 * 83.01023 * 12 9 8 15 15 C 1.50702 * 109.46608 * 95.00505 * 14 12 9 16 16 H 1.07996 * 120.00154 * 359.97438 * 15 14 12 17 17 C 1.37885 * 119.99636 * 180.02562 * 15 14 12 18 18 N 1.31509 * 120.00114 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47182 * 59.99496 * 19 17 15 21 21 H 1.48501 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47052 * 299.99501 * 19 17 15 23 23 C 1.53001 * 117.49756 * 328.19887 * 7 2 1 24 24 C 1.52994 * 117.49835 * 36.85919 * 7 2 1 25 25 H 1.08996 * 109.47364 * 181.78466 * 1 2 3 26 26 H 1.09006 * 109.47027 * 301.78863 * 1 2 3 27 27 H 1.08999 * 109.47035 * 61.78267 * 1 2 3 28 28 H 0.96697 * 117.00219 * 179.97438 * 6 4 2 29 29 H 0.97008 * 119.99122 * 245.57797 * 8 7 2 30 30 H 1.09000 * 109.46967 * 274.78136 * 13 12 9 31 31 H 1.08996 * 109.47530 * 34.78120 * 13 12 9 32 32 H 1.09008 * 109.47230 * 154.78325 * 13 12 9 33 33 H 1.08996 * 109.47238 * 214.99969 * 14 12 9 34 34 H 1.09005 * 109.47265 * 335.00753 * 14 12 9 35 35 H 0.97000 * 120.00116 * 180.02562 * 18 17 15 36 36 H 1.08999 * 117.49705 * 215.00616 * 23 7 2 37 37 H 1.09006 * 117.50018 * 0.02562 * 23 7 2 38 38 H 1.08996 * 117.50238 * 359.97438 * 24 7 2 39 39 H 1.09002 * 117.49611 * 145.00015 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.1586 -1.9120 -1.2251 6 8 2.3395 -0.0082 -2.3325 7 6 2.0400 -0.7213 1.2493 8 7 3.4955 -0.7484 1.4132 9 16 4.3264 0.6607 1.6699 10 8 3.8876 1.5728 0.6724 11 8 5.6888 0.2971 1.8453 12 7 3.8155 1.2736 3.1210 13 6 2.7778 2.3072 3.1551 14 6 4.4012 0.7822 4.3707 15 6 5.5257 1.6933 4.7908 16 1 5.7790 2.5522 4.1871 17 6 6.2318 1.4297 5.9454 18 7 5.9236 0.3836 6.6803 19 14 7.6251 2.5595 6.4666 20 1 7.0982 3.9323 6.6737 21 1 8.2189 2.0613 7.7333 22 1 8.6657 2.5833 5.4073 23 6 1.1880 -0.6272 2.5166 24 6 1.2517 -1.9403 1.7324 25 1 -0.3634 -1.0271 0.0320 26 1 -0.3633 0.5414 0.8736 27 1 -0.3633 0.4859 -0.9055 28 1 2.6581 -0.5077 -3.0967 29 1 3.9726 -1.5921 1.3713 30 1 3.2368 3.2872 3.0254 31 1 2.0633 2.1313 2.3510 32 1 2.2613 2.2720 4.1144 33 1 3.6374 0.7656 5.1481 34 1 4.7876 -0.2258 4.2192 35 1 6.4201 0.1984 7.4928 36 1 1.7105 -0.5856 3.4723 37 1 0.2639 -0.0518 2.4603 38 1 0.3696 -2.2282 1.1606 39 1 1.8161 -2.7626 2.1723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593273063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:22 Heat of formation + Delta-G solvation = -136.916316 kcal Electronic energy + Delta-G solvation = -25049.411958 eV Core-core repulsion = 21313.133093 eV Total energy + Delta-G solvation = -3736.278865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62877 -38.51421 -36.58127 -36.01845 -35.49075 -35.19274 -32.68533 -32.43983 -31.60012 -27.78845 -25.67545 -25.05645 -22.81410 -22.45512 -22.31134 -19.80255 -18.58147 -18.18561 -17.29034 -16.94222 -16.55407 -16.40853 -15.98743 -15.81709 -15.31072 -14.89100 -14.31767 -13.64561 -13.52472 -13.30443 -13.05227 -12.81894 -12.44394 -12.30329 -12.11333 -12.04399 -11.69602 -11.62547 -11.48924 -11.38676 -11.27627 -11.22399 -11.19628 -11.08686 -10.72254 -10.54286 -10.44969 -10.01986 -9.91348 -9.79165 -9.31253 -8.44604 -8.07788 -6.06919 -4.10501 1.19025 2.18084 2.89293 3.33903 3.36840 3.37543 3.42948 3.72944 4.04055 4.37206 4.45020 4.61427 4.80193 4.82260 4.94367 5.07348 5.18120 5.28003 5.41128 5.52269 5.56958 5.60204 5.70467 5.84633 6.00352 6.04628 6.12133 6.17165 6.31827 6.46089 6.50842 7.06632 7.21337 7.38665 7.59323 7.89089 7.90828 8.19707 8.91640 9.54733 11.01610 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.025867 B = 0.004673 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.202936 B = 5990.788886 C = 6290.065355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 H 0.134 0.866 4 C 0.491 3.509 5 O -0.511 6.511 6 O -0.512 6.512 7 C 0.106 3.894 8 N -1.100 6.100 9 S 2.780 3.220 10 O -0.994 6.994 11 O -0.963 6.963 12 N -0.993 5.993 13 C 0.109 3.891 14 C 0.260 3.740 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.897 5.897 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.172 4.172 24 C -0.149 4.149 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.406 0.594 29 H 0.416 0.584 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.095 -2.295 -11.931 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 H 0.151 0.849 4 C 0.333 3.667 5 O -0.399 6.399 6 O -0.323 6.323 7 C 0.015 3.985 8 N -0.856 5.856 9 S 2.788 3.212 10 O -0.978 6.978 11 O -0.947 6.947 12 N -0.836 5.836 13 C -0.038 4.038 14 C 0.138 3.862 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.537 5.537 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.211 4.211 24 C -0.188 4.188 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.264 0.736 29 H 0.250 0.750 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.559 -1.943 -11.984 18.200 hybrid contribution 1.160 -0.369 0.117 1.223 sum -12.399 -2.312 -11.867 17.317 Atomic orbital electron populations 1.21943 0.91019 1.03529 1.03953 1.20965 0.97721 1.02635 0.87725 0.84875 1.23297 0.73355 0.86016 0.84062 1.90683 1.49775 1.16036 1.83400 1.84605 1.77835 1.45560 1.24286 1.19884 0.79955 1.05020 0.93635 1.55772 1.13653 1.27075 1.89055 1.02048 0.73156 0.72822 0.73149 1.93506 1.83013 1.62999 1.58238 1.93655 1.31584 1.83279 1.86152 1.57567 1.52020 1.50209 1.23842 1.21234 0.89791 0.91104 1.01648 1.19044 0.93271 0.94539 0.79382 1.21456 1.16069 1.11389 1.07779 0.92214 1.24924 0.97338 0.95476 0.96273 1.69900 1.41293 1.27077 1.15384 0.86577 0.82407 0.80771 0.77823 1.20167 1.21191 1.20005 1.23756 1.01329 1.00331 0.95681 1.23254 1.01666 0.91774 1.02093 0.91203 0.89827 0.91102 0.73619 0.74986 0.93360 0.92973 0.91199 0.94606 0.94911 0.92652 0.86759 0.87256 0.87673 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.24 37.16 0.31 -0.91 16 2 C -0.07 -0.85 2.70 -91.77 -0.25 -1.10 16 3 H 0.13 1.81 6.10 -51.93 -0.32 1.50 16 4 C 0.49 6.52 7.21 36.00 0.26 6.78 16 5 O -0.51 -7.65 16.94 -18.75 -0.32 -7.96 16 6 O -0.51 -5.88 13.42 -39.27 -0.53 -6.40 16 7 C 0.11 1.37 1.70 -131.82 -0.22 1.15 16 8 N -1.10 -17.23 5.83 0.54 0.00 -17.23 16 9 S 2.78 54.76 6.03 -107.50 -0.65 54.11 16 10 O -0.99 -19.65 14.61 -57.17 -0.84 -20.49 16 11 O -0.96 -23.43 17.37 -57.17 -0.99 -24.43 16 12 N -0.99 -19.76 3.23 -123.05 -0.40 -20.15 16 13 C 0.11 1.76 10.27 59.85 0.61 2.37 16 14 C 0.26 6.30 5.11 -5.19 -0.03 6.28 16 15 C -0.53 -14.70 9.38 -34.44 -0.32 -15.02 16 16 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 19 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.17 -1.87 9.74 -26.69 -0.26 -2.13 16 24 C -0.15 -1.61 9.47 -26.70 -0.25 -1.86 16 25 H 0.07 0.54 6.24 -51.93 -0.32 0.21 16 26 H 0.08 0.55 6.40 -51.93 -0.33 0.22 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.41 2.78 9.10 45.56 0.41 3.20 16 29 H 0.42 6.17 8.96 -34.47 -0.31 5.86 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.69 7.78 -51.93 -0.40 0.28 16 32 H 0.07 1.04 7.89 -51.92 -0.41 0.63 16 33 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 34 H 0.03 0.85 7.80 -51.93 -0.41 0.45 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.11 0.89 6.20 -51.93 -0.32 0.57 16 38 H 0.11 0.96 6.30 -51.93 -0.33 0.63 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -35.64 340.24 -7.51 -43.15 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.38 Total: 5.46 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.25 Total: -2.80 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.34 Total: -62.59 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -2.67 Total: -59.28 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.65 Total: 54.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.64 -7.51 -43.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593273063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.767 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds