Wall clock time and date at job start Fri Apr 10 2020 14:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47374 * 2 1 4 4 C 1.46499 * 119.99923 * 274.20735 * 3 2 1 5 5 C 1.50704 * 109.46899 * 294.47564 * 4 3 2 6 6 H 1.07997 * 120.00311 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99885 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00237 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99993 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46872 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47104 * 119.99887 * 9 7 5 12 12 H 1.48498 * 109.47112 * 240.00543 * 9 7 5 13 13 S 1.65594 * 119.99812 * 94.19785 * 3 2 1 14 14 O 1.42108 * 106.40143 * 169.69727 * 13 3 2 15 15 O 1.42094 * 106.40061 * 36.78158 * 13 3 2 16 16 N 1.65596 * 107.22030 * 283.23632 * 13 3 2 17 17 C 1.46496 * 120.00415 * 290.89286 * 16 13 3 18 18 C 1.52995 * 110.41483 * 51.46182 * 17 16 13 19 19 C 1.54493 * 110.36872 * 173.76155 * 17 16 13 20 20 C 1.54570 * 102.14620 * 103.49363 * 19 17 16 21 21 O 1.45841 * 104.44271 * 26.84806 * 20 19 17 22 22 C 1.34062 * 109.90753 * 329.39559 * 21 20 19 23 23 O 1.20828 * 125.09494 * 200.57203 * 22 21 20 24 24 H 1.08997 * 109.47107 * 183.92982 * 1 2 3 25 25 H 1.09003 * 109.46587 * 303.92523 * 1 2 3 26 26 H 1.08994 * 109.47288 * 63.92638 * 1 2 3 27 27 H 1.09011 * 109.46621 * 240.00493 * 2 1 3 28 28 H 1.08999 * 109.47629 * 120.00415 * 2 1 3 29 29 H 1.08997 * 109.48002 * 54.47910 * 4 3 2 30 30 H 1.09006 * 109.47309 * 174.48295 * 4 3 2 31 31 H 0.96996 * 120.00196 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99543 * 110.89412 * 16 13 3 33 33 H 1.09007 * 109.47386 * 288.13654 * 18 17 16 34 34 H 1.09000 * 109.47353 * 48.13394 * 18 17 16 35 35 H 1.08996 * 109.47437 * 168.13444 * 18 17 16 36 36 H 1.08993 * 110.86882 * 345.32809 * 19 17 16 37 37 H 1.09003 * 111.04539 * 221.73542 * 19 17 16 38 38 H 1.08999 * 110.44107 * 268.10784 * 20 19 17 39 39 H 1.09000 * 110.54917 * 145.63946 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1749 2.1028 -1.2653 5 6 3.2541 1.4468 -2.0876 6 1 3.7714 0.5790 -1.7060 7 6 3.5811 1.9546 -3.3270 8 7 2.9516 3.0117 -3.7915 9 14 4.9184 1.1411 -4.3466 10 1 5.4684 -0.0216 -3.6042 11 1 4.3456 0.6795 -5.6365 12 1 6.0047 2.1190 -4.6089 13 16 2.3934 2.1268 1.4303 14 8 3.0545 3.3379 1.0902 15 8 2.9742 1.1313 2.2614 16 7 0.9646 2.5593 2.1470 17 6 0.1424 3.6203 1.5602 18 6 -0.0980 3.3489 0.0739 19 6 -1.2032 3.7349 2.3105 20 6 -0.9857 4.9958 3.1777 21 8 -0.0049 5.7815 2.4377 22 6 0.8069 4.9668 1.7489 23 8 1.9028 5.2646 1.3362 24 1 -0.3633 -1.0252 0.0704 25 1 -0.3632 0.5736 0.8528 26 1 -0.3633 0.4517 -0.9230 27 1 1.8933 -0.5138 -0.8901 28 1 1.8935 -0.5139 0.8899 29 1 1.2343 2.0797 -1.8156 30 1 2.4515 3.1374 -1.0618 31 1 3.1819 3.3692 -4.6633 32 1 0.6721 2.1100 2.9554 33 1 0.8251 3.5186 -0.4805 34 1 -0.4171 2.3152 -0.0598 35 1 -0.8732 4.0192 -0.2972 36 1 -1.3751 2.8587 2.9355 37 1 -2.0287 3.8807 1.6137 38 1 -0.5930 4.7213 4.1568 39 1 -1.9169 5.5521 3.2844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810102408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:44 Heat of formation + Delta-G solvation = -166.564083 kcal Electronic energy + Delta-G solvation = -25781.249625 eV Core-core repulsion = 22043.685136 eV Total energy + Delta-G solvation = -3737.564489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.19907 -38.60359 -38.21961 -37.95222 -36.95009 -36.81377 -34.66989 -32.14666 -31.48395 -30.26545 -28.50863 -26.53813 -24.82750 -23.56073 -23.16915 -21.82487 -20.14226 -18.94791 -18.77640 -18.42184 -18.11910 -17.76721 -17.23012 -16.98410 -16.29939 -15.87460 -15.37406 -15.27926 -14.91913 -14.64665 -14.53770 -14.02244 -13.78571 -13.72357 -13.58442 -13.49225 -13.20329 -13.14986 -12.98207 -12.87806 -12.71013 -12.64495 -12.51402 -12.35705 -12.11486 -12.02854 -11.80973 -11.49677 -11.42764 -11.31080 -10.62447 -10.39554 -9.72046 -8.18735 -6.30577 -0.38211 1.00887 1.38111 1.41345 1.52350 2.01790 2.24986 2.40589 2.62369 2.91623 3.12993 3.20656 3.47046 3.66183 3.91695 4.02399 4.11753 4.35270 4.52523 4.55048 4.60340 4.69873 4.73597 4.78236 4.98529 5.01815 5.11147 5.21450 5.27247 5.31114 5.48386 5.56654 5.72401 5.79130 5.92614 6.12126 6.18004 6.53873 6.81102 7.38361 8.89203 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.019097 B = 0.005828 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.816428 B = 4802.990414 C = 5186.755630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.990 5.990 4 C 0.271 3.729 5 C -0.550 4.550 6 H 0.058 0.942 7 C 0.010 3.990 8 N -0.924 5.924 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.285 1.285 13 S 2.775 3.225 14 O -0.987 6.987 15 O -1.013 7.013 16 N -1.092 6.092 17 C 0.130 3.870 18 C -0.196 4.196 19 C -0.136 4.136 20 C 0.041 3.959 21 O -0.366 6.366 22 C 0.441 3.559 23 O -0.449 6.449 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.266 0.734 32 H 0.433 0.567 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.057 -2.985 14.021 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.832 5.832 4 C 0.147 3.853 5 C -0.589 4.589 6 H 0.076 0.924 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.211 1.211 13 S 2.784 3.216 14 O -0.970 6.970 15 O -0.997 6.997 16 N -0.857 5.857 17 C 0.039 3.961 18 C -0.254 4.254 19 C -0.175 4.175 20 C -0.031 4.031 21 O -0.283 6.283 22 C 0.277 3.723 23 O -0.329 6.329 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.272 0.728 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.120 0.880 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.580 -2.245 13.893 20.996 hybrid contribution 0.844 -0.291 -0.747 1.164 sum -14.737 -2.536 13.146 19.911 Atomic orbital electron populations 1.22280 0.93981 1.03534 1.02586 1.21370 0.95798 0.81303 1.03212 1.57507 1.81698 1.22738 1.21293 1.18709 0.95935 0.90956 0.79693 1.21896 1.20637 1.14070 1.02321 0.92375 1.25778 0.98715 0.95502 0.98930 1.70040 1.43024 1.23689 1.19593 0.85503 0.78915 0.78475 0.78740 1.19090 1.19500 1.21141 1.01959 0.74059 0.72755 0.72862 1.93736 1.73172 1.46415 1.83712 1.93513 1.75818 1.61463 1.68926 1.55789 1.41819 1.47538 1.40579 1.21436 0.93389 0.84035 0.97240 1.22944 1.04537 1.06458 0.91471 1.23425 0.93063 1.00809 1.00167 1.24670 0.92188 0.91570 0.94721 1.87042 1.44347 1.37892 1.59034 1.24258 0.84056 0.87929 0.76089 1.90978 1.17156 1.78570 1.46213 0.89434 0.90787 0.92709 0.90948 0.90240 0.95391 0.95928 0.92552 0.72848 0.93142 0.87145 0.88057 0.84069 0.85099 0.88013 0.83308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 8.80 71.98 0.63 -3.09 16 2 C 0.11 3.51 6.29 86.38 0.54 4.06 16 3 N -0.99 -40.21 1.93 -519.82 -1.00 -41.22 16 4 C 0.27 13.75 3.34 85.63 0.29 14.04 16 5 C -0.55 -31.10 8.64 25.60 0.22 -30.88 16 6 H 0.06 3.25 7.65 -2.91 -0.02 3.23 16 7 C 0.01 0.59 5.46 84.66 0.46 1.05 16 8 N -0.92 -55.37 13.29 21.45 0.28 -55.09 16 9 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 S 2.77 111.43 5.62 -56.49 -0.32 111.12 16 14 O -0.99 -51.02 12.60 -118.50 -1.49 -52.52 16 15 O -1.01 -42.71 17.04 -128.00 -2.18 -44.89 16 16 N -1.09 -28.17 5.47 -152.38 -0.83 -29.01 16 17 C 0.13 3.21 1.07 3.56 0.00 3.21 16 18 C -0.20 -5.53 6.70 71.98 0.48 -5.05 16 19 C -0.14 -1.34 6.48 31.64 0.20 -1.14 16 20 C 0.04 0.46 7.90 72.52 0.57 1.04 16 21 O -0.37 -9.69 11.05 -50.14 -0.55 -10.25 16 22 C 0.44 15.22 7.34 71.44 0.52 15.75 16 23 O -0.45 -21.60 14.57 29.56 0.43 -21.17 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.31 7.18 -2.39 -0.02 1.29 16 26 H 0.05 1.36 7.60 -2.39 -0.02 1.35 16 27 H 0.07 2.59 7.40 -2.38 -0.02 2.57 16 28 H 0.08 2.38 7.17 -2.39 -0.02 2.37 16 29 H 0.03 1.42 7.53 -2.39 -0.02 1.40 16 30 H 0.02 1.34 5.66 -2.38 -0.01 1.33 16 31 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.43 7.15 8.37 -96.75 -0.81 6.34 16 33 H 0.05 2.01 4.16 -2.38 -0.01 2.00 16 34 H 0.11 2.66 4.64 -2.39 -0.01 2.65 16 35 H 0.10 2.29 7.89 -2.39 -0.02 2.27 16 36 H 0.14 0.39 7.68 -2.39 -0.02 0.37 16 37 H 0.13 0.72 7.66 -2.39 -0.02 0.70 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -88.11 317.78 0.57 -87.54 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.28 Total: 9.43 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 3.93 Total: -1.01 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -1.55 Total: -125.31 kcal Atomic # 8 Polarization: -125.03 SS G_CDS: -3.80 Total: -128.83 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 111.43 SS G_CDS: -0.32 Total: 111.12 kcal Total: -88.11 0.57 -87.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810102408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.024 kcal (2) G-P(sol) polarization free energy of solvation -88.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds