Wall clock time and date at job start Fri Apr 10 2020 14:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47264 * 2 1 4 4 C 1.50700 * 109.47254 * 239.99509 * 2 1 3 5 5 O 1.21282 * 120.00143 * 265.00393 * 4 2 1 6 6 N 1.34770 * 119.99680 * 85.00146 * 4 2 1 7 7 C 1.46504 * 119.99724 * 180.02562 * 6 4 2 8 8 H 1.08998 * 110.88586 * 31.12396 * 7 6 4 9 9 C 1.55124 * 111.22706 * 267.20369 * 7 6 4 10 10 N 1.47424 * 104.72590 * 279.18026 * 9 7 6 11 11 C 1.36931 * 125.65002 * 155.81879 * 10 9 7 12 12 H 1.08000 * 119.99971 * 348.66149 * 11 10 9 13 13 C 1.38811 * 120.00321 * 168.66039 * 11 10 9 14 14 N 1.31615 * 120.00507 * 165.60719 * 13 11 10 15 15 Si 1.86809 * 119.99746 * 345.60952 * 13 11 10 16 16 H 1.48497 * 109.47011 * 185.29412 * 15 13 11 17 17 H 1.48497 * 109.47088 * 65.29149 * 15 13 11 18 18 H 1.48498 * 109.46669 * 305.29040 * 15 13 11 19 19 C 1.47025 * 108.69978 * 335.54811 * 10 9 7 20 20 C 1.54317 * 107.27277 * 1.29268 * 19 10 9 21 21 H 1.09005 * 110.71764 * 263.82766 * 20 19 10 22 22 O 1.42894 * 110.72601 * 140.55438 * 20 19 10 23 23 S 1.81396 * 109.46726 * 119.99539 * 2 1 3 24 24 C 1.81398 * 101.92393 * 304.99835 * 23 2 1 25 25 O 1.42098 * 108.58121 * 59.48819 * 23 2 1 26 26 O 1.42109 * 108.57685 * 190.51011 * 23 2 1 27 27 H 1.08996 * 109.47078 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46944 * 300.00550 * 1 2 3 29 29 H 1.08999 * 109.46904 * 59.99951 * 1 2 3 30 30 H 0.97000 * 120.00226 * 359.97438 * 6 4 2 31 31 H 1.09001 * 110.49996 * 160.33151 * 9 7 6 32 32 H 1.09003 * 110.34052 * 37.94147 * 9 7 6 33 33 H 0.97002 * 119.99922 * 354.92806 * 14 13 11 34 34 H 1.08997 * 109.87719 * 120.70491 * 19 10 9 35 35 H 1.08991 * 109.88322 * 241.87021 * 19 10 9 36 36 H 0.96699 * 113.99979 * 61.44881 * 22 20 19 37 37 H 1.08996 * 109.47066 * 60.00365 * 24 23 2 38 38 H 1.09004 * 109.47278 * 179.97438 * 24 23 2 39 39 H 1.08995 * 109.47502 * 299.99910 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3208 -1.8873 -1.1759 6 7 2.1611 -0.0382 -2.3913 7 6 2.6490 -0.7291 -3.5876 8 1 2.3553 -1.7787 -3.5771 9 6 4.1869 -0.5858 -3.7310 10 7 4.3851 0.7480 -4.3269 11 6 5.5189 1.5086 -4.2218 12 1 6.2924 1.2310 -3.5211 13 6 5.6741 2.6365 -5.0159 14 7 6.6076 3.5192 -4.7302 15 14 4.5579 2.9016 -6.4903 16 1 5.0066 4.1014 -7.2414 17 1 3.1622 3.1023 -6.0247 18 1 4.6179 1.7116 -7.3767 19 6 3.1661 1.1234 -5.0582 20 6 2.1515 -0.0253 -4.8779 21 1 2.1866 -0.7077 -5.7273 22 8 0.8313 0.4900 -4.6958 23 16 2.1346 -0.8550 1.4812 24 6 1.2997 0.0579 2.8079 25 8 1.6407 -2.1874 1.4682 26 8 3.5342 -0.6349 1.5914 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9301 0.9029 -2.4350 31 1 4.5825 -1.3585 -4.3902 32 1 4.6652 -0.6391 -2.7530 33 1 7.1382 3.4203 -3.9242 34 1 2.7573 2.0467 -4.6479 35 1 3.3939 1.2542 -6.1160 36 1 0.5034 1.0054 -5.4454 37 1 0.2202 -0.0207 2.6794 38 1 1.5820 -0.3638 3.7726 39 1 1.5949 1.1064 2.7690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219886491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:04 Heat of formation + Delta-G solvation = -145.526280 kcal Electronic energy + Delta-G solvation = -24553.353720 eV Core-core repulsion = 20816.701498 eV Total energy + Delta-G solvation = -3736.652221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40668 -39.74922 -38.08648 -37.06008 -36.81736 -35.55987 -34.69156 -33.76619 -30.68088 -30.14357 -29.48307 -26.32896 -25.48025 -22.78143 -22.62337 -21.40798 -19.92527 -19.65989 -18.84740 -18.46284 -18.01108 -17.49681 -17.14516 -16.82423 -16.67063 -16.17032 -15.77819 -15.54482 -15.22948 -14.86881 -14.49304 -14.19946 -14.11552 -14.00179 -13.93671 -13.55167 -13.24355 -13.21609 -13.16185 -13.08681 -12.98541 -12.87506 -12.35732 -12.16944 -12.00532 -11.60572 -11.54676 -11.31175 -11.14307 -11.06515 -10.59682 -10.28487 -9.14274 -8.69214 -5.53219 -1.09669 1.30341 1.36225 1.51391 1.72518 1.73429 1.86114 2.55364 2.79257 2.90614 3.01326 3.08676 3.27889 3.37276 3.56746 3.61461 3.68161 3.96013 4.09047 4.11024 4.23863 4.34928 4.37298 4.55386 4.59838 4.66292 4.71450 4.75673 4.92520 4.94291 5.16707 5.31784 5.47612 6.03333 6.28101 6.76364 6.79850 6.96073 7.34445 8.00748 8.82991 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.020550 B = 0.004479 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.197129 B = 6250.430788 C = 6820.705348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.606 4.606 3 H 0.185 0.815 4 C 0.528 3.472 5 O -0.577 6.577 6 N -0.678 5.678 7 C 0.140 3.860 8 H 0.112 0.888 9 C 0.117 3.883 10 N -0.622 5.622 11 C -0.316 4.316 12 H 0.036 0.964 13 C -0.078 4.078 14 N -0.962 5.962 15 Si 1.115 2.885 16 H -0.316 1.316 17 H -0.237 1.237 18 H -0.282 1.282 19 C 0.070 3.930 20 C 0.109 3.891 21 H 0.109 0.891 22 O -0.554 6.554 23 S 2.420 3.580 24 C -0.622 4.622 25 O -0.964 6.964 26 O -0.993 6.993 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.093 0.907 30 H 0.416 0.584 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.245 0.755 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.402 0.598 37 H 0.170 0.830 38 H 0.148 0.852 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.695 -3.167 9.303 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.715 4.715 3 H 0.203 0.797 4 C 0.314 3.686 5 O -0.458 6.458 6 N -0.328 5.328 7 C 0.034 3.966 8 H 0.130 0.870 9 C -0.010 4.010 10 N -0.351 5.351 11 C -0.444 4.444 12 H 0.054 0.946 13 C -0.270 4.270 14 N -0.606 5.606 15 Si 0.941 3.059 16 H -0.245 1.245 17 H -0.162 1.162 18 H -0.210 1.210 19 C -0.055 4.055 20 C 0.049 3.951 21 H 0.127 0.873 22 O -0.362 6.362 23 S 2.605 3.395 24 C -0.776 4.776 25 O -0.961 6.961 26 O -0.991 6.991 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.112 0.888 30 H 0.253 0.747 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.253 0.747 37 H 0.188 0.812 38 H 0.166 0.834 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -21.062 -3.999 8.654 23.119 hybrid contribution 1.140 0.281 0.686 1.359 sum -19.922 -3.718 9.340 22.315 Atomic orbital electron populations 1.21826 0.84615 1.05180 1.07967 1.30641 1.11233 1.16058 1.13568 0.79727 1.19952 0.77087 0.86504 0.85103 1.90836 1.52372 1.17102 1.85456 1.45406 1.64340 1.14657 1.08351 1.22234 0.92489 0.97861 0.84038 0.87012 1.22207 0.94423 0.87678 0.96645 1.44639 1.12247 1.16471 1.61783 1.20002 0.96930 1.07224 1.20230 0.94629 1.27359 1.01888 0.92601 1.05196 1.70999 1.25308 1.36460 1.27792 0.83381 0.75503 0.74251 0.72765 1.24511 1.16185 1.20970 1.22976 0.87974 0.98798 0.95727 1.22911 0.82127 0.93615 0.96483 0.87307 1.86416 1.28282 1.73699 1.47831 1.07809 0.75612 0.76937 0.79183 1.30099 1.16161 1.16008 1.15368 1.93526 1.81862 1.34622 1.86112 1.93547 1.32069 1.87183 1.86265 0.91047 0.85221 0.88792 0.74742 0.93279 0.95485 0.94582 0.92781 0.94462 0.74656 0.81235 0.83410 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.88 71.98 0.64 -0.89 16 2 C -0.61 -11.83 3.15 29.85 0.09 -11.74 16 3 H 0.19 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.53 16.63 6.95 87.66 0.61 17.24 16 5 O -0.58 -23.20 15.12 11.24 0.17 -23.03 16 6 N -0.68 -20.62 4.82 -435.60 -2.10 -22.71 16 7 C 0.14 4.56 3.31 46.46 0.15 4.71 16 8 H 0.11 3.53 7.54 -2.39 -0.02 3.51 16 9 C 0.12 4.82 6.95 86.93 0.60 5.43 16 10 N -0.62 -29.12 3.32 -691.58 -2.30 -31.42 16 11 C -0.32 -18.32 10.56 84.03 0.89 -17.43 16 12 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 13 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 14 N -0.96 -61.60 13.70 21.65 0.30 -61.30 16 15 Si 1.11 50.22 24.53 68.60 1.68 51.91 16 16 H -0.32 -14.98 7.11 99.48 0.71 -14.27 16 17 H -0.24 -8.71 5.43 99.48 0.54 -8.17 16 18 H -0.28 -11.90 6.84 99.48 0.68 -11.22 16 19 C 0.07 2.54 4.37 86.73 0.38 2.92 16 20 C 0.11 2.95 4.12 31.78 0.13 3.08 16 21 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 22 O -0.55 -11.64 12.67 -148.98 -1.89 -13.53 16 23 S 2.42 55.52 4.52 -56.49 -0.26 55.27 16 24 C -0.62 -4.11 10.01 113.37 1.14 -2.97 16 25 O -0.96 -30.39 17.21 -121.20 -2.09 -32.48 16 26 O -0.99 -33.90 18.10 -127.37 -2.31 -36.21 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.13 0.11 6.39 -2.38 -0.02 0.10 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.42 11.21 8.39 -92.71 -0.78 10.43 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.25 16.00 8.73 -92.71 -0.81 15.19 16 34 H 0.05 2.00 6.70 -2.39 -0.02 1.98 16 35 H 0.04 1.39 3.82 -2.39 -0.01 1.38 16 36 H 0.40 4.89 9.11 -74.06 -0.67 4.21 16 37 H 0.17 -0.04 6.77 -2.39 -0.02 -0.06 16 38 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.16 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -96.80 327.81 -4.27 -101.07 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -0.59 Total: 16.19 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.10 Total: -3.76 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -4.10 Total: -115.43 kcal Atomic # 8 Polarization: -99.14 SS G_CDS: -6.11 Total: -105.24 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.68 Total: 51.91 kcal Atomic # 16 Polarization: 55.52 SS G_CDS: -0.26 Total: 55.27 kcal Total: -96.80 -4.27 -101.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219886491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.455 kcal (2) G-P(sol) polarization free energy of solvation -96.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds