Wall clock time and date at job start Fri Apr 10 2020 14:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46938 * 2 1 4 4 C 1.50700 * 109.47078 * 119.99560 * 2 1 3 5 5 O 1.21281 * 119.99863 * 99.99848 * 4 2 1 6 6 N 1.34775 * 120.00209 * 280.00232 * 4 2 1 7 7 C 1.46499 * 120.00135 * 179.97438 * 6 4 2 8 8 H 1.08997 * 110.88256 * 31.12362 * 7 6 4 9 9 C 1.54910 * 111.00855 * 267.19972 * 7 6 4 10 10 N 1.47421 * 104.83166 * 204.91396 * 9 7 6 11 11 C 1.36935 * 125.64627 * 204.07831 * 10 9 7 12 12 H 1.07997 * 120.00446 * 0.03035 * 11 10 9 13 13 C 1.38815 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.31613 * 120.00360 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99933 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47282 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47062 * 119.99973 * 15 13 11 18 18 H 1.48501 * 109.47289 * 240.00022 * 15 13 11 19 19 C 1.47027 * 108.70472 * 24.12905 * 10 9 7 20 20 C 1.54328 * 107.26870 * 358.94121 * 19 10 9 21 21 H 1.09001 * 110.71468 * 219.44531 * 20 19 10 22 22 O 1.42897 * 110.72258 * 96.17210 * 20 19 10 23 23 S 1.81393 * 109.47399 * 239.99912 * 2 1 3 24 24 C 1.81404 * 101.92151 * 59.99813 * 23 2 1 25 25 O 1.42099 * 108.57770 * 305.51509 * 23 2 1 26 26 O 1.42093 * 108.58136 * 174.48636 * 23 2 1 27 27 H 1.08997 * 109.47169 * 60.00300 * 1 2 3 28 28 H 1.09005 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47443 * 300.00254 * 1 2 3 30 30 H 0.97001 * 120.00148 * 0.02562 * 6 4 2 31 31 H 1.08998 * 110.36390 * 323.75291 * 9 7 6 32 32 H 1.08995 * 110.36532 * 86.07648 * 9 7 6 33 33 H 0.96996 * 120.00495 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.87808 * 239.52171 * 19 10 9 35 35 H 1.09003 * 109.88323 * 118.35673 * 19 10 9 36 36 H 0.96701 * 113.99546 * 66.47222 * 22 20 19 37 37 H 1.09002 * 109.47124 * 60.00027 * 24 23 2 38 38 H 1.09001 * 109.46975 * 300.00148 * 24 23 2 39 39 H 1.09004 * 109.47147 * 180.02562 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4064 -1.8616 1.1559 6 7 2.0658 -0.0663 2.4140 7 6 2.5536 -0.7570 3.6103 8 1 3.3144 -1.4932 3.3508 9 6 1.3857 -1.4144 4.3870 10 7 1.8656 -1.5133 5.7774 11 6 1.4175 -2.4055 6.7147 12 1 0.6471 -3.1174 6.4578 13 6 1.9537 -2.3949 7.9951 14 7 2.8923 -1.5271 8.3084 15 14 1.3431 -3.6124 9.2735 16 1 0.2921 -4.4737 8.6745 17 1 2.4746 -4.4577 9.7322 18 1 0.7766 -2.8732 10.4302 19 6 2.9040 -0.4947 5.9915 20 6 3.0926 0.2549 4.6557 21 1 4.1468 0.4678 4.4786 22 8 2.3224 1.4585 4.6383 23 16 2.1347 -0.8551 -1.4810 24 6 1.4229 0.1515 -2.8118 25 8 1.5480 -2.1484 -1.5284 26 8 3.5496 -0.7330 -1.5284 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7663 0.8544 2.4738 31 1 0.4959 -0.7869 4.3366 32 1 1.1748 -2.4061 3.9870 33 1 3.2668 -1.5195 9.2031 34 1 3.8386 -0.9738 6.2829 35 1 2.5851 0.2027 6.7661 36 1 2.6186 2.1242 5.2740 37 1 1.7894 1.1747 -2.7291 38 1 0.3361 0.1470 -2.7291 39 1 1.7153 -0.2627 -3.7768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219886492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:25:08 Heat of formation + Delta-G solvation = -116.924093 kcal Electronic energy + Delta-G solvation = -24084.832456 eV Core-core repulsion = 20349.420519 eV Total energy + Delta-G solvation = -3735.411937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.113 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.00533 -38.07031 -37.14672 -36.11940 -34.90744 -34.29003 -33.62005 -31.60737 -29.80840 -28.52139 -27.17694 -25.24658 -24.30446 -21.20668 -20.49905 -20.06369 -18.93005 -17.89091 -17.34281 -17.13248 -16.61687 -16.23685 -15.84065 -15.22796 -15.07727 -14.78471 -14.23810 -14.02940 -13.69407 -13.60659 -13.41282 -13.22926 -12.87010 -12.75387 -12.53105 -12.35923 -12.19974 -12.16266 -12.08087 -11.34809 -11.25278 -11.00404 -10.88499 -10.81665 -10.57634 -10.54297 -10.16008 -9.95440 -9.85265 -9.37204 -8.85224 -8.68557 -6.90827 -5.77385 -3.10607 -0.33943 2.41424 2.51217 2.91932 3.38797 3.44863 3.47234 3.63824 3.73745 4.23767 4.24472 4.42354 4.48449 4.53205 4.67965 4.72484 5.01248 5.20478 5.22868 5.28956 5.32184 5.50752 5.65519 5.67737 5.81256 6.00216 6.14475 6.45325 6.60699 6.82401 7.28494 7.40674 7.52723 7.71689 7.98389 8.15123 8.18849 9.15255 9.75253 10.39069 11.34970 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.003389 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.236588 B = 8260.320172 C = 8650.759142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.614 4.614 3 H 0.154 0.846 4 C 0.538 3.462 5 O -0.528 6.528 6 N -0.692 5.692 7 C 0.134 3.866 8 H 0.110 0.890 9 C 0.131 3.869 10 N -0.600 5.600 11 C -0.225 4.225 12 H 0.081 0.919 13 C -0.009 4.009 14 N -0.926 5.926 15 Si 0.915 3.085 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.291 1.291 19 C 0.154 3.846 20 C 0.068 3.932 21 H 0.063 0.937 22 O -0.569 6.569 23 S 2.450 3.550 24 C -0.663 4.663 25 O -0.911 6.911 26 O -0.929 6.929 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.410 0.590 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.252 0.748 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.380 0.620 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 10.952 -19.375 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.723 4.723 3 H 0.172 0.828 4 C 0.320 3.680 5 O -0.405 6.405 6 N -0.342 5.342 7 C 0.028 3.972 8 H 0.128 0.872 9 C 0.004 3.996 10 N -0.327 5.327 11 C -0.353 4.353 12 H 0.099 0.901 13 C -0.205 4.205 14 N -0.574 5.574 15 Si 0.746 3.254 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.218 1.218 19 C 0.028 3.972 20 C 0.008 3.992 21 H 0.081 0.919 22 O -0.375 6.375 23 S 2.627 3.373 24 C -0.812 4.812 25 O -0.908 6.908 26 O -0.926 6.926 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.246 0.754 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.228 0.772 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.837 9.008 -19.685 21.833 hybrid contribution -0.592 1.100 1.357 1.845 sum -3.430 10.109 -18.328 21.210 Atomic orbital electron populations 1.21628 0.87630 1.05379 1.05001 1.30695 1.09011 1.15361 1.17233 0.82812 1.19123 0.78565 0.86410 0.83870 1.90883 1.47984 1.16279 1.85360 1.45614 1.64438 1.17020 1.07151 1.22517 0.98422 0.94033 0.82188 0.87248 1.21830 0.93918 0.97974 0.85898 1.44282 1.43560 1.38415 1.06459 1.19148 1.16739 1.09427 0.89992 0.90143 1.24797 0.98836 0.99372 0.97484 1.69913 1.29970 1.37780 1.19755 0.85985 0.77908 0.80200 0.81333 1.20418 1.21668 1.21766 1.21879 0.93731 0.91087 0.90455 1.23527 0.93116 0.84866 0.97702 0.91905 1.86221 1.60233 1.27339 1.63740 1.07429 0.75945 0.76685 0.77262 1.30419 1.14341 1.16692 1.19780 1.93599 1.79084 1.33259 1.84897 1.93592 1.26828 1.86737 1.85456 0.90274 0.89549 0.89519 0.75437 0.95591 0.93541 0.93742 0.92512 0.92795 0.77162 0.85255 0.85031 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.93 37.16 0.33 -0.64 16 2 C -0.61 -5.66 3.10 -27.88 -0.09 -5.75 16 3 H 0.15 0.76 8.14 -51.92 -0.42 0.34 16 4 C 0.54 8.09 7.00 -10.99 -0.08 8.01 16 5 O -0.53 -10.36 15.29 -3.35 -0.05 -10.41 16 6 N -0.69 -10.21 5.17 -51.73 -0.27 -10.48 16 7 C 0.13 2.47 3.31 -65.78 -0.22 2.25 16 8 H 0.11 2.18 7.54 -51.93 -0.39 1.78 16 9 C 0.13 2.85 6.92 -2.53 -0.02 2.83 16 10 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 11 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 12 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 13 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 14 N -0.93 -26.68 10.31 55.49 0.57 -26.10 16 15 Si 0.92 22.18 29.55 -169.99 -5.02 17.16 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 C 0.15 3.57 5.14 -3.06 -0.02 3.55 16 20 C 0.07 1.19 4.20 -24.89 -0.10 1.09 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 O -0.57 -8.60 12.14 -35.23 -0.43 -9.02 16 23 S 2.45 25.49 4.32 -107.50 -0.46 25.03 16 24 C -0.66 -2.92 10.17 101.05 1.03 -1.89 16 25 O -0.91 -13.36 17.40 -62.66 -1.09 -14.45 16 26 O -0.93 -13.29 18.10 -57.83 -1.05 -14.34 16 27 H 0.08 0.23 6.56 -51.93 -0.34 -0.11 16 28 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.41 5.02 7.59 -40.82 -0.31 4.71 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.06 1.45 7.38 -51.93 -0.38 1.07 16 35 H 0.05 1.36 7.43 -51.93 -0.39 0.97 16 36 H 0.38 4.41 9.12 45.56 0.42 4.83 16 37 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 38 H 0.13 0.30 6.87 -51.92 -0.36 -0.06 16 39 H 0.13 0.50 8.14 -51.92 -0.42 0.07 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -39.19 335.20 -7.41 -46.60 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.68 Total: 4.29 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 0.59 Total: 2.63 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.27 Total: -52.54 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -2.62 Total: -48.23 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 25.49 SS G_CDS: -0.46 Total: 25.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -39.19 -7.41 -46.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219886492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.320 kcal (2) G-P(sol) polarization free energy of solvation -39.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds