Wall clock time and date at job start Fri Apr 10 2020 14:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47145 * 2 1 4 4 C 1.50695 * 109.46895 * 239.99921 * 2 1 3 5 5 O 1.20826 * 120.00366 * 274.36266 * 4 2 1 6 6 O 1.34236 * 119.99993 * 94.36953 * 4 2 1 7 7 C 1.53004 * 109.47039 * 120.00189 * 2 1 3 8 8 N 1.46497 * 115.54820 * 182.53553 * 7 2 1 9 9 S 1.65591 * 120.00627 * 65.57791 * 8 7 2 10 10 O 1.42108 * 106.40251 * 310.40319 * 9 8 7 11 11 O 1.42101 * 106.40476 * 177.48477 * 9 8 7 12 12 N 1.65597 * 107.22044 * 63.94309 * 9 8 7 13 13 C 1.46499 * 119.99931 * 263.01896 * 12 9 8 14 14 C 1.46501 * 120.00053 * 83.01023 * 12 9 8 15 15 C 1.50702 * 109.46608 * 95.00505 * 14 12 9 16 16 H 1.07996 * 120.00154 * 359.97438 * 15 14 12 17 17 C 1.37885 * 119.99636 * 180.02562 * 15 14 12 18 18 N 1.31509 * 120.00114 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47182 * 59.99496 * 19 17 15 21 21 H 1.48501 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47052 * 299.99501 * 19 17 15 23 23 C 1.53001 * 117.49756 * 328.19887 * 7 2 1 24 24 C 1.52994 * 117.49835 * 36.85919 * 7 2 1 25 25 H 1.08996 * 109.47364 * 181.78466 * 1 2 3 26 26 H 1.09006 * 109.47027 * 301.78863 * 1 2 3 27 27 H 1.08999 * 109.47035 * 61.78267 * 1 2 3 28 28 H 0.96697 * 117.00219 * 179.97438 * 6 4 2 29 29 H 0.97008 * 119.99122 * 245.57797 * 8 7 2 30 30 H 1.09000 * 109.46967 * 274.78136 * 13 12 9 31 31 H 1.08996 * 109.47530 * 34.78120 * 13 12 9 32 32 H 1.09008 * 109.47230 * 154.78325 * 13 12 9 33 33 H 1.08996 * 109.47238 * 214.99969 * 14 12 9 34 34 H 1.09005 * 109.47265 * 335.00753 * 14 12 9 35 35 H 0.97000 * 120.00116 * 180.02562 * 18 17 15 36 36 H 1.08999 * 117.49705 * 215.00616 * 23 7 2 37 37 H 1.09006 * 117.50018 * 0.02562 * 23 7 2 38 38 H 1.08996 * 117.50238 * 359.97438 * 24 7 2 39 39 H 1.09002 * 117.49611 * 145.00015 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.1586 -1.9120 -1.2251 6 8 2.3395 -0.0082 -2.3325 7 6 2.0400 -0.7213 1.2493 8 7 3.4955 -0.7484 1.4132 9 16 4.3264 0.6607 1.6699 10 8 3.8876 1.5728 0.6724 11 8 5.6888 0.2971 1.8453 12 7 3.8155 1.2736 3.1210 13 6 2.7778 2.3072 3.1551 14 6 4.4012 0.7822 4.3707 15 6 5.5257 1.6933 4.7908 16 1 5.7790 2.5522 4.1871 17 6 6.2318 1.4297 5.9454 18 7 5.9236 0.3836 6.6803 19 14 7.6251 2.5595 6.4666 20 1 7.0982 3.9323 6.6737 21 1 8.2189 2.0613 7.7333 22 1 8.6657 2.5833 5.4073 23 6 1.1880 -0.6272 2.5166 24 6 1.2517 -1.9403 1.7324 25 1 -0.3634 -1.0271 0.0320 26 1 -0.3633 0.5414 0.8736 27 1 -0.3633 0.4859 -0.9055 28 1 2.6581 -0.5077 -3.0967 29 1 3.9726 -1.5921 1.3713 30 1 3.2368 3.2872 3.0254 31 1 2.0633 2.1313 2.3510 32 1 2.2613 2.2720 4.1144 33 1 3.6374 0.7656 5.1481 34 1 4.7876 -0.2258 4.2192 35 1 6.4201 0.1984 7.4928 36 1 1.7105 -0.5856 3.4723 37 1 0.2639 -0.0518 2.4603 38 1 0.3696 -2.2282 1.1606 39 1 1.8161 -2.7626 2.1723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593273063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:21 Heat of formation + Delta-G solvation = -165.498154 kcal Electronic energy + Delta-G solvation = -25050.651360 eV Core-core repulsion = 21313.133093 eV Total energy + Delta-G solvation = -3737.518267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59177 -39.48108 -38.22918 -37.18638 -36.98391 -36.87387 -34.49076 -33.74541 -32.55677 -29.64013 -26.75620 -26.43495 -24.21428 -23.71997 -23.37554 -20.95436 -19.91623 -19.19279 -18.88119 -18.38063 -18.25699 -17.78342 -17.12697 -16.88819 -16.71396 -16.29238 -15.84319 -15.09712 -14.95562 -14.47334 -14.21160 -13.99348 -13.91481 -13.74044 -13.32787 -13.26840 -13.06136 -13.05064 -12.94976 -12.91176 -12.61695 -12.48332 -12.46197 -12.38352 -12.23234 -12.05274 -11.93158 -11.75998 -11.45372 -10.89130 -10.58897 -10.41466 -9.76754 -8.19763 -6.30708 -0.34811 1.19923 1.39159 1.42604 1.49552 1.96353 2.04511 2.40459 2.56843 2.84466 3.11243 3.38965 3.49507 3.71574 3.86169 4.00046 4.15807 4.30486 4.33015 4.58625 4.73598 4.75943 4.84587 4.89498 4.96506 5.06784 5.11027 5.14070 5.22114 5.30185 5.34299 5.47195 5.60723 5.70533 5.84810 6.04574 6.13546 6.77082 7.01214 7.37886 8.87223 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.025867 B = 0.004673 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.202936 B = 5990.788886 C = 6290.065355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 H 0.118 0.882 4 C 0.486 3.514 5 O -0.535 6.535 6 O -0.516 6.516 7 C 0.076 3.924 8 N -1.092 6.092 9 S 2.795 3.205 10 O -0.996 6.996 11 O -1.018 7.018 12 N -0.995 5.995 13 C 0.099 3.901 14 C 0.276 3.724 15 C -0.549 4.549 16 H 0.049 0.951 17 C 0.014 3.986 18 N -0.923 5.923 19 Si 0.952 3.048 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.281 1.281 23 C -0.162 4.162 24 C -0.137 4.137 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.423 0.577 29 H 0.418 0.582 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.010 0.990 35 H 0.267 0.733 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.128 0.872 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.041 -1.747 -12.158 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 H 0.136 0.864 4 C 0.329 3.671 5 O -0.424 6.424 6 O -0.329 6.329 7 C -0.014 4.014 8 N -0.851 5.851 9 S 2.803 3.197 10 O -0.980 6.980 11 O -1.002 7.002 12 N -0.837 5.837 13 C -0.046 4.046 14 C 0.152 3.848 15 C -0.588 4.588 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.777 3.223 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.207 1.207 23 C -0.200 4.200 24 C -0.175 4.175 25 H 0.097 0.903 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.284 0.716 29 H 0.253 0.747 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.161 0.839 38 H 0.146 0.854 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.521 -1.366 -12.237 19.812 hybrid contribution 1.712 -0.572 0.084 1.807 sum -13.809 -1.938 -12.153 18.497 Atomic orbital electron populations 1.22023 0.87833 1.04662 1.05604 1.21067 1.00308 1.01156 0.86740 0.86409 1.23641 0.72869 0.85862 0.84683 1.90669 1.50929 1.16932 1.83916 1.84572 1.77577 1.45911 1.24829 1.20315 0.78167 1.07632 0.95311 1.55373 1.15367 1.25671 1.88691 1.01401 0.72144 0.73195 0.72951 1.93498 1.82800 1.63657 1.58009 1.93576 1.35520 1.84252 1.86825 1.57397 1.52751 1.51369 1.22205 1.21515 0.89471 0.89705 1.03903 1.18604 0.92458 0.92813 0.80932 1.21824 1.17394 1.11675 1.07906 0.93250 1.25690 0.99572 0.96882 0.96437 1.69983 1.42322 1.28253 1.15764 0.85701 0.79424 0.79688 0.77468 1.18721 1.20105 1.20656 1.23866 1.01684 1.00672 0.93753 1.23364 1.01527 0.91196 1.01442 0.90310 0.87635 0.90054 0.71581 0.74690 0.94052 0.89573 0.89723 0.94592 0.97226 0.92407 0.88485 0.83851 0.85429 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.24 71.98 0.59 -1.27 16 2 C -0.07 -1.59 2.70 -11.54 -0.03 -1.62 16 3 H 0.12 2.98 6.10 -2.38 -0.01 2.97 16 4 C 0.49 12.23 7.21 71.23 0.51 12.74 16 5 O -0.53 -15.40 16.94 21.96 0.37 -15.03 16 6 O -0.52 -11.17 13.42 -51.48 -0.69 -11.86 16 7 C 0.08 1.83 1.70 3.60 0.01 1.83 16 8 N -1.09 -34.05 5.83 -152.22 -0.89 -34.94 16 9 S 2.79 110.98 6.03 -56.49 -0.34 110.64 16 10 O -1.00 -38.95 14.61 -128.00 -1.87 -40.82 16 11 O -1.02 -51.24 17.37 -128.00 -2.22 -53.46 16 12 N -0.99 -39.45 3.23 -543.22 -1.75 -41.20 16 13 C 0.10 3.06 10.27 127.77 1.31 4.37 16 14 C 0.28 13.58 5.11 85.63 0.44 14.02 16 15 C -0.55 -30.96 9.38 25.60 0.24 -30.72 16 16 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 17 C 0.01 0.78 5.46 84.66 0.46 1.24 16 18 N -0.92 -53.74 13.29 21.45 0.28 -53.46 16 19 Si 0.95 44.73 29.54 68.60 2.03 46.76 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 C -0.16 -3.07 9.74 30.62 0.30 -2.77 16 24 C -0.14 -2.62 9.47 30.62 0.29 -2.33 16 25 H 0.08 0.90 6.24 -2.39 -0.01 0.88 16 26 H 0.11 0.89 6.40 -2.38 -0.02 0.88 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.42 5.33 9.10 -74.06 -0.67 4.65 16 29 H 0.42 12.64 8.96 -96.74 -0.87 11.77 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 2.04 7.78 -2.39 -0.02 2.02 16 32 H 0.08 2.35 7.89 -2.38 -0.02 2.33 16 33 H 0.04 1.76 7.94 -2.39 -0.02 1.74 16 34 H 0.01 0.52 7.80 -2.38 -0.02 0.50 16 35 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.14 1.70 6.20 -2.38 -0.01 1.69 16 38 H 0.13 1.88 6.30 -2.39 -0.02 1.87 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -77.45 340.24 -1.40 -78.85 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.44 Total: 19.04 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 4.12 Total: -4.52 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -2.35 Total: -129.59 kcal Atomic # 8 Polarization: -116.76 SS G_CDS: -4.41 Total: -121.17 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 110.98 SS G_CDS: -0.34 Total: 110.64 kcal Total: -77.45 -1.40 -78.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593273063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.653 kcal (2) G-P(sol) polarization free energy of solvation -77.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds