Wall clock time and date at job start Fri Apr 10 2020 14:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47245 * 2 1 4 4 C 1.46501 * 120.00019 * 65.25876 * 3 2 1 5 5 C 1.50696 * 109.47200 * 275.00217 * 4 3 2 6 6 H 1.08002 * 120.00468 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99787 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00239 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47041 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47190 * 119.99454 * 9 7 5 12 12 H 1.48501 * 109.47174 * 239.99355 * 9 7 5 13 13 S 1.65595 * 119.99726 * 245.26581 * 3 2 1 14 14 O 1.42097 * 106.40645 * 6.80504 * 13 3 2 15 15 O 1.42101 * 106.40706 * 139.72995 * 13 3 2 16 16 N 1.65597 * 107.21522 * 253.26613 * 13 3 2 17 17 C 1.46502 * 119.99969 * 69.21072 * 16 13 3 18 18 C 1.52999 * 110.32977 * 312.18503 * 17 16 13 19 19 C 1.54495 * 110.36670 * 189.94509 * 17 16 13 20 20 C 1.54577 * 102.14784 * 256.50616 * 19 17 16 21 21 O 1.45837 * 104.43958 * 333.15562 * 20 19 17 22 22 C 1.34059 * 109.91202 * 30.60127 * 21 20 19 23 23 O 1.20822 * 125.09640 * 159.18844 * 22 21 20 24 24 H 1.09000 * 109.47172 * 300.00273 * 1 2 3 25 25 H 1.08998 * 109.47115 * 60.00539 * 1 2 3 26 26 H 1.08998 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47172 * 239.99727 * 2 1 3 28 28 H 1.08996 * 109.46756 * 119.99857 * 2 1 3 29 29 H 1.09000 * 109.47191 * 35.00478 * 4 3 2 30 30 H 1.08998 * 109.46713 * 155.00202 * 4 3 2 31 31 H 0.96999 * 120.00449 * 180.02562 * 8 7 5 32 32 H 0.97005 * 120.00296 * 249.20364 * 16 13 3 33 33 H 1.08996 * 109.46577 * 75.87888 * 18 17 16 34 34 H 1.08991 * 109.47211 * 195.88412 * 18 17 16 35 35 H 1.09001 * 109.46830 * 315.88482 * 18 17 16 36 36 H 1.08995 * 110.87093 * 14.66688 * 19 17 16 37 37 H 1.09006 * 110.86681 * 138.34765 * 19 17 16 38 38 H 1.08995 * 110.43875 * 91.88953 * 20 19 17 39 39 H 1.08994 * 110.44088 * 214.41495 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7620 2.2488 1.1523 5 6 0.4019 2.8823 1.0113 6 1 -0.2105 2.6605 0.1498 7 6 -0.0607 3.7451 1.9822 8 7 0.6848 4.0148 3.0315 9 14 -1.7469 4.5298 1.8078 10 1 -2.3807 4.0662 0.5474 11 1 -2.5961 4.1400 2.9619 12 1 -1.6042 6.0076 1.7752 13 16 2.8601 1.9617 -1.3026 14 8 2.8020 0.9518 -2.3005 15 8 2.4048 3.2910 -1.5147 16 7 4.4480 2.0785 -0.8475 17 6 5.2331 0.8646 -0.6099 18 6 4.4557 -0.1050 0.2825 19 6 6.5904 1.2202 0.0369 20 6 7.5649 1.0816 -1.1550 21 8 6.9240 0.1140 -2.0381 22 6 5.5914 0.2036 -1.9232 23 8 4.7955 -0.1855 -2.7448 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7940 1.6569 2.0670 30 1 2.5229 3.0280 1.1968 31 1 0.3592 4.6215 3.7148 32 1 4.8584 2.9507 -0.7383 33 1 3.6763 -0.5923 -0.3033 34 1 5.1361 -0.8581 0.6799 35 1 4.0009 0.4447 1.1065 36 1 6.5840 2.2419 0.4162 37 1 6.8409 0.5127 0.8274 38 1 7.6845 2.0389 -1.6622 39 1 8.5303 0.7062 -0.8157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810102428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:46 Heat of formation + Delta-G solvation = -140.463264 kcal Electronic energy + Delta-G solvation = -25535.958751 eV Core-core repulsion = 21799.526079 eV Total energy + Delta-G solvation = -3736.432673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23794 -37.40250 -36.73353 -36.23343 -35.83308 -35.09700 -32.59484 -31.13879 -29.72403 -29.40844 -26.90451 -25.46652 -22.87402 -22.75406 -21.67709 -20.75270 -18.78337 -17.66588 -17.30166 -16.80122 -16.76162 -16.38168 -16.08903 -15.31041 -14.82287 -14.53308 -14.24074 -13.98019 -13.65818 -13.29016 -13.05390 -12.89801 -12.47157 -12.44483 -12.23212 -12.10492 -11.83624 -11.62614 -11.35170 -11.32713 -11.23454 -10.99932 -10.98452 -10.94053 -10.71444 -10.62489 -10.39792 -10.33834 -9.85770 -9.60312 -9.26357 -8.45658 -8.08624 -6.08132 -4.09494 1.18478 2.09201 3.14774 3.30208 3.38363 3.41583 3.45860 3.69643 3.95109 4.18536 4.33648 4.44858 4.54617 4.85875 5.02072 5.12402 5.24922 5.28698 5.38026 5.45677 5.51944 5.58549 5.88518 5.91027 5.97050 6.11521 6.23347 6.47709 6.60240 6.70229 6.97928 7.11014 7.17787 7.39063 7.55731 7.63513 7.91551 8.20374 8.94028 9.55073 11.00537 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.024240 B = 0.005171 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.846855 B = 5413.041901 C = 5700.626980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.518 4.518 6 H 0.065 0.935 7 C 0.060 3.940 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.283 1.283 13 S 2.766 3.234 14 O -0.966 6.966 15 O -0.964 6.964 16 N -1.113 6.113 17 C 0.130 3.870 18 C -0.183 4.183 19 C -0.155 4.155 20 C 0.052 3.948 21 O -0.350 6.350 22 C 0.453 3.547 23 O -0.390 6.390 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.416 0.584 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.894 -7.308 -1.905 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.005 4.005 3 N -0.835 5.835 4 C 0.137 3.863 5 C -0.557 4.557 6 H 0.083 0.917 7 C -0.142 4.142 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 S 2.774 3.226 14 O -0.949 6.949 15 O -0.948 6.948 16 N -0.872 5.872 17 C 0.038 3.962 18 C -0.241 4.241 19 C -0.194 4.194 20 C -0.022 4.022 21 O -0.267 6.267 22 C 0.287 3.713 23 O -0.267 6.267 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.250 0.750 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.178 -7.496 -3.192 15.493 hybrid contribution -0.555 1.089 0.678 1.398 sum 12.622 -6.407 -2.515 14.377 Atomic orbital electron populations 1.22161 0.95714 1.00238 1.04111 1.21224 0.95484 0.82382 1.01419 1.57762 1.67968 1.20733 1.37079 1.18964 0.96809 0.87817 0.82672 1.21597 1.01768 1.25785 1.06572 0.91678 1.24926 0.97749 0.96307 0.95197 1.69918 1.37209 1.36424 1.10374 0.86497 0.84036 0.79259 0.78012 1.19614 1.21093 1.20957 1.02550 0.72482 0.73814 0.73715 1.93684 1.85927 1.59647 1.55653 1.93653 1.78220 1.38188 1.84690 1.56410 1.31198 1.11688 1.87918 1.21218 0.94022 0.87104 0.93872 1.22719 1.01624 0.99061 1.00673 1.23317 0.92106 1.05620 0.98340 1.24126 0.96937 0.92202 0.88967 1.87058 1.21131 1.55792 1.62672 1.23579 0.81639 0.78046 0.88038 1.90933 1.49143 1.41973 1.44627 0.89832 0.93118 0.93459 0.90069 0.92145 0.94667 0.95271 0.92878 0.75016 0.89822 0.90012 0.88374 0.87485 0.87745 0.89650 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.02 37.16 0.34 -2.57 16 2 C 0.12 2.07 4.32 -4.04 -0.02 2.05 16 3 N -0.99 -19.52 1.63 -115.67 -0.19 -19.71 16 4 C 0.26 6.02 4.95 -5.20 -0.03 5.99 16 5 C -0.52 -13.84 7.59 -34.44 -0.26 -14.10 16 6 H 0.07 1.78 7.16 -52.49 -0.38 1.40 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -25.24 13.29 55.43 0.74 -24.51 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 S 2.77 54.79 5.44 -107.50 -0.58 54.21 16 14 O -0.97 -20.63 12.70 -66.88 -0.85 -21.48 16 15 O -0.96 -23.05 17.72 -57.17 -1.01 -24.07 16 16 N -1.11 -16.29 5.60 0.49 0.00 -16.28 16 17 C 0.13 1.61 1.05 -131.88 -0.14 1.47 16 18 C -0.18 -2.18 6.63 37.16 0.25 -1.94 16 19 C -0.16 -1.17 6.47 -25.12 -0.16 -1.33 16 20 C 0.05 0.38 7.90 37.99 0.30 0.68 16 21 O -0.35 -4.34 11.05 -38.46 -0.43 -4.76 16 22 C 0.45 6.86 7.36 36.32 0.27 7.12 16 23 O -0.39 -7.61 14.88 -26.50 -0.39 -8.01 16 24 H 0.08 1.66 6.62 -51.93 -0.34 1.32 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.35 5.71 -51.93 -0.30 1.06 16 28 H 0.06 0.89 7.55 -51.93 -0.39 0.50 16 29 H 0.04 0.83 8.11 -51.93 -0.42 0.41 16 30 H 0.03 0.71 7.99 -51.93 -0.41 0.29 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.42 5.07 8.41 -34.47 -0.29 4.78 16 33 H 0.08 1.14 4.84 -51.93 -0.25 0.89 16 34 H 0.08 0.72 7.77 -51.93 -0.40 0.32 16 35 H 0.10 1.22 7.13 -51.93 -0.37 0.85 16 36 H 0.11 0.67 7.72 -51.93 -0.40 0.26 16 37 H 0.10 0.58 7.59 -51.93 -0.39 0.19 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -35.71 321.36 -7.63 -43.34 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.18 Total: 1.00 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 0.45 Total: -1.07 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.55 Total: -60.50 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -2.68 Total: -58.32 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 54.79 SS G_CDS: -0.58 Total: 54.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.71 -7.63 -43.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810102428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.128 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds