Wall clock time and date at job start Fri Apr 10 2020 14:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47374 * 2 1 4 4 C 1.46499 * 119.99923 * 274.20735 * 3 2 1 5 5 C 1.50704 * 109.46899 * 294.47564 * 4 3 2 6 6 H 1.07997 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99885 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00237 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99993 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46872 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47104 * 119.99887 * 9 7 5 12 12 H 1.48498 * 109.47112 * 240.00543 * 9 7 5 13 13 S 1.65594 * 119.99812 * 94.19785 * 3 2 1 14 14 O 1.42108 * 106.40143 * 169.69727 * 13 3 2 15 15 O 1.42094 * 106.40061 * 36.78158 * 13 3 2 16 16 N 1.65596 * 107.22030 * 283.23632 * 13 3 2 17 17 C 1.46496 * 120.00415 * 290.89286 * 16 13 3 18 18 C 1.52995 * 110.41483 * 51.46182 * 17 16 13 19 19 C 1.54493 * 110.36872 * 173.76155 * 17 16 13 20 20 C 1.54570 * 102.14620 * 103.49363 * 19 17 16 21 21 O 1.45841 * 104.44271 * 26.84806 * 20 19 17 22 22 C 1.34062 * 109.90753 * 329.39559 * 21 20 19 23 23 O 1.20828 * 125.09494 * 200.57203 * 22 21 20 24 24 H 1.08997 * 109.47107 * 183.92982 * 1 2 3 25 25 H 1.09003 * 109.46587 * 303.92523 * 1 2 3 26 26 H 1.08994 * 109.47288 * 63.92638 * 1 2 3 27 27 H 1.09011 * 109.46621 * 240.00493 * 2 1 3 28 28 H 1.08999 * 109.47629 * 120.00415 * 2 1 3 29 29 H 1.08997 * 109.48002 * 54.47910 * 4 3 2 30 30 H 1.09006 * 109.47309 * 174.48295 * 4 3 2 31 31 H 0.96996 * 120.00196 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99543 * 110.89412 * 16 13 3 33 33 H 1.09007 * 109.47386 * 288.13654 * 18 17 16 34 34 H 1.09000 * 109.47353 * 48.13394 * 18 17 16 35 35 H 1.08996 * 109.47437 * 168.13444 * 18 17 16 36 36 H 1.08993 * 110.86882 * 345.32809 * 19 17 16 37 37 H 1.09003 * 111.04539 * 221.73542 * 19 17 16 38 38 H 1.08999 * 110.44107 * 268.10784 * 20 19 17 39 39 H 1.09000 * 110.54917 * 145.63946 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1749 2.1028 -1.2653 5 6 3.2541 1.4468 -2.0876 6 1 3.7714 0.5790 -1.7060 7 6 3.5811 1.9546 -3.3270 8 7 2.9516 3.0117 -3.7915 9 14 4.9184 1.1411 -4.3466 10 1 5.4684 -0.0216 -3.6042 11 1 4.3456 0.6795 -5.6365 12 1 6.0047 2.1190 -4.6089 13 16 2.3934 2.1268 1.4303 14 8 3.0545 3.3379 1.0902 15 8 2.9742 1.1313 2.2614 16 7 0.9646 2.5593 2.1470 17 6 0.1424 3.6203 1.5602 18 6 -0.0980 3.3489 0.0739 19 6 -1.2032 3.7349 2.3105 20 6 -0.9857 4.9958 3.1777 21 8 -0.0049 5.7815 2.4377 22 6 0.8069 4.9668 1.7489 23 8 1.9028 5.2646 1.3362 24 1 -0.3633 -1.0252 0.0704 25 1 -0.3632 0.5736 0.8528 26 1 -0.3633 0.4517 -0.9230 27 1 1.8933 -0.5138 -0.8901 28 1 1.8935 -0.5139 0.8899 29 1 1.2343 2.0797 -1.8156 30 1 2.4515 3.1374 -1.0618 31 1 3.1819 3.3692 -4.6633 32 1 0.6721 2.1100 2.9554 33 1 0.8251 3.5186 -0.4805 34 1 -0.4171 2.3152 -0.0598 35 1 -0.8732 4.0192 -0.2972 36 1 -1.3751 2.8587 2.9355 37 1 -2.0287 3.8807 1.6137 38 1 -0.5930 4.7213 4.1568 39 1 -1.9169 5.5521 3.2844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810102408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:44 Heat of formation + Delta-G solvation = -137.285402 kcal Electronic energy + Delta-G solvation = -25779.980006 eV Core-core repulsion = 22043.685136 eV Total energy + Delta-G solvation = -3736.294870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11628 -37.25869 -36.66477 -36.43845 -35.67384 -35.11351 -32.64565 -31.12156 -30.07382 -29.25372 -26.63300 -25.42655 -23.14341 -22.70768 -21.64955 -20.63022 -18.78034 -17.56913 -17.38705 -16.76196 -16.63678 -16.30906 -16.00388 -15.41248 -14.76566 -14.42115 -14.32458 -13.87908 -13.69208 -13.32276 -13.01997 -12.90449 -12.55784 -12.33966 -12.19266 -12.06150 -11.86555 -11.72384 -11.55018 -11.27127 -11.22252 -11.10790 -10.96984 -10.80963 -10.61991 -10.54294 -10.46229 -10.27701 -9.93141 -9.53239 -9.18963 -8.45696 -8.03118 -6.05885 -4.10117 1.15540 2.26281 3.26840 3.30603 3.38986 3.41518 3.45006 3.78881 4.01925 4.22041 4.40622 4.44330 4.59664 4.96359 5.02160 5.18569 5.25714 5.29341 5.40101 5.43599 5.56327 5.66952 5.69998 5.82848 5.89829 6.04968 6.28236 6.43473 6.56747 6.68252 6.74899 6.98263 7.28516 7.45090 7.65171 7.76848 7.91547 8.24544 8.93629 9.55021 11.02775 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.005828 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.816428 B = 4802.990414 C = 5186.755630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.119 3.881 3 N -0.987 5.987 4 C 0.245 3.755 5 C -0.531 4.531 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.762 3.238 14 O -0.937 6.937 15 O -0.995 6.995 16 N -1.116 6.116 17 C 0.131 3.869 18 C -0.195 4.195 19 C -0.154 4.154 20 C 0.053 3.947 21 O -0.350 6.350 22 C 0.447 3.553 23 O -0.375 6.375 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.263 0.737 32 H 0.411 0.589 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.080 -1.393 12.502 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.008 4.008 3 N -0.830 5.830 4 C 0.123 3.877 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.770 3.230 14 O -0.920 6.920 15 O -0.979 6.979 16 N -0.875 5.875 17 C 0.040 3.960 18 C -0.252 4.252 19 C -0.192 4.192 20 C -0.022 4.022 21 O -0.267 6.267 22 C 0.279 3.721 23 O -0.250 6.250 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.245 0.755 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.556 -0.604 12.325 17.604 hybrid contribution 0.019 -0.824 -0.392 0.913 sum -12.537 -1.429 11.932 17.366 Atomic orbital electron populations 1.22351 0.97533 1.01277 1.02074 1.21101 0.92766 0.83382 1.03555 1.57682 1.81008 1.21485 1.22825 1.19297 0.97169 0.92719 0.78474 1.21480 1.19851 1.14116 1.01635 0.91913 1.24945 0.96532 0.94930 0.97628 1.69928 1.41533 1.22425 1.19105 0.86472 0.81786 0.79461 0.79879 1.19692 1.21005 1.20869 1.02678 0.73280 0.73916 0.73093 1.93778 1.70986 1.44269 1.82962 1.93550 1.74527 1.61080 1.68764 1.56454 1.43293 1.47538 1.40201 1.21258 0.91083 0.86661 0.97025 1.22966 1.06371 1.04841 0.91024 1.23275 0.96536 0.99444 0.99978 1.24068 0.92015 0.91427 0.94720 1.87083 1.43801 1.36582 1.59224 1.23538 0.84694 0.86490 0.77333 1.91017 1.13736 1.76871 1.43358 0.92333 0.93099 0.91716 0.89137 0.91328 0.95235 0.92173 0.92713 0.75547 0.88029 0.88796 0.90357 0.87983 0.87822 0.89911 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.80 37.16 0.33 -1.88 16 2 C 0.12 1.97 6.29 -4.04 -0.03 1.94 16 3 N -0.99 -19.70 1.93 -115.65 -0.22 -19.92 16 4 C 0.25 5.95 3.34 -5.19 -0.02 5.94 16 5 C -0.53 -14.52 8.64 -34.44 -0.30 -14.82 16 6 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 S 2.76 54.53 5.62 -107.50 -0.60 53.92 16 14 O -0.94 -22.79 12.60 -67.11 -0.85 -23.63 16 15 O -1.00 -21.03 17.04 -57.17 -0.97 -22.00 16 16 N -1.12 -15.39 5.47 0.49 0.00 -15.39 16 17 C 0.13 1.74 1.07 -131.88 -0.14 1.60 16 18 C -0.19 -2.82 6.70 37.16 0.25 -2.57 16 19 C -0.15 -1.16 6.48 -25.12 -0.16 -1.32 16 20 C 0.05 0.41 7.90 37.98 0.30 0.71 16 21 O -0.35 -4.85 11.05 -38.47 -0.43 -5.28 16 22 C 0.45 7.63 7.34 36.32 0.27 7.89 16 23 O -0.38 -8.43 14.57 -26.71 -0.39 -8.82 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.56 7.18 -51.93 -0.37 0.18 16 26 H 0.06 0.88 7.60 -51.93 -0.39 0.48 16 27 H 0.09 1.61 7.40 -51.92 -0.38 1.23 16 28 H 0.07 1.08 7.17 -51.93 -0.37 0.70 16 29 H 0.03 0.71 7.53 -51.93 -0.39 0.32 16 30 H 0.06 1.65 5.66 -51.93 -0.29 1.35 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.41 4.14 8.37 -34.46 -0.29 3.85 16 33 H 0.10 1.94 4.16 -51.93 -0.22 1.73 16 34 H 0.09 1.23 4.64 -51.93 -0.24 0.99 16 35 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 36 H 0.10 0.51 7.68 -51.93 -0.40 0.11 16 37 H 0.10 0.62 7.66 -51.93 -0.40 0.22 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -36.71 317.78 -7.52 -44.23 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.97 Total: 1.52 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 0.40 Total: -0.85 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.52 Total: -60.43 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: -2.63 Total: -59.73 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.60 Total: 53.92 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.71 -7.52 -44.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810102408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.057 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds