Wall clock time and date at job start Fri Apr 10 2020 14:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47245 * 2 1 4 4 C 1.46501 * 120.00019 * 65.25876 * 3 2 1 5 5 C 1.50696 * 109.47200 * 275.00217 * 4 3 2 6 6 H 1.08002 * 120.00468 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99787 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00239 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47041 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47190 * 119.99454 * 9 7 5 12 12 H 1.48501 * 109.47174 * 239.99355 * 9 7 5 13 13 S 1.65595 * 119.99726 * 245.26581 * 3 2 1 14 14 O 1.42097 * 106.40645 * 6.80504 * 13 3 2 15 15 O 1.42101 * 106.40706 * 139.72995 * 13 3 2 16 16 N 1.65597 * 107.21522 * 253.26613 * 13 3 2 17 17 C 1.46502 * 119.99969 * 69.21072 * 16 13 3 18 18 C 1.52999 * 110.32977 * 312.18503 * 17 16 13 19 19 C 1.54495 * 110.36670 * 189.94509 * 17 16 13 20 20 C 1.54577 * 102.14784 * 256.50616 * 19 17 16 21 21 O 1.45837 * 104.43958 * 333.15562 * 20 19 17 22 22 C 1.34059 * 109.91202 * 30.60127 * 21 20 19 23 23 O 1.20822 * 125.09640 * 159.18844 * 22 21 20 24 24 H 1.09000 * 109.47172 * 300.00273 * 1 2 3 25 25 H 1.08998 * 109.47115 * 60.00539 * 1 2 3 26 26 H 1.08998 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47172 * 239.99727 * 2 1 3 28 28 H 1.08996 * 109.46756 * 119.99857 * 2 1 3 29 29 H 1.09000 * 109.47191 * 35.00478 * 4 3 2 30 30 H 1.08998 * 109.46713 * 155.00202 * 4 3 2 31 31 H 0.96999 * 120.00449 * 180.02562 * 8 7 5 32 32 H 0.97005 * 120.00296 * 249.20364 * 16 13 3 33 33 H 1.08996 * 109.46577 * 75.87888 * 18 17 16 34 34 H 1.08991 * 109.47211 * 195.88412 * 18 17 16 35 35 H 1.09001 * 109.46830 * 315.88482 * 18 17 16 36 36 H 1.08995 * 110.87093 * 14.66688 * 19 17 16 37 37 H 1.09006 * 110.86681 * 138.34765 * 19 17 16 38 38 H 1.08995 * 110.43875 * 91.88953 * 20 19 17 39 39 H 1.08994 * 110.44088 * 214.41495 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7620 2.2488 1.1523 5 6 0.4019 2.8823 1.0113 6 1 -0.2105 2.6605 0.1498 7 6 -0.0607 3.7451 1.9822 8 7 0.6848 4.0148 3.0315 9 14 -1.7469 4.5298 1.8078 10 1 -2.3807 4.0662 0.5474 11 1 -2.5961 4.1400 2.9619 12 1 -1.6042 6.0076 1.7752 13 16 2.8601 1.9617 -1.3026 14 8 2.8020 0.9518 -2.3005 15 8 2.4048 3.2910 -1.5147 16 7 4.4480 2.0785 -0.8475 17 6 5.2331 0.8646 -0.6099 18 6 4.4557 -0.1050 0.2825 19 6 6.5904 1.2202 0.0369 20 6 7.5649 1.0816 -1.1550 21 8 6.9240 0.1140 -2.0381 22 6 5.5914 0.2036 -1.9232 23 8 4.7955 -0.1855 -2.7448 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7940 1.6569 2.0670 30 1 2.5229 3.0280 1.1968 31 1 0.3592 4.6215 3.7148 32 1 4.8584 2.9507 -0.7383 33 1 3.6763 -0.5923 -0.3033 34 1 5.1361 -0.8581 0.6799 35 1 4.0009 0.4447 1.1065 36 1 6.5840 2.2419 0.4162 37 1 6.8409 0.5127 0.8274 38 1 7.6845 2.0389 -1.6622 39 1 8.5303 0.7062 -0.8157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810102428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:26:46 Heat of formation + Delta-G solvation = -167.567729 kcal Electronic energy + Delta-G solvation = -25537.134089 eV Core-core repulsion = 21799.526079 eV Total energy + Delta-G solvation = -3737.608010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21211 -38.58950 -38.24181 -37.84955 -37.01517 -36.79000 -34.59663 -32.11755 -31.29446 -30.30617 -28.74985 -26.41589 -24.71153 -23.54612 -23.21322 -21.85800 -20.10479 -18.96151 -18.73376 -18.45640 -18.14212 -17.77956 -17.15736 -16.86936 -16.36518 -15.74156 -15.41771 -15.29361 -14.99201 -14.60889 -14.56444 -14.11338 -13.89942 -13.64038 -13.50097 -13.33058 -13.11562 -13.07015 -12.99021 -12.90529 -12.80898 -12.77182 -12.56759 -12.19310 -12.15773 -12.11650 -11.70428 -11.54157 -11.48366 -11.41621 -10.52870 -10.43354 -9.76691 -8.15449 -6.21636 -0.33987 0.96056 1.38273 1.42071 1.52611 2.02262 2.23788 2.43716 2.59870 2.89054 3.16216 3.18569 3.52122 3.62976 3.90154 4.01209 4.11759 4.34521 4.46414 4.53875 4.63513 4.69347 4.73431 4.78153 4.98355 4.98971 5.02852 5.15539 5.22429 5.27419 5.50779 5.63750 5.68533 5.80335 5.90049 6.07374 6.20941 6.47004 6.85484 7.44986 8.91987 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.024240 B = 0.005171 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.846855 B = 5413.041901 C = 5700.626980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.276 3.724 5 C -0.529 4.529 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.923 5.923 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.283 1.283 13 S 2.779 3.221 14 O -0.983 6.983 15 O -1.014 7.014 16 N -1.101 6.101 17 C 0.122 3.878 18 C -0.187 4.187 19 C -0.143 4.143 20 C 0.045 3.955 21 O -0.360 6.360 22 C 0.452 3.548 23 O -0.449 6.449 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.036 0.964 30 H 0.019 0.981 31 H 0.265 0.735 32 H 0.428 0.572 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.716 -7.899 -0.571 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.834 5.834 4 C 0.152 3.848 5 C -0.569 4.569 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.563 5.563 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.198 1.198 12 H -0.209 1.209 13 S 2.788 3.212 14 O -0.966 6.966 15 O -0.997 6.997 16 N -0.865 5.865 17 C 0.030 3.970 18 C -0.245 4.245 19 C -0.182 4.182 20 C -0.028 4.028 21 O -0.277 6.277 22 C 0.288 3.712 23 O -0.330 6.330 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.265 0.735 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.115 0.885 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 15.023 -8.082 -1.846 17.159 hybrid contribution -0.987 1.222 0.241 1.589 sum 14.036 -6.860 -1.605 15.705 Atomic orbital electron populations 1.22139 0.96332 1.01790 1.01849 1.21444 0.94971 0.81280 1.03106 1.57587 1.68758 1.21314 1.35706 1.18583 0.94742 0.87806 0.83631 1.21873 1.03181 1.25973 1.05880 0.93209 1.25551 1.00621 0.96947 0.95207 1.69972 1.38405 1.37091 1.10871 0.85733 0.80942 0.78358 0.78018 1.20110 1.19779 1.20856 1.01862 0.73428 0.72383 0.73565 1.93670 1.86628 1.59845 1.56495 1.93581 1.79988 1.40584 1.85574 1.55909 1.29501 1.13500 1.87542 1.21559 0.96283 0.85949 0.93164 1.22781 1.01985 0.99702 1.00030 1.23447 0.88319 1.07625 0.98772 1.24630 0.97925 0.92107 0.88165 1.87032 1.19866 1.56839 1.63974 1.24034 0.82200 0.76786 0.88137 1.90894 1.50959 1.44555 1.46573 0.92132 0.95177 0.90070 0.89513 0.89189 0.94629 0.96320 0.92626 0.73511 0.91882 0.86438 0.88661 0.85617 0.84710 0.88492 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.74 9.02 71.98 0.65 -5.09 16 2 C 0.12 3.94 4.32 86.38 0.37 4.32 16 3 N -0.99 -39.07 1.63 -519.86 -0.85 -39.91 16 4 C 0.28 12.83 4.95 85.63 0.42 13.25 16 5 C -0.53 -28.66 7.59 25.60 0.19 -28.46 16 6 H 0.05 2.79 7.16 -2.91 -0.02 2.77 16 7 C 0.02 0.86 5.46 84.66 0.46 1.33 16 8 N -0.92 -51.61 13.29 21.45 0.28 -51.32 16 9 Si 0.94 44.25 29.54 68.60 2.03 46.27 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 S 2.78 111.62 5.44 -56.49 -0.31 111.31 16 14 O -0.98 -43.00 12.70 -118.72 -1.51 -44.51 16 15 O -1.01 -49.86 17.72 -128.00 -2.27 -52.13 16 16 N -1.10 -31.16 5.60 -152.36 -0.85 -32.02 16 17 C 0.12 2.76 1.05 3.57 0.00 2.76 16 18 C -0.19 -4.04 6.63 71.98 0.48 -3.56 16 19 C -0.14 -1.55 6.47 31.64 0.20 -1.34 16 20 C 0.04 0.47 7.90 72.52 0.57 1.04 16 21 O -0.36 -8.17 11.05 -50.11 -0.55 -8.73 16 22 C 0.45 13.23 7.36 71.44 0.53 13.76 16 23 O -0.45 -17.82 14.88 29.39 0.44 -17.38 16 24 H 0.06 2.42 6.62 -2.39 -0.02 2.40 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.09 2.87 5.71 -2.39 -0.01 2.86 16 28 H 0.09 2.49 7.55 -2.39 -0.02 2.48 16 29 H 0.04 1.66 8.11 -2.39 -0.02 1.64 16 30 H 0.02 0.91 7.99 -2.39 -0.02 0.90 16 31 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.43 9.89 8.41 -96.74 -0.81 9.08 16 33 H 0.06 1.64 4.84 -2.39 -0.01 1.63 16 34 H 0.12 1.64 7.77 -2.39 -0.02 1.62 16 35 H 0.09 2.13 7.13 -2.39 -0.02 2.12 16 36 H 0.13 0.97 7.72 -2.39 -0.02 0.96 16 37 H 0.13 0.73 7.59 -2.38 -0.02 0.71 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -80.16 321.36 0.57 -79.59 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.27 Total: 10.82 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 3.89 Total: -2.00 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -1.42 Total: -123.25 kcal Atomic # 8 Polarization: -118.85 SS G_CDS: -3.89 Total: -122.74 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 111.62 SS G_CDS: -0.31 Total: 111.31 kcal Total: -80.16 0.57 -79.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810102428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.974 kcal (2) G-P(sol) polarization free energy of solvation -80.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds